Wall clock time and date at job start Tue Mar 31 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47319 * 2 1 4 4 H 1.08998 * 109.47270 * 176.84962 * 3 2 1 5 5 C 1.53006 * 109.47148 * 296.84761 * 3 2 1 6 6 C 1.52994 * 109.47054 * 294.09404 * 5 3 2 7 7 C 1.53003 * 109.47269 * 173.58618 * 6 5 3 8 8 C 1.53002 * 109.47362 * 293.58950 * 6 5 3 9 9 C 1.50700 * 109.46984 * 56.84560 * 3 2 1 10 10 O 1.21277 * 120.00056 * 246.38320 * 9 3 2 11 11 N 1.34778 * 119.99885 * 66.38270 * 9 3 2 12 12 C 1.46960 * 120.59315 * 3.19933 * 11 9 3 13 13 C 1.53809 * 108.40094 * 124.75739 * 12 11 9 14 14 N 1.46965 * 108.58202 * 49.63254 * 13 12 11 15 15 C 1.36932 * 120.59394 * 124.66832 * 14 13 12 16 16 H 1.08000 * 120.00420 * 212.01026 * 15 14 13 17 17 C 1.38814 * 120.00117 * 32.01499 * 15 14 13 18 18 N 1.31618 * 119.99860 * 11.54860 * 17 15 14 19 19 Si 1.86795 * 120.00302 * 191.55300 * 17 15 14 20 20 H 1.48497 * 109.47192 * 59.99590 * 19 17 15 21 21 H 1.48501 * 109.47398 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47225 * 299.99790 * 19 17 15 23 23 C 1.46961 * 118.81282 * 304.64871 * 14 13 12 24 24 C 1.46965 * 120.59394 * 183.47136 * 11 9 3 25 25 H 1.08998 * 109.47015 * 185.11514 * 1 2 3 26 26 H 1.09005 * 109.46740 * 305.11466 * 1 2 3 27 27 H 1.08995 * 109.47278 * 65.11372 * 1 2 3 28 28 H 1.09004 * 109.46674 * 240.00019 * 2 1 3 29 29 H 1.08998 * 109.47053 * 120.00261 * 2 1 3 30 30 H 1.08998 * 109.47231 * 54.10016 * 5 3 2 31 31 H 1.08996 * 109.46903 * 174.09463 * 5 3 2 32 32 H 1.09004 * 109.47049 * 53.58805 * 6 5 3 33 33 H 1.09004 * 109.46933 * 60.00115 * 7 6 5 34 34 H 1.08996 * 109.46967 * 180.02562 * 7 6 5 35 35 H 1.08997 * 109.46690 * 300.00299 * 7 6 5 36 36 H 1.08998 * 109.47083 * 180.02562 * 8 6 5 37 37 H 1.09004 * 109.46919 * 299.99934 * 8 6 5 38 38 H 1.08996 * 109.47199 * 59.99651 * 8 6 5 39 39 H 1.09005 * 109.60689 * 244.54105 * 12 11 9 40 40 H 1.08999 * 109.61025 * 5.04848 * 12 11 9 41 41 H 1.09000 * 109.74123 * 289.84406 * 13 12 11 42 42 H 1.09000 * 109.53600 * 169.30314 * 13 12 11 43 43 H 0.97000 * 120.00421 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.61443 * 295.48313 * 23 14 13 45 45 H 1.09002 * 109.75248 * 175.05024 * 23 14 13 46 46 H 1.08999 * 109.60907 * 354.94943 * 24 11 9 47 47 H 1.09000 * 109.60838 * 115.45958 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1286 1.4430 0.0565 5 6 1.5959 2.1405 -1.2871 6 6 2.2868 1.4876 -2.4858 7 6 1.7244 2.0761 -3.7814 8 6 3.7916 1.7551 -2.4152 9 6 1.4749 2.1751 1.1895 10 8 0.6925 3.0869 1.0245 11 7 1.8390 1.8169 2.4368 12 6 2.8388 0.7611 2.6500 13 6 3.9679 1.3312 3.5250 14 7 3.3679 1.9854 4.6963 15 6 3.7378 1.6215 5.9635 16 1 3.0217 1.6712 6.7704 17 6 5.0334 1.1889 6.2111 18 7 5.9645 1.3405 5.2933 19 14 5.4553 0.3916 7.8468 20 1 4.6284 -0.8280 8.0309 21 1 6.8935 0.0221 7.8611 22 1 5.1795 1.3476 8.9493 23 6 2.3641 3.0374 4.4831 24 6 1.2390 2.4711 3.6080 25 1 -0.3633 -1.0236 0.0916 26 1 -0.3633 0.5912 0.8407 27 1 -0.3633 0.4324 -0.9322 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.5153 2.0485 -1.3960 31 1 1.8678 3.1950 -1.2409 32 1 2.1077 0.4126 -2.4673 33 1 1.9036 3.1511 -3.7999 34 1 2.2164 1.6106 -4.6354 35 1 0.6525 1.8854 -3.8317 36 1 4.2838 1.2904 -3.2695 37 1 3.9708 2.8302 -2.4337 38 1 4.1922 1.3359 -1.4923 39 1 2.3740 -0.0863 3.1541 40 1 3.2438 0.4415 1.6898 41 1 4.5440 2.0596 2.9543 42 1 4.6197 0.5212 3.8523 43 1 6.8699 1.0386 5.4664 44 1 2.8259 3.8873 3.9806 45 1 1.9561 3.3570 5.4421 46 1 0.5873 3.2812 3.2807 47 1 0.6630 1.7428 4.1788 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308086070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:52 Heat of formation + Delta-G solvation = -33.806884 kcal Electronic energy + Delta-G solvation = -23966.103125 eV Core-core repulsion = 20762.803033 eV Total energy + Delta-G solvation = -3203.300092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.13154 -37.43174 -36.42765 -34.12788 -33.49067 -31.25227 -30.15879 -28.90438 -27.21736 -26.97806 -25.02235 -23.79109 -22.69012 -22.18919 -20.41955 -19.19283 -18.31020 -17.00442 -16.16437 -15.72312 -15.64987 -14.93126 -14.74057 -14.04808 -14.01152 -13.91813 -13.64695 -13.34022 -13.22183 -13.09111 -12.75702 -12.42672 -12.23419 -12.19765 -11.86455 -11.56872 -11.49700 -11.29032 -11.19270 -10.85226 -10.79225 -10.73308 -10.69603 -10.51506 -10.41439 -10.26757 -10.19579 -10.03498 -9.84201 -9.15565 -8.59141 -8.18538 -6.65610 -5.86196 -3.36032 3.08527 3.33706 3.39268 3.39804 3.51881 4.42585 4.65042 4.72204 4.84592 5.02053 5.06925 5.17399 5.25874 5.31236 5.36768 5.48119 5.55575 5.59166 5.65378 5.76837 5.78122 5.81249 5.86296 5.92113 5.93623 6.00363 6.05363 6.05683 6.07788 6.14406 6.21914 6.23328 6.28460 6.36731 6.42476 6.47275 6.50909 6.81385 6.96754 7.24096 7.47698 7.70823 7.99810 8.38153 8.65789 9.12488 9.73089 10.32389 11.21166 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.004262 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.268630 B = 6568.536374 C = 6956.256663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.109 4.109 4 H 0.096 0.904 5 C -0.094 4.094 6 C -0.099 4.099 7 C -0.146 4.146 8 C -0.151 4.151 9 C 0.517 3.483 10 O -0.561 6.561 11 N -0.596 5.596 12 C 0.078 3.922 13 C 0.159 3.841 14 N -0.591 5.591 15 C -0.257 4.257 16 H 0.065 0.935 17 C 0.007 3.993 18 N -0.904 5.904 19 Si 0.906 3.094 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.132 3.868 24 C 0.095 3.905 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.023 0.977 42 H 0.099 0.901 43 H 0.256 0.744 44 H 0.022 0.978 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 -3.175 -13.978 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.130 4.130 4 H 0.114 0.886 5 C -0.132 4.132 6 C -0.118 4.118 7 C -0.203 4.203 8 C -0.208 4.208 9 C 0.305 3.695 10 O -0.441 6.441 11 N -0.328 5.328 12 C -0.046 4.046 13 C 0.032 3.968 14 N -0.314 5.314 15 C -0.387 4.387 16 H 0.083 0.917 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.736 3.264 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.005 3.995 24 C -0.029 4.029 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.041 0.959 42 H 0.117 0.883 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.985 -2.736 -14.009 15.892 hybrid contribution 0.455 -0.438 0.953 1.143 sum -6.530 -3.174 -13.057 14.940 Atomic orbital electron populations 1.21816 0.95580 1.01338 1.02227 1.21658 0.96620 0.94528 1.02965 1.21395 1.01826 0.96049 0.93759 0.88620 1.21465 1.00730 0.99534 0.91436 1.21198 0.95459 1.00352 0.94765 1.21819 1.00628 1.01013 0.96827 1.21916 0.95415 1.01814 1.01681 1.20520 0.81310 0.83413 0.84210 1.90615 1.36774 1.31009 1.85712 1.48040 1.41345 1.38124 1.05277 1.22868 0.91366 0.89892 1.00507 1.21262 0.91309 0.97579 0.86621 1.43916 1.46132 1.38753 1.02553 1.19152 0.93514 1.39960 0.86042 0.91723 1.25184 0.95297 1.01083 0.97673 1.69947 1.01581 1.49155 1.34155 0.86317 0.77107 0.79476 0.83506 1.20899 1.21550 1.20804 1.21294 0.90009 0.91149 0.97035 1.22172 0.96827 0.97405 0.86509 0.92842 0.92640 0.92437 0.90881 0.90856 0.91099 0.91451 0.90968 0.92732 0.92943 0.92841 0.92963 0.92681 0.92265 0.91985 0.90749 0.95900 0.88324 0.93407 0.95962 0.91673 0.90140 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.31 37.16 0.35 -1.45 16 2 C -0.12 -1.39 5.19 -26.73 -0.14 -1.53 16 3 C -0.11 -1.47 1.55 -91.77 -0.14 -1.61 16 4 H 0.10 1.27 5.46 -51.93 -0.28 0.99 16 5 C -0.09 -1.17 3.30 -26.73 -0.09 -1.26 16 6 C -0.10 -0.99 2.81 -90.62 -0.25 -1.24 16 7 C -0.15 -1.30 9.19 37.16 0.34 -0.96 16 8 C -0.15 -1.49 8.98 37.16 0.33 -1.16 16 9 C 0.52 9.02 5.50 -10.98 -0.06 8.96 16 10 O -0.56 -11.32 15.38 5.56 0.09 -11.23 16 11 N -0.60 -10.86 2.94 -172.22 -0.51 -11.36 16 12 C 0.08 1.39 5.26 -3.37 -0.02 1.37 16 13 C 0.16 3.60 5.47 -3.37 -0.02 3.58 16 14 N -0.59 -14.46 2.95 -171.77 -0.51 -14.97 16 15 C -0.26 -6.84 9.57 -15.06 -0.14 -6.99 16 16 H 0.07 1.69 7.86 -52.49 -0.41 1.28 16 17 C 0.01 0.18 5.02 -17.43 -0.09 0.09 16 18 N -0.90 -25.30 11.12 55.49 0.62 -24.68 16 19 Si 0.91 21.03 29.57 -169.99 -5.03 16.01 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.13 2.82 6.67 -3.60 -0.02 2.80 16 24 C 0.10 1.79 6.60 -3.59 -0.02 1.77 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.79 6.94 -51.93 -0.36 0.43 16 27 H 0.06 0.64 6.64 -51.93 -0.35 0.30 16 28 H 0.07 0.71 6.33 -51.93 -0.33 0.38 16 29 H 0.07 0.88 5.79 -51.93 -0.30 0.58 16 30 H 0.07 0.92 6.35 -51.93 -0.33 0.59 16 31 H 0.07 0.94 8.02 -51.93 -0.42 0.53 16 32 H 0.07 0.67 6.27 -51.93 -0.33 0.35 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.61 6.49 -51.93 -0.34 0.27 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.12 4.78 -51.93 -0.25 0.87 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.10 2.45 6.09 -51.93 -0.32 2.14 16 43 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 1.33 7.94 -51.93 -0.41 0.92 16 46 H 0.08 1.50 6.99 -51.93 -0.36 1.13 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -29.66 349.39 -8.19 -37.85 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -8.14 Total: 0.76 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 0.02 Total: 2.37 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.40 Total: -51.01 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.66 -8.19 -37.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308086070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.041 kcal (2) G-P(sol) polarization free energy of solvation -29.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds