Wall clock time and date at job start Tue Mar 31 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46894 * 109.47515 * 239.99632 * 2 1 3 5 5 C 1.46848 * 110.99689 * 66.04595 * 4 2 1 6 6 C 1.53042 * 109.52370 * 185.84168 * 5 4 2 7 7 C 1.53123 * 109.27728 * 300.82317 * 6 5 4 8 8 C 1.53117 * 109.16210 * 57.65195 * 7 6 5 9 9 H 1.09001 * 109.50178 * 62.32982 * 8 7 6 10 10 C 1.53004 * 109.50185 * 182.40538 * 8 7 6 11 11 N 1.46498 * 109.47018 * 295.00011 * 10 8 7 12 12 C 1.34774 * 119.99958 * 180.02562 * 11 10 8 13 13 O 1.21285 * 119.99969 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00143 * 180.02562 * 12 11 10 15 15 C 1.53002 * 109.47421 * 180.02562 * 14 12 11 16 16 C 1.50692 * 109.47689 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99539 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00344 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00038 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99967 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47013 * 60.00396 * 20 18 16 22 22 H 1.48505 * 109.47016 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47538 * 300.00590 * 20 18 16 24 24 C 1.46840 * 111.00553 * 190.25549 * 4 2 1 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 1.09003 * 109.46464 * 305.85385 * 5 4 2 33 33 H 1.08999 * 109.46416 * 65.83857 * 5 4 2 34 34 H 1.09003 * 109.50046 * 60.75926 * 6 5 4 35 35 H 1.08996 * 109.50678 * 180.88362 * 6 5 4 36 36 H 1.09002 * 109.52239 * 177.55736 * 7 6 5 37 37 H 1.09006 * 109.52136 * 297.74688 * 7 6 5 38 38 H 1.08996 * 109.47035 * 55.00126 * 10 8 7 39 39 H 1.08996 * 109.46468 * 175.00050 * 10 8 7 40 40 H 0.97001 * 120.00354 * 0.02562 * 11 10 8 41 41 H 1.09006 * 109.47122 * 299.99573 * 14 12 11 42 42 H 1.08991 * 109.47488 * 59.99467 * 14 12 11 43 43 H 1.09006 * 109.46586 * 299.99855 * 15 14 12 44 44 H 1.09001 * 109.47382 * 59.99141 * 15 14 12 45 45 H 0.97003 * 120.00092 * 179.97438 * 19 18 16 46 46 H 1.09008 * 109.46446 * 294.17696 * 24 4 2 47 47 H 1.09002 * 109.46391 * 54.14559 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 1.6704 0.0516 -2.4161 6 6 2.0657 -0.7669 -3.6474 7 6 3.5715 -1.0420 -3.6094 8 6 3.9159 -1.7749 -2.3099 9 1 3.4029 -2.7363 -2.2874 10 6 5.4274 -2.0006 -2.2360 11 7 5.8392 -2.9057 -3.3119 12 6 7.1355 -3.2501 -3.4436 13 8 7.9612 -2.8104 -2.6717 14 6 7.5591 -4.1807 -4.5506 15 6 9.0704 -4.4076 -4.4759 16 6 9.4940 -5.3386 -5.5825 17 1 8.7587 -5.7299 -6.2701 18 6 10.8201 -5.6911 -5.7171 19 7 11.7153 -5.2151 -4.8795 20 14 11.3450 -6.8458 -7.0885 21 1 10.9985 -6.2448 -8.4015 22 1 12.8121 -7.0649 -7.0167 23 1 10.6420 -8.1451 -6.9379 24 6 3.4669 -0.9271 -1.1176 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.5963 0.2369 -2.4328 33 1 2.2032 1.0024 -2.4260 34 1 1.5229 -1.7122 -3.6455 35 1 1.8206 -0.2076 -4.5502 36 1 3.8502 -1.6615 -4.4619 37 1 4.1153 -0.0982 -3.6505 38 1 5.9430 -1.0467 -2.3464 39 1 5.6821 -2.4419 -1.2725 40 1 5.1788 -3.2571 -3.9294 41 1 7.0431 -5.1346 -4.4409 42 1 7.3049 -3.7389 -5.5140 43 1 9.5867 -3.4539 -4.5854 44 1 9.3243 -4.8496 -3.5124 45 1 12.6483 -5.4634 -4.9740 46 1 3.9913 0.0284 -1.1334 47 1 3.6979 -1.4527 -0.1909 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330880285.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:55 Heat of formation + Delta-G solvation = -87.445003 kcal Electronic energy + Delta-G solvation = -22307.505571 eV Core-core repulsion = 19101.879556 eV Total energy + Delta-G solvation = -3205.626015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.99074 -40.24722 -37.17102 -35.56046 -34.95139 -33.10584 -32.18791 -31.29904 -28.26871 -28.02474 -26.56358 -25.08596 -23.62810 -23.08362 -21.38697 -20.89644 -20.14681 -18.79814 -17.52799 -17.19966 -16.87060 -16.59318 -16.42728 -15.94403 -15.50967 -15.48367 -14.99607 -14.80640 -14.68114 -14.19315 -14.15402 -13.95054 -13.75302 -13.23129 -13.12894 -13.04911 -12.87805 -12.75793 -12.61979 -12.49286 -12.24158 -12.00864 -11.89865 -11.64569 -11.63052 -11.59367 -11.31608 -11.24409 -11.20272 -10.70659 -10.55591 -10.04693 -9.20344 -8.17159 -6.31425 1.42526 1.47324 1.54995 1.73627 2.24495 2.45447 2.95236 3.15524 3.71216 3.76601 3.88343 4.01522 4.11191 4.17499 4.26184 4.35640 4.38440 4.43627 4.50367 4.52755 4.58591 4.61668 4.67212 4.75401 4.81471 4.83869 4.87949 4.93409 5.04435 5.07586 5.11010 5.13323 5.19374 5.27478 5.31427 5.40721 5.45661 5.50135 5.55786 5.64179 5.86291 6.17256 6.18496 6.22317 6.63510 6.87067 7.36776 7.39212 8.95359 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046271 B = 0.002465 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.984685 B =11355.928197 C =11692.609248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 C -0.183 4.183 4 N -0.534 5.534 5 C 0.049 3.951 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.080 4.080 9 H 0.091 0.909 10 C 0.126 3.874 11 N -0.715 5.715 12 C 0.510 3.490 13 O -0.592 6.592 14 C -0.119 4.119 15 C 0.042 3.958 16 C -0.544 4.544 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.288 1.288 23 H -0.262 1.262 24 C 0.064 3.936 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.415 0.585 41 H 0.105 0.895 42 H 0.105 0.895 43 H -0.019 1.019 44 H -0.019 1.019 45 H 0.263 0.737 46 H 0.033 0.967 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.838 11.424 5.598 30.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.036 4.036 3 C -0.242 4.242 4 N -0.259 5.259 5 C -0.078 4.078 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.099 4.099 9 H 0.109 0.891 10 C 0.002 3.998 11 N -0.369 5.369 12 C 0.298 3.702 13 O -0.472 6.472 14 C -0.159 4.159 15 C 0.004 3.996 16 C -0.581 4.581 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.799 3.201 21 H -0.186 1.186 22 H -0.214 1.214 23 H -0.186 1.186 24 C -0.064 4.064 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.123 0.877 42 H 0.123 0.877 43 H -0.001 1.001 44 H 0.000 1.000 45 H 0.071 0.929 46 H 0.051 0.949 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -27.341 11.291 6.175 30.218 hybrid contribution 1.195 0.312 -0.404 1.300 sum -26.145 11.603 5.770 29.181 Atomic orbital electron populations 1.21797 0.93258 1.02303 1.02179 1.21766 0.96590 0.92491 0.92769 1.22444 1.00871 0.98031 1.02857 1.62142 1.12984 1.48160 1.02571 1.22210 1.01232 0.94852 0.89541 1.21566 0.95048 1.01060 0.97290 1.21663 0.96906 1.00130 0.96779 1.21265 0.92036 1.00701 0.95894 0.89073 1.21287 0.95305 0.93004 0.90193 1.45868 1.07965 1.49334 1.33684 1.21345 0.82212 0.80986 0.85644 1.90654 1.53331 1.56619 1.46615 1.21632 0.98409 0.98995 0.96849 1.18687 0.90830 0.94834 0.95244 1.21696 0.93882 1.28357 1.14213 0.90521 1.26168 0.96966 0.98317 0.99163 1.70178 1.02376 1.46146 1.39134 0.85353 0.76797 0.79053 0.78906 1.18648 1.21390 1.18644 1.21945 0.88138 0.98243 0.98085 0.92305 0.92366 0.91334 0.90281 0.93552 0.92183 0.91209 0.89680 0.94962 0.90945 0.90376 0.90986 0.92825 0.93191 0.92813 0.74712 0.87726 0.87709 1.00053 1.00046 0.92871 0.94924 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.13 71.98 0.66 -0.76 16 2 C 0.07 0.92 2.92 44.92 0.13 1.05 16 3 C -0.18 -2.23 8.45 71.98 0.61 -1.62 16 4 N -0.53 -7.90 4.60 -871.12 -4.01 -11.91 16 5 C 0.05 0.64 4.54 86.33 0.39 1.04 16 6 C -0.11 -1.42 6.09 30.65 0.19 -1.23 16 7 C -0.12 -1.81 5.13 30.67 0.16 -1.65 16 8 C -0.08 -1.38 2.39 -10.74 -0.03 -1.41 16 9 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 10 C 0.13 3.11 5.07 86.38 0.44 3.54 16 11 N -0.71 -19.37 5.31 -463.07 -2.46 -21.83 16 12 C 0.51 20.05 7.83 87.66 0.69 20.74 16 13 O -0.59 -29.81 15.98 -3.05 -0.05 -29.86 16 14 C -0.12 -4.83 5.64 29.85 0.17 -4.66 16 15 C 0.04 2.36 4.26 29.85 0.13 2.49 16 16 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 17 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 18 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 19 N -0.94 -60.25 13.29 21.45 0.28 -59.97 16 20 Si 0.98 44.61 29.54 68.60 2.03 46.63 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 C 0.06 1.08 4.42 86.33 0.38 1.46 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.57 6.44 -2.39 -0.02 0.55 16 27 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.08 1.06 7.98 -2.39 -0.02 1.04 16 29 H 0.05 0.66 6.82 -2.39 -0.02 0.64 16 30 H 0.06 0.72 6.46 -2.39 -0.02 0.70 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.97 6.22 -2.39 -0.01 0.95 16 33 H 0.03 0.46 6.58 -2.39 -0.02 0.44 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 1.06 7.25 -2.39 -0.02 1.04 16 37 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.42 8.24 7.67 -92.71 -0.71 7.53 16 41 H 0.10 3.71 8.14 -2.38 -0.02 3.69 16 42 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 43 H -0.02 -1.22 8.10 -2.38 -0.02 -1.23 16 44 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 45 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 46 H 0.03 0.59 6.88 -2.38 -0.02 0.57 16 47 H 0.08 1.28 8.01 -2.39 -0.02 1.26 16 Total: -1.00 -75.69 362.59 0.61 -75.08 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.21 Total: 13.96 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 4.60 Total: -12.10 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -6.18 Total: -93.71 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.05 Total: -29.86 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -75.69 0.61 -75.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330880285.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.369 kcal (2) G-P(sol) polarization free energy of solvation -75.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds