Wall clock time and date at job start Tue Mar 31 2020 05:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47383 * 2 1 4 4 H 1.09001 * 109.47125 * 304.99917 * 3 2 1 5 5 C 1.53002 * 109.47015 * 64.99725 * 3 2 1 6 6 C 1.53000 * 109.47181 * 184.99847 * 3 2 1 7 7 C 1.50698 * 109.47057 * 174.99943 * 6 3 2 8 8 O 1.21282 * 120.00325 * 0.02562 * 7 6 3 9 9 N 1.34783 * 119.99888 * 179.97438 * 7 6 3 10 10 C 1.46491 * 119.99949 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53042 * 109.45907 * 295.02805 * 11 10 9 13 13 C 1.53194 * 109.30742 * 178.60325 * 12 11 10 14 14 N 1.46924 * 108.77030 * 54.65543 * 13 12 11 15 15 C 1.36940 * 120.62899 * 126.40207 * 14 13 12 16 16 H 1.08001 * 119.99931 * 331.82662 * 15 14 13 17 17 C 1.38812 * 119.99757 * 151.82307 * 15 14 13 18 18 N 1.31624 * 120.00032 * 343.08153 * 17 15 14 19 19 Si 1.86800 * 119.99939 * 163.08100 * 17 15 14 20 20 H 1.48496 * 109.47194 * 59.99743 * 19 17 15 21 21 H 1.48499 * 109.46875 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46748 * 299.99998 * 19 17 15 23 23 C 1.46926 * 118.73613 * 306.38371 * 14 13 12 24 24 C 1.53042 * 109.45870 * 174.97378 * 11 10 9 25 25 H 1.09004 * 109.47150 * 300.00329 * 1 2 3 26 26 H 1.09003 * 109.46867 * 60.00107 * 1 2 3 27 27 H 1.08998 * 109.47304 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47150 * 239.99671 * 2 1 3 29 29 H 1.09003 * 109.46867 * 119.99893 * 2 1 3 30 30 H 1.09001 * 109.47018 * 60.00126 * 5 3 2 31 31 H 1.09002 * 109.47207 * 299.99845 * 5 3 2 32 32 H 1.09004 * 109.47022 * 179.97438 * 5 3 2 33 33 H 1.08999 * 109.47188 * 294.99829 * 6 3 2 34 34 H 1.08994 * 109.47158 * 54.99706 * 6 3 2 35 35 H 0.97002 * 119.99832 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47437 * 300.00728 * 10 9 7 37 37 H 1.09002 * 109.47483 * 60.00036 * 10 9 7 38 38 H 1.08995 * 109.45822 * 55.00162 * 11 10 9 39 39 H 1.09002 * 109.49412 * 298.56219 * 12 11 10 40 40 H 1.08994 * 109.49648 * 58.66112 * 12 11 10 41 41 H 1.09002 * 109.59847 * 294.86282 * 13 12 11 42 42 H 1.09002 * 109.69786 * 174.50755 * 13 12 11 43 43 H 0.96992 * 119.99495 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.58232 * 293.81724 * 23 14 13 45 45 H 1.08999 * 109.70178 * 173.46701 * 23 14 13 46 46 H 1.09005 * 109.50061 * 301.33635 * 24 11 10 47 47 H 1.09003 * 109.50064 * 61.40091 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 4.0571 2.8632 -0.2492 8 8 3.2662 3.7826 -0.2374 9 7 5.3763 3.1106 -0.3718 10 6 5.8547 4.4899 -0.4925 11 6 7.3796 4.4917 -0.6180 12 6 7.9984 3.9595 0.6766 13 6 9.5234 3.9300 0.5344 14 7 9.9884 5.2696 0.1498 15 6 10.9591 5.9064 0.8761 16 1 11.0740 5.6922 1.9284 17 6 11.7953 6.8271 0.2597 18 7 11.8923 6.8527 -1.0527 19 14 12.7830 8.0298 1.2929 20 1 13.6853 7.2774 2.2012 21 1 13.5908 8.9007 0.4017 22 1 11.8575 8.8677 2.0971 23 6 9.3923 5.9128 -1.0291 24 6 7.8688 5.9199 -0.8695 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0699 1.5874 2.1492 31 1 0.5489 2.1253 1.3969 32 1 1.9991 3.1541 1.3075 33 1 4.0030 0.9835 0.7597 34 1 3.8571 0.8799 -1.0112 35 1 6.0089 2.3753 -0.3809 36 1 5.4170 4.9502 -1.3782 37 1 5.5620 5.0548 0.3926 38 1 7.6760 3.8544 -1.4510 39 1 7.7227 4.6108 1.5061 40 1 7.6313 2.9512 0.8676 41 1 9.8050 3.2107 -0.2347 42 1 9.9756 3.6450 1.4843 43 1 12.4763 7.4963 -1.4833 44 1 9.6633 5.3552 -1.9257 45 1 9.7558 6.9370 -1.1121 46 1 7.4095 6.3069 -1.7791 47 1 7.5938 6.5526 -0.0255 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331069775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:45 Heat of formation + Delta-G solvation = -52.880107 kcal Electronic energy + Delta-G solvation = -22531.080165 eV Core-core repulsion = 19326.952996 eV Total energy + Delta-G solvation = -3204.127169 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.95558 -37.95890 -36.54334 -34.87770 -32.87177 -31.17595 -30.62380 -29.73287 -28.09785 -26.49878 -24.47201 -23.60422 -22.22934 -21.10053 -20.56809 -19.93044 -19.08292 -17.09635 -16.63437 -16.01121 -15.67049 -15.16637 -14.81511 -14.48170 -14.09379 -14.00227 -13.70081 -13.51694 -13.24551 -13.08424 -12.73051 -12.38008 -12.34298 -12.14795 -12.06359 -11.78469 -11.54442 -11.33138 -11.04219 -10.98462 -10.83429 -10.77388 -10.71694 -10.50911 -10.25414 -10.22314 -9.96298 -9.73777 -9.53881 -9.40536 -8.93712 -8.46625 -6.67073 -5.79101 -3.21636 2.67711 3.25569 3.38312 3.44125 3.45569 4.49610 4.54098 4.57174 4.65337 4.96954 5.03137 5.13412 5.23490 5.24731 5.36058 5.37680 5.41793 5.45192 5.46800 5.55994 5.60752 5.73215 5.82204 5.84119 5.87257 5.93688 5.99344 6.05252 6.15062 6.20585 6.31427 6.32539 6.44384 6.51883 6.59988 6.69561 6.76444 6.81144 6.97507 7.36548 7.56286 7.65589 7.79096 8.27833 8.45356 9.21468 9.84966 10.41720 11.29414 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.048277 B = 0.002665 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.846536 B =10505.332833 C =10565.327128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.077 0.923 5 C -0.155 4.155 6 C -0.139 4.139 7 C 0.508 3.492 8 O -0.543 6.543 9 N -0.727 5.727 10 C 0.123 3.877 11 C -0.090 4.090 12 C -0.126 4.126 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.172 3.828 24 C -0.133 4.133 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.400 0.600 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.052 0.948 43 H 0.254 0.746 44 H 0.017 0.983 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.709 -12.886 0.832 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.212 4.212 6 C -0.179 4.179 7 C 0.295 3.705 8 O -0.420 6.420 9 N -0.379 5.379 10 C 0.000 4.000 11 C -0.109 4.109 12 C -0.166 4.166 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.046 3.954 24 C -0.173 4.173 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.234 0.766 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.140 -12.097 0.741 21.816 hybrid contribution 0.944 0.249 0.426 1.065 sum -17.196 -11.847 1.166 20.915 Atomic orbital electron populations 1.21808 0.95793 1.01363 1.02103 1.21600 0.96141 0.96194 1.01871 1.20906 0.92803 0.95851 0.99890 0.90466 1.21998 1.01044 1.02270 0.95844 1.21779 0.97782 0.94232 1.04105 1.20695 0.82226 0.91579 0.75998 1.90660 1.54728 1.46728 1.49916 1.46166 1.07416 1.09850 1.74424 1.21555 0.94889 0.81966 1.01615 1.21306 0.91581 0.99275 0.98717 1.22068 0.98785 0.98905 0.96814 1.20889 0.91044 0.88256 0.97937 1.44041 1.42800 1.12982 1.31695 1.19138 1.08279 1.19526 0.91300 0.91813 1.25049 0.97513 1.01605 0.95515 1.70020 1.40147 1.37020 1.07601 0.86369 0.79712 0.81264 0.79425 1.20895 1.21634 1.21026 1.20757 0.86488 0.99891 0.88271 1.22179 1.00785 0.93991 1.00316 0.92390 0.92752 0.92952 0.92060 0.91977 0.93462 0.92822 0.90662 0.89003 0.89074 0.76594 0.91955 0.91750 0.91378 0.92220 0.93503 0.96644 0.92907 0.93582 0.96474 0.89429 0.93105 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.67 37.16 0.36 -0.68 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -0.99 16 3 C -0.08 -0.68 2.04 -90.62 -0.18 -0.87 16 4 H 0.08 0.81 7.96 -51.93 -0.41 0.40 16 5 C -0.15 -1.53 8.69 37.16 0.32 -1.21 16 6 C -0.14 -1.20 5.17 -27.88 -0.14 -1.34 16 7 C 0.51 6.29 7.55 -10.98 -0.08 6.21 16 8 O -0.54 -8.71 13.97 5.56 0.08 -8.63 16 9 N -0.73 -8.60 5.27 -60.30 -0.32 -8.92 16 10 C 0.12 1.74 5.06 -4.05 -0.02 1.72 16 11 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 12 C -0.13 -2.05 5.25 -26.61 -0.14 -2.19 16 13 C 0.15 2.94 6.52 -3.71 -0.02 2.91 16 14 N -0.59 -14.64 2.99 -172.32 -0.52 -15.15 16 15 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 16 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 19 Si 0.90 21.66 29.59 -169.99 -5.03 16.64 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 24 C -0.13 -2.46 5.36 -26.61 -0.14 -2.60 16 25 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 32 H 0.07 0.95 5.95 -51.93 -0.31 0.64 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.40 3.85 7.65 -40.82 -0.31 3.54 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.32 6.07 -51.93 -0.31 2.00 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -30.73 361.18 -9.07 -39.80 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.70 Total: 0.05 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.65 Total: -3.73 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.21 Total: -49.57 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.73 -9.07 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331069775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.079 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds