Wall clock time and date at job start Tue Mar 31 2020 05:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47160 * 2 1 4 4 C 1.50700 * 109.47202 * 119.99653 * 2 1 3 5 5 O 1.21282 * 119.99979 * 0.02562 * 4 2 1 6 6 N 1.34771 * 120.00226 * 180.02562 * 4 2 1 7 7 C 1.46499 * 120.00264 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47240 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.50360 * 54.91782 * 8 7 6 10 10 C 1.53120 * 109.50532 * 294.79849 * 8 7 6 11 11 C 1.53119 * 109.16044 * 182.40281 * 10 8 7 12 12 C 1.53040 * 109.27555 * 57.66098 * 11 10 8 13 13 N 1.46852 * 109.52221 * 300.81307 * 12 11 10 14 14 C 1.46893 * 110.99775 * 185.84042 * 13 12 11 15 15 C 1.53004 * 109.47285 * 45.79812 * 14 13 12 16 16 C 1.50701 * 109.47211 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 15 14 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 15 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 15 21 21 H 1.48504 * 109.47209 * 89.99886 * 20 18 16 22 22 H 1.48501 * 109.47358 * 209.99377 * 20 18 16 23 23 H 1.48496 * 109.47341 * 329.99989 * 20 18 16 24 24 C 1.46848 * 111.19468 * 61.74855 * 13 12 11 25 25 H 1.09005 * 109.47016 * 299.99843 * 1 2 3 26 26 H 1.08997 * 109.47265 * 60.00142 * 1 2 3 27 27 H 1.08994 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47273 * 239.99590 * 2 1 3 29 29 H 1.08996 * 109.47362 * 59.99645 * 3 2 1 30 30 H 1.09001 * 109.47363 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46916 * 300.00072 * 3 2 1 32 32 H 0.97000 * 120.00212 * 359.97438 * 6 4 2 33 33 H 1.09003 * 109.47412 * 59.99727 * 7 6 4 34 34 H 1.09005 * 109.47165 * 299.99712 * 7 6 4 35 35 H 1.08995 * 109.52028 * 302.31143 * 10 8 7 36 36 H 1.08998 * 109.52025 * 62.43704 * 10 8 7 37 37 H 1.09006 * 109.50162 * 177.59386 * 11 10 8 38 38 H 1.08993 * 109.50453 * 297.71355 * 11 10 8 39 39 H 1.09002 * 109.45973 * 180.80503 * 12 11 10 40 40 H 1.08993 * 109.46489 * 60.83550 * 12 11 10 41 41 H 1.09000 * 109.47823 * 285.79173 * 14 13 12 42 42 H 1.09007 * 109.47029 * 165.78941 * 14 13 12 43 43 H 1.09000 * 109.47211 * 59.98987 * 15 14 13 44 44 H 1.09007 * 109.46376 * 299.99529 * 15 14 13 45 45 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.46421 * 58.27264 * 24 13 12 47 47 H 1.08999 * 109.46149 * 178.25589 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.2442 -1.1716 2.0286 6 7 3.3574 -0.8330 1.4441 7 6 3.8457 -1.5240 2.6400 8 6 5.3757 -1.5239 2.6400 9 1 5.7396 -0.5004 2.5494 10 6 5.8871 -2.3554 1.4604 11 6 7.4170 -2.3998 1.5026 12 6 7.8687 -2.9846 2.8428 13 7 7.3550 -2.1534 3.9390 14 6 7.8829 -2.6043 5.2335 15 6 9.3881 -2.8505 5.1126 16 6 9.9298 -3.3125 6.4409 17 1 9.2668 -3.4194 7.2867 18 6 11.2728 -3.5927 6.5777 19 7 12.0802 -3.4622 5.5478 20 14 11.9456 -4.1579 8.2262 21 1 11.8826 -5.6395 8.3049 22 1 13.3563 -3.7147 8.3634 23 1 11.1330 -3.5691 9.3207 24 6 5.8866 -2.1340 3.9474 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.9877 -0.4644 0.8056 33 1 3.4828 -2.5519 2.6394 34 1 3.4820 -1.0108 3.5302 35 1 5.4911 -3.3685 1.5301 36 1 5.5606 -1.9003 0.5253 37 1 7.7855 -3.0258 0.6898 38 1 7.8135 -1.3904 1.3937 39 1 8.9579 -3.0043 2.8818 40 1 7.4834 -3.9990 2.9448 41 1 7.3858 -3.5291 5.5265 42 1 7.6994 -1.8386 5.9873 43 1 9.8852 -1.9257 4.8196 44 1 9.5716 -3.6162 4.3588 45 1 13.0251 -3.6590 5.6443 46 1 5.5105 -3.1524 4.0443 47 1 5.5361 -1.5358 4.7884 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330426515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:39 Heat of formation + Delta-G solvation = -66.872475 kcal Electronic energy + Delta-G solvation = -22385.125797 eV Core-core repulsion = 19180.391874 eV Total energy + Delta-G solvation = -3204.733923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20136 -38.88828 -35.71807 -34.76685 -33.72207 -32.41086 -31.18922 -29.21816 -27.49399 -26.20932 -25.14759 -23.50473 -22.65910 -22.06132 -20.33285 -19.69427 -19.35375 -17.38345 -16.59047 -16.15108 -15.79380 -15.28169 -14.70524 -14.56640 -14.42278 -14.31391 -13.94331 -13.76921 -13.58291 -13.03875 -12.75826 -12.66311 -12.59104 -12.32234 -12.22447 -12.09931 -11.75060 -11.51305 -11.41675 -11.11013 -11.00098 -10.95485 -10.66967 -10.57700 -10.33126 -10.15006 -9.92661 -9.88227 -9.31394 -9.22012 -9.08611 -8.35712 -7.71352 -6.02115 -4.04291 2.46246 2.98381 3.30962 3.37314 3.40853 4.31506 4.36313 4.48170 4.52541 4.60164 4.74943 4.82322 4.93504 5.03797 5.23770 5.31345 5.34192 5.34968 5.42737 5.48158 5.52179 5.55326 5.60709 5.66405 5.76403 5.78846 5.91305 5.92309 5.94825 6.04693 6.08880 6.19081 6.28744 6.33385 6.41462 6.55547 6.60765 6.91607 7.29980 7.49336 7.60311 7.77312 7.83953 8.02733 8.04343 8.41219 9.02293 9.59559 11.09256 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043880 B = 0.002579 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.946943 B =10852.629708 C =11169.619118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 C -0.145 4.145 4 C 0.513 3.487 5 O -0.542 6.542 6 N -0.726 5.726 7 C 0.124 3.876 8 C -0.095 4.095 9 H 0.085 0.915 10 C -0.113 4.113 11 C -0.116 4.116 12 C 0.049 3.951 13 N -0.538 5.538 14 C 0.063 3.937 15 C 0.021 3.979 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.064 3.936 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.400 0.600 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.025 0.975 41 H 0.019 0.981 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.030 0.970 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.151 7.308 -14.360 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 C -0.202 4.202 4 C 0.299 3.701 5 O -0.419 6.419 6 N -0.378 5.378 7 C 0.000 4.000 8 C -0.114 4.114 9 H 0.103 0.897 10 C -0.151 4.151 11 C -0.154 4.154 12 C -0.079 4.079 13 N -0.263 5.263 14 C -0.064 4.064 15 C -0.016 4.016 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.065 4.065 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.235 0.765 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.044 0.956 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.364 7.426 -13.882 24.189 hybrid contribution 0.564 -1.050 0.761 1.414 sum -17.800 6.376 -13.121 23.014 Atomic orbital electron populations 1.21608 0.92515 1.02830 1.02075 1.21317 0.98423 0.97337 0.96658 1.21797 1.01279 0.94160 1.03002 1.20711 0.82161 0.79523 0.87665 1.90704 1.55375 1.48631 1.47197 1.46056 1.07070 1.58843 1.25851 1.21398 0.93782 0.97372 0.87475 1.21425 0.92455 1.01266 0.96281 0.89690 1.21638 0.96635 0.99779 0.97031 1.21608 0.94620 1.01925 0.97269 1.22210 1.02054 0.93650 0.89985 1.62018 1.05611 1.53560 1.05071 1.22317 0.98999 0.97051 0.88035 1.19244 0.87942 0.97322 0.97084 1.21187 0.93378 1.44992 0.96470 0.92748 1.24991 0.97088 0.95639 0.96617 1.69959 1.04366 1.49115 1.29879 0.86586 0.78224 0.78884 0.84256 1.20712 1.21192 1.19867 1.21943 0.89544 0.98857 0.96198 0.91924 0.92083 0.91988 0.88577 0.91980 0.92057 0.91366 0.76506 0.91543 0.91340 0.92252 0.92476 0.91875 0.91229 0.88749 0.95627 0.96220 0.91908 0.95690 0.96157 0.92982 0.95215 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 8.48 37.16 0.32 -0.68 16 2 C -0.12 -0.83 3.26 -91.77 -0.30 -1.13 16 3 C -0.14 -0.81 9.09 37.16 0.34 -0.47 16 4 C 0.51 5.44 7.15 -10.99 -0.08 5.37 16 5 O -0.54 -8.06 15.98 5.56 0.09 -7.97 16 6 N -0.73 -6.64 5.20 -60.29 -0.31 -6.95 16 7 C 0.12 1.33 5.07 -4.04 -0.02 1.31 16 8 C -0.10 -1.07 2.39 -90.53 -0.22 -1.29 16 9 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 10 C -0.11 -1.23 5.13 -26.61 -0.14 -1.36 16 11 C -0.12 -1.50 6.09 -26.65 -0.16 -1.67 16 12 C 0.05 0.82 4.85 -3.83 -0.02 0.81 16 13 N -0.54 -9.53 4.81 -234.66 -1.13 -10.66 16 14 C 0.06 1.32 5.21 -3.83 -0.02 1.30 16 15 C 0.02 0.54 4.22 -27.88 -0.12 0.43 16 16 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.06 0.91 4.71 -3.83 -0.02 0.90 16 25 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.29 7.56 -51.93 -0.39 -0.10 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.40 2.71 7.10 -40.82 -0.29 2.42 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.50 7.26 -51.93 -0.38 0.12 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.84 5.81 -51.93 -0.30 1.54 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.41 8.08 -51.93 -0.42 0.00 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.02 0.54 6.21 -51.93 -0.32 0.22 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -31.91 366.73 -9.78 -41.69 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -8.83 Total: -2.40 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -0.85 Total: -9.95 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.70 Total: -43.51 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.91 -9.78 -41.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330426515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.180 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds