Wall clock time and date at job start Tue Mar 31 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47179 * 2 1 4 4 N 1.46900 * 109.46730 * 119.99822 * 2 1 3 5 5 C 1.46849 * 111.00020 * 298.95738 * 4 2 1 6 6 C 1.53037 * 109.52114 * 174.16264 * 5 4 2 7 7 C 1.53112 * 109.28155 * 59.17974 * 6 5 4 8 8 C 1.53118 * 109.15766 * 302.34094 * 7 6 5 9 9 H 1.08999 * 109.50543 * 297.67847 * 8 7 6 10 10 C 1.53006 * 109.50498 * 177.59825 * 8 7 6 11 11 N 1.46496 * 109.46995 * 65.07890 * 10 8 7 12 12 C 1.34775 * 119.99642 * 180.02562 * 11 10 8 13 13 O 1.21279 * 120.00300 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99773 * 180.02562 * 12 11 10 15 15 C 1.53006 * 109.47126 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47184 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99819 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00046 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00192 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99979 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47261 * 60.00310 * 20 18 16 23 23 H 1.48500 * 109.47454 * 300.00304 * 20 18 16 24 24 C 1.46846 * 110.99799 * 174.70285 * 4 2 1 25 25 H 1.09002 * 109.46807 * 60.00452 * 1 2 3 26 26 H 1.09000 * 109.47105 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47403 * 300.00112 * 1 2 3 28 28 H 1.09003 * 109.47260 * 239.99460 * 2 1 3 29 29 H 1.08998 * 109.47027 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46958 * 299.99748 * 3 2 1 31 31 H 1.08997 * 109.47044 * 59.99669 * 3 2 1 32 32 H 1.08997 * 109.46656 * 54.14640 * 5 4 2 33 33 H 1.09000 * 109.44819 * 294.16715 * 5 4 2 34 34 H 1.08994 * 109.50336 * 299.23029 * 6 5 4 35 35 H 1.09002 * 109.50057 * 179.11922 * 6 5 4 36 36 H 1.09007 * 109.52397 * 182.44223 * 7 6 5 37 37 H 1.08994 * 109.57906 * 62.27683 * 7 6 5 38 38 H 1.08998 * 109.46505 * 305.07634 * 10 8 7 39 39 H 1.09001 * 109.46801 * 185.08035 * 10 8 7 40 40 H 0.96998 * 120.00192 * 359.97438 * 11 10 8 41 41 H 1.09001 * 109.46980 * 59.99839 * 14 12 11 42 42 H 1.09001 * 109.47354 * 299.99360 * 14 12 11 43 43 H 1.09001 * 109.47002 * 60.00244 * 15 14 12 44 44 H 1.08993 * 109.46955 * 299.99807 * 15 14 12 45 45 H 0.97001 * 119.99934 * 359.97438 * 19 18 16 46 46 H 1.09002 * 109.42677 * 65.80579 * 24 4 2 47 47 H 1.09009 * 109.49488 * 305.83748 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5692 -0.0123 2.4205 6 6 1.9725 -0.8380 3.6443 7 6 3.4944 -1.0048 3.6624 8 6 3.9424 -1.6717 2.3590 9 1 3.5009 -2.6657 2.2883 10 6 5.4680 -1.7879 2.3427 11 7 5.8999 -2.6955 3.4084 12 6 7.2113 -2.9510 3.5856 13 8 8.0338 -2.4299 2.8624 14 6 7.6557 -3.8851 4.6815 15 6 9.1812 -4.0013 4.6653 16 6 9.6256 -4.9349 5.7616 17 1 8.8932 -5.3993 6.4053 18 6 10.9671 -5.1970 5.9423 19 7 11.8590 -4.6319 5.1582 20 14 11.5179 -6.3548 7.3008 21 1 12.9986 -6.4674 7.2851 22 1 10.9167 -7.6951 7.0829 23 1 11.0764 -5.8219 8.6147 24 6 3.4820 -0.8227 1.1719 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.4849 0.0962 2.3969 33 1 2.0317 0.9730 2.4787 34 1 1.4995 -1.8186 3.5936 35 1 1.6518 -0.3251 4.5511 36 1 3.7825 -1.6288 4.5086 37 1 3.9679 -0.0272 3.7529 38 1 5.9090 -0.8040 2.5023 39 1 5.7922 -2.1794 1.3784 40 1 5.2422 -3.1120 3.9870 41 1 7.2150 -4.8691 4.5211 42 1 7.3310 -3.4943 5.6459 43 1 9.6223 -3.0174 4.8255 44 1 9.5056 -4.3923 3.7010 45 1 11.5730 -4.0310 4.4525 46 1 3.9354 0.1666 1.2354 47 1 3.7870 -1.3028 0.2419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330880284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:53 Heat of formation + Delta-G solvation = -68.387458 kcal Electronic energy + Delta-G solvation = -22351.385316 eV Core-core repulsion = 19146.585699 eV Total energy + Delta-G solvation = -3204.799618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.12553 -39.04178 -36.29616 -34.01999 -33.70807 -31.68321 -30.92803 -30.38184 -27.67821 -26.44661 -24.96879 -24.15979 -22.66301 -21.70299 -20.49946 -19.76470 -19.45175 -17.00153 -16.64145 -15.92765 -15.89172 -15.31965 -15.21332 -14.91691 -14.60343 -14.27050 -13.98154 -13.69387 -13.58322 -13.30043 -13.13200 -12.71244 -12.50744 -12.31304 -12.13743 -12.06631 -11.91403 -11.68737 -11.46196 -11.38344 -11.06503 -10.90957 -10.80037 -10.59489 -10.53263 -10.11987 -10.08223 -9.90019 -9.24827 -8.80215 -8.59268 -8.50545 -8.26203 -6.29603 -3.99504 3.20940 3.34561 3.46643 3.49271 3.67943 3.69802 4.39991 4.42008 4.54506 4.59739 4.61529 4.74976 4.88183 4.91163 5.00726 5.07055 5.18815 5.25070 5.27498 5.36897 5.41137 5.44556 5.46961 5.48064 5.52246 5.57018 5.64969 5.72890 5.79323 5.82669 5.86231 5.89651 6.00505 6.13919 6.15088 6.17759 6.68199 6.77979 6.79033 6.80369 7.54986 7.60398 7.85257 8.22597 8.52200 8.73120 8.94843 9.74165 11.11345 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046219 B = 0.002477 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.662096 B =11300.279319 C =11651.552055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.189 4.189 4 N -0.530 5.530 5 C 0.049 3.951 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.094 4.094 9 H 0.085 0.915 10 C 0.125 3.875 11 N -0.741 5.741 12 C 0.509 3.491 13 O -0.539 6.539 14 C -0.123 4.123 15 C 0.024 3.976 16 C -0.608 4.608 17 H 0.049 0.951 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 1.070 2.930 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.288 1.288 24 C 0.062 3.938 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.397 0.603 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.014 0.986 44 H 0.014 0.986 45 H 0.272 0.728 46 H 0.039 0.961 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.324 10.400 -7.754 29.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.254 5.254 5 C -0.079 4.079 6 C -0.154 4.154 7 C -0.155 4.155 8 C -0.113 4.113 9 H 0.104 0.896 10 C 0.000 4.000 11 N -0.395 5.395 12 C 0.297 3.703 13 O -0.415 6.415 14 C -0.163 4.163 15 C -0.013 4.013 16 C -0.647 4.647 17 H 0.067 0.933 18 C -0.190 4.190 19 N -0.547 5.547 20 Si 0.899 3.101 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.215 1.215 24 C -0.066 4.066 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.231 0.769 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.032 0.968 44 H 0.032 0.968 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.569 9.629 -7.593 27.459 hybrid contribution -1.421 1.406 -0.479 2.056 sum -25.989 11.035 -8.072 29.366 Atomic orbital electron populations 1.21874 0.94276 1.02477 1.01611 1.21703 0.95777 0.92420 0.93393 1.22496 1.01711 0.98166 1.02372 1.62122 1.10731 1.50810 1.01782 1.22183 1.00424 0.95525 0.89750 1.21587 0.95988 1.01002 0.96864 1.21657 0.95655 1.00978 0.97229 1.21398 0.94282 1.00619 0.95040 0.89619 1.21214 0.92896 0.94304 0.91541 1.46152 1.08184 1.49354 1.35794 1.21531 0.81181 0.81863 0.85723 1.90655 1.52378 1.51467 1.47018 1.21716 1.02063 0.97232 0.95299 1.19011 0.87737 0.97217 0.97369 1.22038 0.94765 1.30260 1.17590 0.93279 1.25858 0.93128 0.99022 1.01014 1.70733 1.36594 1.28823 1.18537 0.83533 0.76209 0.75451 0.74934 1.20786 1.21472 1.21491 1.22011 0.87317 0.98722 0.98534 0.92307 0.91779 0.92556 0.89914 0.92368 0.92061 0.92351 0.90511 0.94656 0.91045 0.91526 0.91420 0.92020 0.92011 0.91801 0.76883 0.90107 0.90147 0.96779 0.96750 0.91741 0.94274 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.00 37.16 0.33 -0.53 16 2 C 0.08 0.53 2.96 -67.71 -0.20 0.33 16 3 C -0.19 -1.25 8.50 37.16 0.32 -0.93 16 4 N -0.53 -4.29 4.64 -226.68 -1.05 -5.34 16 5 C 0.05 0.36 4.63 -3.83 -0.02 0.35 16 6 C -0.12 -0.87 6.09 -26.65 -0.16 -1.04 16 7 C -0.12 -1.01 5.13 -26.61 -0.14 -1.15 16 8 C -0.09 -0.88 2.39 -90.54 -0.22 -1.09 16 9 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 10 C 0.13 1.55 5.07 -4.04 -0.02 1.53 16 11 N -0.74 -10.46 5.31 -60.29 -0.32 -10.78 16 12 C 0.51 9.96 7.83 -10.98 -0.09 9.87 16 13 O -0.54 -12.91 15.98 5.56 0.09 -12.82 16 14 C -0.12 -2.56 5.64 -27.88 -0.16 -2.72 16 15 C 0.02 0.66 3.57 -27.88 -0.10 0.56 16 16 C -0.61 -17.75 9.11 -34.44 -0.31 -18.06 16 17 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 18 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 19 N -0.91 -29.17 13.65 55.43 0.76 -28.41 16 20 Si 1.07 25.72 29.90 -169.99 -5.08 20.63 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 24 C 0.06 0.55 4.32 -3.84 -0.02 0.53 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.33 6.30 -51.93 -0.33 0.00 16 28 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 29 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.39 6.52 -51.93 -0.34 0.06 16 32 H 0.08 0.52 6.04 -51.93 -0.31 0.21 16 33 H 0.04 0.28 6.62 -51.93 -0.34 -0.07 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.58 7.26 -51.92 -0.38 0.21 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.40 4.47 7.67 -40.82 -0.31 4.16 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 44 H 0.01 0.42 7.96 -51.93 -0.41 0.01 16 45 H 0.27 8.85 7.22 -40.82 -0.29 8.55 16 46 H 0.04 0.35 6.73 -51.93 -0.35 0.00 16 47 H 0.08 0.67 8.07 -51.92 -0.42 0.25 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -34.29 360.90 -9.57 -43.85 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -8.52 Total: -0.54 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -0.87 Total: -12.03 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.61 Total: -44.53 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.29 -9.57 -43.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330880284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.535 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds