Wall clock time and date at job start Tue Mar 31 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47658 * 2 1 4 4 H 1.09005 * 109.46848 * 304.94489 * 3 2 1 5 5 C 1.53004 * 109.47376 * 184.94823 * 3 2 1 6 6 C 1.52999 * 109.47165 * 64.99883 * 5 3 2 7 7 C 1.53000 * 109.47205 * 64.99977 * 6 5 3 8 8 C 1.53005 * 109.47097 * 185.00193 * 6 5 3 9 9 C 1.50694 * 109.47265 * 64.94412 * 3 2 1 10 10 O 1.21287 * 119.99823 * 23.73285 * 9 3 2 11 11 N 1.34777 * 120.00372 * 203.72863 * 9 3 2 12 12 C 1.46961 * 120.59795 * 184.81605 * 11 9 3 13 13 C 1.53374 * 108.63595 * 235.25317 * 12 11 9 14 14 N 1.46967 * 108.62959 * 310.56906 * 13 12 11 15 15 C 1.36933 * 120.59268 * 235.20307 * 14 13 12 16 16 H 1.08010 * 119.99619 * 149.24082 * 15 14 13 17 17 C 1.38813 * 120.00544 * 329.51254 * 15 14 13 18 18 N 1.31615 * 120.00013 * 161.59796 * 17 15 14 19 19 Si 1.86799 * 119.99480 * 341.59989 * 17 15 14 20 20 H 1.48503 * 109.46767 * 93.50724 * 19 17 15 21 21 H 1.48498 * 109.47041 * 213.50306 * 19 17 15 22 22 H 1.48503 * 109.47515 * 333.50711 * 19 17 15 23 23 C 1.46965 * 118.80960 * 55.48616 * 14 13 12 24 24 C 1.46963 * 120.59245 * 4.84065 * 11 9 3 25 25 H 1.09004 * 109.46483 * 303.71833 * 1 2 3 26 26 H 1.08999 * 109.46819 * 63.71132 * 1 2 3 27 27 H 1.08998 * 109.47317 * 183.71862 * 1 2 3 28 28 H 1.09004 * 109.47077 * 239.99524 * 2 1 3 29 29 H 1.09004 * 109.46963 * 120.00365 * 2 1 3 30 30 H 1.08999 * 109.47215 * 185.00286 * 5 3 2 31 31 H 1.09002 * 109.46996 * 305.00071 * 5 3 2 32 32 H 1.09002 * 109.46896 * 305.00067 * 6 5 3 33 33 H 1.09003 * 109.47073 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.46976 * 300.00212 * 7 6 5 35 35 H 1.09002 * 109.47120 * 60.00227 * 7 6 5 36 36 H 1.09004 * 109.46979 * 59.99986 * 8 6 5 37 37 H 1.08991 * 109.46727 * 179.97438 * 8 6 5 38 38 H 1.08996 * 109.46907 * 300.00410 * 8 6 5 39 39 H 1.08994 * 109.61213 * 115.50114 * 12 11 9 40 40 H 1.09008 * 109.60993 * 354.99205 * 12 11 9 41 41 H 1.09006 * 109.60792 * 190.83071 * 13 12 11 42 42 H 1.08998 * 109.61367 * 70.31570 * 13 12 11 43 43 H 0.97003 * 119.99869 * 180.02562 * 18 17 15 44 44 H 1.08995 * 109.61546 * 64.25947 * 23 14 13 45 45 H 1.09008 * 109.60921 * 184.77522 * 23 14 13 46 46 H 1.09006 * 109.61008 * 244.49364 * 24 11 9 47 47 H 1.09005 * 109.61181 * 4.99949 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6063 1.9812 -0.8424 5 6 3.5651 1.4441 -0.1244 6 6 3.9664 0.8729 -1.4859 7 6 3.4687 1.8015 -2.5953 8 6 5.4902 0.7584 -1.5619 9 6 1.6404 2.1166 1.2870 10 8 1.4103 1.4508 2.2744 11 7 1.5386 3.4594 1.3411 12 6 1.2531 4.1374 2.6133 13 6 0.0093 5.0164 2.4320 14 7 0.1814 5.8289 1.2195 15 6 0.0770 7.1932 1.2743 16 1 0.6505 7.8063 0.5947 17 6 -0.7615 7.7884 2.2067 18 7 -0.6060 9.0583 2.5157 19 14 -2.1105 6.7868 3.0231 20 1 -1.6084 6.2335 4.3065 21 1 -3.2842 7.6580 3.2851 22 1 -2.5113 5.6727 2.1268 23 6 0.4613 5.1506 -0.0538 24 6 1.7105 4.2719 0.1286 25 1 -0.3632 0.5705 0.8549 26 1 -0.3633 0.4552 -0.9214 27 1 -0.3634 -1.0255 0.0666 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9358 2.4652 -0.0353 31 1 3.9950 0.8311 0.6678 32 1 3.5212 -0.1141 -1.6112 33 1 3.7550 1.3947 -3.5653 34 1 2.3832 1.8830 -2.5412 35 1 3.9139 2.7885 -2.4700 36 1 5.8447 0.0968 -0.7714 37 1 5.7760 0.3510 -2.5316 38 1 5.9354 1.7454 -1.4364 39 1 2.1026 4.7592 2.8952 40 1 1.0663 3.3952 3.3895 41 1 -0.1061 5.6697 3.2969 42 1 -0.8729 4.3849 2.3270 43 1 -1.1917 9.4741 3.1676 44 1 -0.3894 4.5284 -0.3317 45 1 0.6445 5.8926 -0.8311 46 1 2.5928 4.9035 0.2336 47 1 1.8261 3.6186 -0.7363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308086069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:49 Heat of formation + Delta-G solvation = -29.386496 kcal Electronic energy + Delta-G solvation = -24070.084998 eV Core-core repulsion = 20866.976589 eV Total energy + Delta-G solvation = -3203.108409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.23623 -37.59567 -36.74779 -33.99537 -33.67602 -31.50499 -30.87413 -29.41029 -27.38367 -27.15255 -24.61389 -23.65246 -23.35778 -22.12103 -20.69269 -19.67228 -18.44293 -17.47366 -16.42188 -15.71313 -15.59536 -15.12129 -14.79270 -14.30794 -14.25253 -13.99762 -13.84912 -13.73479 -13.39613 -13.11779 -12.70207 -12.61044 -12.40106 -12.29890 -12.19543 -11.95715 -11.85409 -11.50052 -11.32515 -11.09028 -11.04621 -10.94800 -10.79441 -10.51696 -10.46161 -10.41860 -10.26281 -10.05012 -9.60767 -9.28582 -8.83896 -8.29548 -6.96805 -6.01920 -3.42785 2.90106 3.27798 3.31946 3.45631 3.48464 4.46431 4.47375 4.60600 4.69408 4.83007 4.89061 4.91882 5.13679 5.15995 5.27097 5.32471 5.43823 5.49520 5.54843 5.55171 5.60954 5.62447 5.69718 5.72083 5.74166 5.83776 5.86481 5.89274 5.97349 6.00361 6.05098 6.11200 6.15862 6.21517 6.24662 6.27771 6.34069 6.40651 6.49203 6.67606 6.92437 7.78854 7.89461 8.26390 8.49105 8.84498 9.63393 10.01207 11.13713 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.004799 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.946513 B = 5832.624856 C = 6370.450916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.111 4.111 4 H 0.095 0.905 5 C -0.103 4.103 6 C -0.097 4.097 7 C -0.152 4.152 8 C -0.147 4.147 9 C 0.516 3.484 10 O -0.553 6.553 11 N -0.599 5.599 12 C 0.095 3.905 13 C 0.115 3.885 14 N -0.605 5.605 15 C -0.266 4.266 16 H 0.086 0.914 17 C 0.028 3.972 18 N -0.907 5.907 19 Si 0.883 3.117 20 H -0.287 1.287 21 H -0.301 1.301 22 H -0.270 1.270 23 C 0.133 3.867 24 C 0.087 3.913 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.030 0.970 43 H 0.264 0.736 44 H 0.027 0.973 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.383 -16.689 -9.166 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.132 4.132 4 H 0.113 0.887 5 C -0.141 4.141 6 C -0.115 4.115 7 C -0.209 4.209 8 C -0.205 4.205 9 C 0.304 3.696 10 O -0.432 6.432 11 N -0.331 5.331 12 C -0.029 4.029 13 C -0.011 4.011 14 N -0.329 5.329 15 C -0.394 4.394 16 H 0.104 0.896 17 C -0.171 4.171 18 N -0.549 5.549 19 Si 0.713 3.287 20 H -0.214 1.214 21 H -0.229 1.229 22 H -0.195 1.195 23 C 0.007 3.993 24 C -0.038 4.038 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.045 0.955 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.195 -16.840 -8.555 20.589 hybrid contribution -0.854 -0.245 0.540 1.040 sum 7.341 -17.085 -8.015 20.249 Atomic orbital electron populations 1.21799 0.95735 1.01681 1.01956 1.21427 0.96137 0.94369 1.02396 1.21497 0.97491 0.97685 0.96495 0.88664 1.21567 0.92959 1.02048 0.97518 1.21168 0.96012 0.99737 0.94579 1.21935 1.01366 0.99706 0.97942 1.21835 0.95300 1.01861 1.01467 1.20580 0.76907 0.81850 0.90258 1.90633 1.51122 1.63723 1.37696 1.48038 1.69420 1.05463 1.10220 1.22208 0.99599 0.95805 0.85275 1.21717 0.94443 0.93520 0.91459 1.44271 1.83925 1.03323 1.01361 1.18899 1.21031 0.79525 1.19918 0.89640 1.25343 0.97946 0.95212 0.98634 1.69806 1.39272 1.11691 1.34116 0.86937 0.82920 0.79657 0.79193 1.21419 1.22926 1.19541 1.21413 0.93536 0.94698 0.89691 1.22534 1.00693 0.94320 0.86245 0.92136 0.93113 0.92818 0.91356 0.90949 0.91313 0.91361 0.90770 0.92770 0.92330 0.92377 0.92781 0.92751 0.92602 0.91326 0.89830 0.90087 0.95192 0.92628 0.95503 0.90553 0.91222 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.75 37.16 0.36 -1.49 16 2 C -0.11 -1.19 4.95 -26.73 -0.13 -1.32 16 3 C -0.11 -1.32 1.27 -91.78 -0.12 -1.44 16 4 H 0.10 1.05 4.33 -51.93 -0.22 0.82 16 5 C -0.10 -1.06 4.13 -26.73 -0.11 -1.17 16 6 C -0.10 -0.79 2.79 -90.62 -0.25 -1.04 16 7 C -0.15 -1.18 8.95 37.16 0.33 -0.85 16 8 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 9 C 0.52 8.37 6.02 -10.99 -0.07 8.30 16 10 O -0.55 -10.68 14.64 5.55 0.08 -10.60 16 11 N -0.60 -10.18 2.95 -172.21 -0.51 -10.69 16 12 C 0.10 1.81 6.60 -3.60 -0.02 1.79 16 13 C 0.11 2.53 4.35 -3.59 -0.02 2.52 16 14 N -0.60 -13.97 2.70 -171.76 -0.46 -14.44 16 15 C -0.27 -7.20 10.02 -15.06 -0.15 -7.35 16 16 H 0.09 2.46 8.06 -52.48 -0.42 2.03 16 17 C 0.03 0.80 5.25 -17.43 -0.09 0.71 16 18 N -0.91 -27.33 13.97 55.49 0.78 -26.55 16 19 Si 0.88 22.31 24.38 -169.99 -4.14 18.17 16 20 H -0.29 -7.03 6.69 56.52 0.38 -6.65 16 21 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 22 H -0.27 -6.80 6.57 56.52 0.37 -6.43 16 23 C 0.13 2.46 6.70 -3.37 -0.02 2.44 16 24 C 0.09 1.31 6.36 -3.37 -0.02 1.29 16 25 H 0.06 0.90 6.74 -51.93 -0.35 0.55 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.62 6.25 -51.93 -0.32 0.29 16 29 H 0.07 0.92 7.69 -51.93 -0.40 0.52 16 30 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.59 6.25 -51.93 -0.32 0.26 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.46 6.46 -51.93 -0.34 0.13 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.08 1.58 6.99 -51.92 -0.36 1.22 16 41 H 0.08 1.92 4.63 -51.93 -0.24 1.68 16 42 H 0.03 0.68 7.08 -51.93 -0.37 0.31 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.08 1.34 7.93 -51.92 -0.41 0.93 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.08 0.93 5.39 -51.93 -0.28 0.65 16 LS Contribution 349.04 15.07 5.26 5.26 Total: -1.00 -31.32 349.04 -7.27 -38.58 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -8.30 Total: -1.35 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 0.03 Total: 1.61 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.20 Total: -51.67 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.32 -7.27 -38.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308086069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.198 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds