Wall clock time and date at job start Tue Mar 31 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46894 * 109.47515 * 239.99632 * 2 1 3 5 5 C 1.46848 * 110.99689 * 66.04595 * 4 2 1 6 6 C 1.53042 * 109.52370 * 185.84168 * 5 4 2 7 7 C 1.53123 * 109.27728 * 300.82317 * 6 5 4 8 8 C 1.53117 * 109.16210 * 57.65195 * 7 6 5 9 9 H 1.09001 * 109.50178 * 62.32982 * 8 7 6 10 10 C 1.53004 * 109.50185 * 182.40538 * 8 7 6 11 11 N 1.46498 * 109.47018 * 295.00011 * 10 8 7 12 12 C 1.34774 * 119.99958 * 180.02562 * 11 10 8 13 13 O 1.21285 * 119.99969 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00143 * 180.02562 * 12 11 10 15 15 C 1.53002 * 109.47421 * 180.02562 * 14 12 11 16 16 C 1.50692 * 109.47689 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99539 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00344 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00038 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99967 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47013 * 60.00396 * 20 18 16 22 22 H 1.48505 * 109.47016 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47538 * 300.00590 * 20 18 16 24 24 C 1.46840 * 111.00553 * 190.25549 * 4 2 1 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 1.09003 * 109.46464 * 305.85385 * 5 4 2 33 33 H 1.08999 * 109.46416 * 65.83857 * 5 4 2 34 34 H 1.09003 * 109.50046 * 60.75926 * 6 5 4 35 35 H 1.08996 * 109.50678 * 180.88362 * 6 5 4 36 36 H 1.09002 * 109.52239 * 177.55736 * 7 6 5 37 37 H 1.09006 * 109.52136 * 297.74688 * 7 6 5 38 38 H 1.08996 * 109.47035 * 55.00126 * 10 8 7 39 39 H 1.08996 * 109.46468 * 175.00050 * 10 8 7 40 40 H 0.97001 * 120.00354 * 0.02562 * 11 10 8 41 41 H 1.09006 * 109.47122 * 299.99573 * 14 12 11 42 42 H 1.08991 * 109.47488 * 59.99467 * 14 12 11 43 43 H 1.09006 * 109.46586 * 299.99855 * 15 14 12 44 44 H 1.09001 * 109.47382 * 59.99141 * 15 14 12 45 45 H 0.97003 * 120.00092 * 179.97438 * 19 18 16 46 46 H 1.09008 * 109.46446 * 294.17696 * 24 4 2 47 47 H 1.09002 * 109.46391 * 54.14559 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 1.6704 0.0516 -2.4161 6 6 2.0657 -0.7669 -3.6474 7 6 3.5715 -1.0420 -3.6094 8 6 3.9159 -1.7749 -2.3099 9 1 3.4029 -2.7363 -2.2874 10 6 5.4274 -2.0006 -2.2360 11 7 5.8392 -2.9057 -3.3119 12 6 7.1355 -3.2501 -3.4436 13 8 7.9612 -2.8104 -2.6717 14 6 7.5591 -4.1807 -4.5506 15 6 9.0704 -4.4076 -4.4759 16 6 9.4940 -5.3386 -5.5825 17 1 8.7587 -5.7299 -6.2701 18 6 10.8201 -5.6911 -5.7171 19 7 11.7153 -5.2151 -4.8795 20 14 11.3450 -6.8458 -7.0885 21 1 10.9985 -6.2448 -8.4015 22 1 12.8121 -7.0649 -7.0167 23 1 10.6420 -8.1451 -6.9379 24 6 3.4669 -0.9271 -1.1176 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.5963 0.2369 -2.4328 33 1 2.2032 1.0024 -2.4260 34 1 1.5229 -1.7122 -3.6455 35 1 1.8206 -0.2076 -4.5502 36 1 3.8502 -1.6615 -4.4619 37 1 4.1153 -0.0982 -3.6505 38 1 5.9430 -1.0467 -2.3464 39 1 5.6821 -2.4419 -1.2725 40 1 5.1788 -3.2571 -3.9294 41 1 7.0431 -5.1346 -4.4409 42 1 7.3049 -3.7389 -5.5140 43 1 9.5867 -3.4539 -4.5854 44 1 9.3243 -4.8496 -3.5124 45 1 12.6483 -5.4634 -4.9740 46 1 3.9913 0.0284 -1.1334 47 1 3.6979 -1.4527 -0.1909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330880285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:56 Heat of formation + Delta-G solvation = -64.438336 kcal Electronic energy + Delta-G solvation = -22306.507927 eV Core-core repulsion = 19101.879556 eV Total energy + Delta-G solvation = -3204.628371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.07377 -38.93978 -36.23818 -33.92026 -33.40506 -31.62691 -30.96419 -30.43548 -27.61424 -26.59831 -25.20611 -24.22283 -22.64558 -21.45830 -20.43397 -19.63576 -19.37558 -16.90672 -16.49353 -15.85716 -15.55979 -15.23008 -15.15608 -14.88636 -14.51740 -14.42926 -14.19775 -13.89513 -13.44084 -13.24209 -12.89437 -12.63463 -12.43584 -12.32060 -12.16114 -12.01071 -11.82183 -11.65567 -11.36403 -11.12892 -11.03576 -10.89707 -10.86202 -10.62185 -10.53867 -10.49512 -9.91665 -9.62973 -9.14947 -8.97345 -8.71699 -8.56415 -8.29126 -5.93427 -3.97806 3.32153 3.36192 3.38802 3.41011 3.43128 3.76021 4.42888 4.45828 4.50032 4.58407 4.64818 4.78901 4.91469 4.94513 5.04719 5.10844 5.21599 5.28927 5.31153 5.40803 5.41231 5.45897 5.48127 5.50862 5.58645 5.60182 5.68370 5.78137 5.82185 5.87246 5.89928 5.93924 6.05860 6.20757 6.27488 6.29094 6.75939 6.81914 6.84990 6.93837 7.76973 7.89919 7.95338 8.10439 8.41895 8.84495 9.10902 9.65445 11.17504 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046271 B = 0.002465 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.984685 B =11355.928197 C =11692.609248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 C -0.188 4.188 4 N -0.530 5.530 5 C 0.050 3.950 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.094 4.094 9 H 0.085 0.915 10 C 0.125 3.875 11 N -0.742 5.742 12 C 0.509 3.491 13 O -0.537 6.537 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.063 3.937 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.396 0.604 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.261 0.739 46 H 0.038 0.962 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.268 12.015 7.152 28.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.254 5.254 5 C -0.078 4.078 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.113 4.113 9 H 0.104 0.896 10 C 0.001 3.999 11 N -0.397 5.397 12 C 0.297 3.703 13 O -0.412 6.412 14 C -0.170 4.170 15 C 0.000 4.000 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.066 4.066 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.230 0.770 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.682 11.880 7.749 28.467 hybrid contribution 0.440 0.072 -0.951 1.050 sum -24.242 11.952 6.798 27.870 Atomic orbital electron populations 1.21839 0.94270 1.02438 1.01502 1.21700 0.95837 0.92465 0.93324 1.22494 1.01628 0.98163 1.02387 1.62121 1.13849 1.47613 1.01853 1.22170 1.00678 0.95112 0.89829 1.21594 0.96255 1.00832 0.96786 1.21660 0.95905 1.00601 0.97342 1.21396 0.94797 1.00150 0.94978 0.89635 1.21199 0.93081 0.94245 0.91416 1.46180 1.09533 1.50447 1.33507 1.21547 0.80986 0.81327 0.86441 1.90666 1.51385 1.54449 1.44692 1.21856 1.03044 0.97039 0.95061 1.18889 0.86280 0.97417 0.97454 1.21195 0.93088 1.28427 1.13838 0.92664 1.25031 0.96804 0.96377 0.96226 1.69991 1.01910 1.44289 1.36683 0.86646 0.77439 0.81329 0.82467 1.20271 1.21308 1.20252 1.22013 0.87403 0.98665 0.98494 0.91810 0.92655 0.92378 0.89979 0.92462 0.92251 0.92098 0.90676 0.94582 0.91068 0.91555 0.91379 0.92022 0.92043 0.91837 0.76967 0.90292 0.90326 0.95872 0.95852 0.92915 0.94348 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.13 37.16 0.34 -0.53 16 2 C 0.08 0.53 2.92 -67.71 -0.20 0.33 16 3 C -0.19 -1.25 8.45 37.16 0.31 -0.93 16 4 N -0.53 -4.32 4.60 -226.69 -1.04 -5.36 16 5 C 0.05 0.37 4.54 -3.83 -0.02 0.36 16 6 C -0.12 -0.88 6.09 -26.65 -0.16 -1.04 16 7 C -0.12 -1.02 5.13 -26.61 -0.14 -1.15 16 8 C -0.09 -0.88 2.39 -90.54 -0.22 -1.10 16 9 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 10 C 0.13 1.56 5.07 -4.04 -0.02 1.54 16 11 N -0.74 -10.50 5.31 -60.30 -0.32 -10.82 16 12 C 0.51 9.97 7.83 -10.99 -0.09 9.89 16 13 O -0.54 -12.96 15.98 5.55 0.09 -12.87 16 14 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 15 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 16 C -0.53 -15.14 9.11 -34.44 -0.31 -15.46 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16 20 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.06 0.55 4.42 -3.84 -0.02 0.53 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.33 6.44 -51.93 -0.33 -0.01 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.59 7.98 -51.93 -0.41 0.17 16 29 H 0.06 0.42 6.82 -51.93 -0.35 0.07 16 30 H 0.06 0.40 6.46 -51.93 -0.34 0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.52 6.22 -51.93 -0.32 0.19 16 33 H 0.04 0.28 6.58 -51.93 -0.34 -0.06 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.59 7.25 -51.93 -0.38 0.21 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.40 4.46 7.67 -40.82 -0.31 4.15 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.04 0.35 6.88 -51.92 -0.36 -0.01 16 47 H 0.08 0.68 8.01 -51.93 -0.42 0.26 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -33.63 362.59 -9.58 -43.21 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.60 Total: -1.54 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.89 Total: -7.91 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.63 Total: -43.20 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.63 -9.58 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330880285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.230 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds