Wall clock time and date at job start Tue Mar 31 2020 05:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47161 * 2 1 4 4 C 1.50702 * 109.46905 * 120.00051 * 2 1 3 5 5 O 1.21278 * 120.00111 * 0.02562 * 4 2 1 6 6 N 1.34783 * 119.99563 * 179.97438 * 4 2 1 7 7 C 1.46509 * 119.99656 * 180.02562 * 6 4 2 8 8 C 1.52995 * 109.46998 * 180.02562 * 7 6 4 9 9 H 1.08999 * 109.53556 * 305.10071 * 8 7 6 10 10 C 1.53124 * 109.50242 * 65.19281 * 8 7 6 11 11 C 1.53119 * 109.15841 * 177.59394 * 10 8 7 12 12 C 1.53040 * 109.28089 * 302.34776 * 11 10 8 13 13 N 1.46846 * 109.51964 * 59.17912 * 12 11 10 14 14 C 1.46902 * 110.99617 * 174.15808 * 13 12 11 15 15 C 1.52994 * 109.47466 * 294.20987 * 14 13 12 16 16 C 1.50707 * 109.46957 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00278 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99600 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99949 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99780 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46847 * 60.00443 * 20 18 16 22 22 H 1.48502 * 109.47072 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47241 * 300.00382 * 20 18 16 24 24 C 1.46846 * 111.19997 * 298.25655 * 13 12 11 25 25 H 1.09008 * 109.47477 * 299.99921 * 1 2 3 26 26 H 1.09001 * 109.47114 * 59.99525 * 1 2 3 27 27 H 1.08996 * 109.47601 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47112 * 239.99739 * 2 1 3 29 29 H 1.08996 * 109.47239 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47049 * 300.00039 * 3 2 1 31 31 H 1.09005 * 109.47117 * 60.00157 * 3 2 1 32 32 H 0.96999 * 120.00101 * 0.02562 * 6 4 2 33 33 H 1.08995 * 109.46847 * 59.99676 * 7 6 4 34 34 H 1.08997 * 109.46792 * 299.99745 * 7 6 4 35 35 H 1.08998 * 109.52523 * 297.50026 * 10 8 7 36 36 H 1.09003 * 109.52311 * 57.63282 * 10 8 7 37 37 H 1.09004 * 109.50189 * 62.29271 * 11 10 8 38 38 H 1.08998 * 109.50338 * 182.40479 * 11 10 8 39 39 H 1.08996 * 109.46572 * 299.16374 * 12 11 10 40 40 H 1.09004 * 109.46207 * 179.19455 * 12 11 10 41 41 H 1.08997 * 109.47248 * 54.21397 * 14 13 12 42 42 H 1.09002 * 109.47302 * 174.20897 * 14 13 12 43 43 H 1.09002 * 109.47207 * 299.99940 * 15 14 13 44 44 H 1.09002 * 109.46874 * 60.00238 * 15 14 13 45 45 H 0.97004 * 119.99656 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.45990 * 181.76055 * 24 13 12 47 47 H 1.08997 * 109.46419 * 301.72736 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 1.2441 -1.1717 2.0285 6 7 3.3574 -0.8340 1.4435 7 6 3.8457 -1.5252 2.6394 8 6 5.3757 -1.5251 2.6395 9 1 5.7402 -1.9571 1.7076 10 6 5.8867 -0.0876 2.7708 11 6 7.4167 -0.1018 2.8305 12 6 7.8685 -0.9709 4.0064 13 7 7.3549 -2.3357 3.8335 14 6 7.8830 -3.2321 4.8706 15 6 9.3953 -3.3814 4.6940 16 6 9.9369 -4.3015 5.7577 17 1 9.2692 -4.7360 6.4869 18 6 11.2850 -4.5878 5.8004 19 7 12.0982 -4.0575 4.9132 20 14 11.9563 -5.7277 7.1191 21 1 11.3105 -7.0594 6.9979 22 1 13.4243 -5.8727 6.9476 23 1 11.6679 -5.1579 8.4598 24 6 5.8866 -2.3529 3.8208 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.9877 -0.4654 0.8050 33 1 3.4820 -2.5526 2.6392 34 1 3.4827 -1.0114 3.5296 35 1 5.5612 0.4949 1.9090 36 1 5.4898 0.3582 3.6829 37 1 7.8134 -0.5115 1.9016 38 1 7.7850 0.9150 2.9669 39 1 7.4830 -0.5529 4.9362 40 1 8.9577 -0.9946 4.0430 41 1 7.6716 -2.8137 5.8546 42 1 7.4086 -4.2095 4.7820 43 1 9.6067 -3.8000 3.7100 44 1 9.8697 -2.4040 4.7827 45 1 13.0467 -4.2586 4.9435 46 1 5.5363 -3.3804 3.7228 47 1 5.5103 -1.9284 4.7515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330426514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:35 Heat of formation + Delta-G solvation = -69.213787 kcal Electronic energy + Delta-G solvation = -22372.137249 eV Core-core repulsion = 19167.301799 eV Total energy + Delta-G solvation = -3204.835450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.20277 -38.87238 -35.67350 -34.76977 -33.71759 -32.41171 -31.19707 -29.25388 -27.50606 -26.21184 -25.13045 -23.47016 -22.70686 -21.92750 -20.32714 -19.78723 -19.44337 -17.40201 -16.54264 -16.14139 -15.80454 -15.18383 -14.84979 -14.60399 -14.46212 -14.27016 -13.91181 -13.81045 -13.41707 -13.16744 -12.81775 -12.68030 -12.52971 -12.27979 -12.23382 -12.08827 -11.76006 -11.52143 -11.41461 -11.16103 -10.99347 -10.92789 -10.71336 -10.58838 -10.35718 -10.21034 -9.92840 -9.79825 -9.32414 -9.22097 -9.12854 -8.32755 -7.72855 -5.99790 -4.02098 2.46222 2.98264 3.33443 3.37753 3.40230 4.29939 4.35998 4.49014 4.52436 4.59926 4.73864 4.80678 4.92148 5.03164 5.23186 5.28808 5.33837 5.36099 5.41369 5.47791 5.52177 5.52903 5.58627 5.64533 5.76078 5.77123 5.88508 5.89972 5.92272 6.01997 6.06588 6.17984 6.26893 6.28428 6.41140 6.52813 6.55296 6.96640 7.29870 7.50054 7.58225 7.79682 7.89630 8.04107 8.08050 8.43375 9.04881 9.61417 11.11493 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042612 B = 0.002593 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.938473 B =10794.843823 C =11209.960641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C -0.144 4.144 4 C 0.513 3.487 5 O -0.542 6.542 6 N -0.726 5.726 7 C 0.124 3.876 8 C -0.096 4.096 9 H 0.086 0.914 10 C -0.113 4.113 11 C -0.116 4.116 12 C 0.053 3.947 13 N -0.537 5.537 14 C 0.064 3.936 15 C 0.029 3.971 16 C -0.523 4.523 17 H 0.053 0.947 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.064 3.936 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.400 0.600 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.087 0.913 41 H 0.019 0.981 42 H 0.061 0.939 43 H 0.024 0.976 44 H 0.017 0.983 45 H 0.261 0.739 46 H 0.073 0.927 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.298 11.770 -11.140 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 C -0.202 4.202 4 C 0.300 3.700 5 O -0.419 6.419 6 N -0.378 5.378 7 C 0.000 4.000 8 C -0.115 4.115 9 H 0.104 0.896 10 C -0.150 4.150 11 C -0.154 4.154 12 C -0.075 4.075 13 N -0.262 5.262 14 C -0.063 4.063 15 C -0.009 4.009 16 C -0.562 4.562 17 H 0.071 0.929 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.065 4.065 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.235 0.765 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.105 0.895 41 H 0.037 0.963 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -18.507 11.256 -11.042 24.314 hybrid contribution 0.572 -0.208 1.239 1.380 sum -17.935 11.048 -9.804 23.235 Atomic orbital electron populations 1.21608 0.92512 1.02856 1.02050 1.21318 0.98426 0.97311 0.96701 1.21794 1.01243 0.94195 1.02972 1.20711 0.82159 0.79530 0.87646 1.90702 1.55371 1.48628 1.47202 1.46061 1.07072 1.58909 1.25794 1.21394 0.93763 0.97415 0.87435 1.21428 0.92474 0.96686 1.00896 0.89613 1.21633 0.96523 0.95554 1.01312 1.21593 0.94723 0.99165 0.99909 1.22120 1.01514 0.88226 0.95652 1.61983 1.05567 1.08604 1.49999 1.22325 0.99764 0.94214 0.89999 1.19092 0.87388 0.96913 0.97464 1.21162 0.92859 1.28358 1.13774 0.92866 1.24993 0.97115 0.96217 0.95988 1.69963 1.03918 1.44157 1.35214 0.86655 0.77777 0.81371 0.82165 1.20226 1.21285 1.20306 1.21943 0.89524 0.99523 0.95547 0.91958 0.92082 0.91954 0.88520 0.92092 0.91360 0.92030 0.76501 0.91310 0.91569 0.92438 0.92278 0.91091 0.91894 0.95733 0.89466 0.96256 0.92074 0.95736 0.96492 0.92954 0.90867 0.95333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 8.48 37.15 0.32 -0.68 16 2 C -0.12 -0.83 3.26 -91.77 -0.30 -1.13 16 3 C -0.14 -0.79 9.09 37.16 0.34 -0.45 16 4 C 0.51 5.44 7.15 -10.98 -0.08 5.36 16 5 O -0.54 -8.04 15.98 5.56 0.09 -7.95 16 6 N -0.73 -6.63 5.20 -60.29 -0.31 -6.94 16 7 C 0.12 1.33 5.07 -4.04 -0.02 1.31 16 8 C -0.10 -1.07 2.39 -90.54 -0.22 -1.29 16 9 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 10 C -0.11 -1.19 5.13 -26.61 -0.14 -1.32 16 11 C -0.12 -1.46 6.09 -26.65 -0.16 -1.62 16 12 C 0.05 0.86 5.29 -3.83 -0.02 0.84 16 13 N -0.54 -9.48 4.66 -234.68 -1.09 -10.57 16 14 C 0.06 1.34 4.90 -3.83 -0.02 1.32 16 15 C 0.03 0.74 4.90 -27.88 -0.14 0.61 16 16 C -0.52 -14.80 9.11 -34.43 -0.31 -15.12 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 20 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.06 0.91 4.74 -3.84 -0.02 0.89 16 25 H 0.06 0.53 8.10 -51.92 -0.42 0.11 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.28 7.56 -51.93 -0.39 -0.11 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.40 2.71 7.10 -40.82 -0.29 2.42 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.49 7.27 -51.93 -0.38 0.11 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 1.63 6.21 -51.93 -0.32 1.31 16 41 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 42 H 0.06 1.27 7.99 -51.93 -0.41 0.86 16 43 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.02 0.46 6.43 -51.93 -0.33 0.12 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.07 1.04 8.02 -51.93 -0.42 0.62 16 47 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -32.15 367.84 -9.77 -41.93 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -8.85 Total: -2.89 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -0.86 Total: -9.70 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.67 Total: -43.58 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.15 -9.77 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330426514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.288 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds