Wall clock time and date at job start Tue Mar 31 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47383 * 2 1 4 4 H 1.09001 * 109.47125 * 304.99917 * 3 2 1 5 5 C 1.53002 * 109.47015 * 64.99725 * 3 2 1 6 6 C 1.53000 * 109.47181 * 184.99847 * 3 2 1 7 7 C 1.50698 * 109.47057 * 174.99943 * 6 3 2 8 8 O 1.21282 * 120.00325 * 0.02562 * 7 6 3 9 9 N 1.34783 * 119.99888 * 179.97438 * 7 6 3 10 10 C 1.46491 * 119.99949 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.53042 * 109.45907 * 295.02805 * 11 10 9 13 13 C 1.53194 * 109.30742 * 178.60325 * 12 11 10 14 14 N 1.46924 * 108.77030 * 54.65543 * 13 12 11 15 15 C 1.36940 * 120.62899 * 126.40207 * 14 13 12 16 16 H 1.08001 * 119.99931 * 331.82662 * 15 14 13 17 17 C 1.38812 * 119.99757 * 151.82307 * 15 14 13 18 18 N 1.31624 * 120.00032 * 343.08153 * 17 15 14 19 19 Si 1.86800 * 119.99939 * 163.08100 * 17 15 14 20 20 H 1.48496 * 109.47194 * 59.99743 * 19 17 15 21 21 H 1.48499 * 109.46875 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46748 * 299.99998 * 19 17 15 23 23 C 1.46926 * 118.73613 * 306.38371 * 14 13 12 24 24 C 1.53042 * 109.45870 * 174.97378 * 11 10 9 25 25 H 1.09004 * 109.47150 * 300.00329 * 1 2 3 26 26 H 1.09003 * 109.46867 * 60.00107 * 1 2 3 27 27 H 1.08998 * 109.47304 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47150 * 239.99671 * 2 1 3 29 29 H 1.09003 * 109.46867 * 119.99893 * 2 1 3 30 30 H 1.09001 * 109.47018 * 60.00126 * 5 3 2 31 31 H 1.09002 * 109.47207 * 299.99845 * 5 3 2 32 32 H 1.09004 * 109.47022 * 179.97438 * 5 3 2 33 33 H 1.08999 * 109.47188 * 294.99829 * 6 3 2 34 34 H 1.08994 * 109.47158 * 54.99706 * 6 3 2 35 35 H 0.97002 * 119.99832 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47437 * 300.00728 * 10 9 7 37 37 H 1.09002 * 109.47483 * 60.00036 * 10 9 7 38 38 H 1.08995 * 109.45822 * 55.00162 * 11 10 9 39 39 H 1.09002 * 109.49412 * 298.56219 * 12 11 10 40 40 H 1.08994 * 109.49648 * 58.66112 * 12 11 10 41 41 H 1.09002 * 109.59847 * 294.86282 * 13 12 11 42 42 H 1.09002 * 109.69786 * 174.50755 * 13 12 11 43 43 H 0.96992 * 119.99495 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.58232 * 293.81724 * 23 14 13 45 45 H 1.08999 * 109.70178 * 173.46701 * 23 14 13 46 46 H 1.09005 * 109.50061 * 301.33635 * 24 11 10 47 47 H 1.09003 * 109.50064 * 61.40091 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4442 -0.1257 7 6 4.0571 2.8632 -0.2492 8 8 3.2662 3.7826 -0.2374 9 7 5.3763 3.1106 -0.3718 10 6 5.8547 4.4899 -0.4925 11 6 7.3796 4.4917 -0.6180 12 6 7.9984 3.9595 0.6766 13 6 9.5234 3.9300 0.5344 14 7 9.9884 5.2696 0.1498 15 6 10.9591 5.9064 0.8761 16 1 11.0740 5.6922 1.9284 17 6 11.7953 6.8271 0.2597 18 7 11.8923 6.8527 -1.0527 19 14 12.7830 8.0298 1.2929 20 1 13.6853 7.2774 2.2012 21 1 13.5908 8.9007 0.4017 22 1 11.8575 8.8677 2.0971 23 6 9.3923 5.9128 -1.0291 24 6 7.8688 5.9199 -0.8695 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0699 1.5874 2.1492 31 1 0.5489 2.1253 1.3969 32 1 1.9991 3.1541 1.3075 33 1 4.0030 0.9835 0.7597 34 1 3.8571 0.8799 -1.0112 35 1 6.0089 2.3753 -0.3809 36 1 5.4170 4.9502 -1.3782 37 1 5.5620 5.0548 0.3926 38 1 7.6760 3.8544 -1.4510 39 1 7.7227 4.6108 1.5061 40 1 7.6313 2.9512 0.8676 41 1 9.8050 3.2107 -0.2347 42 1 9.9756 3.6450 1.4843 43 1 12.4763 7.4963 -1.4833 44 1 9.6633 5.3552 -1.9257 45 1 9.7558 6.9370 -1.1121 46 1 7.4095 6.3069 -1.7791 47 1 7.5938 6.5526 -0.0255 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331069775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:44 Heat of formation + Delta-G solvation = -70.910852 kcal Electronic energy + Delta-G solvation = -22531.862037 eV Core-core repulsion = 19326.952996 eV Total energy + Delta-G solvation = -3204.909040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95311 -39.42210 -37.35306 -36.25882 -34.45929 -32.62613 -31.63820 -31.30754 -29.11547 -27.84522 -25.82466 -24.66479 -23.79901 -22.61869 -21.51346 -20.79575 -20.52143 -18.71731 -17.87787 -17.03456 -16.74636 -16.62500 -15.95872 -15.63774 -15.37664 -15.30002 -14.98011 -14.83426 -14.70359 -14.09229 -13.93323 -13.84703 -13.50249 -13.31487 -13.00935 -12.87206 -12.76879 -12.61854 -12.55304 -12.27893 -12.15294 -12.02326 -11.85048 -11.73444 -11.61195 -11.51170 -11.36819 -11.23297 -11.10124 -10.64590 -10.51225 -9.99325 -8.66702 -7.87354 -5.32374 1.45889 1.48665 1.55085 1.74276 2.30917 2.51225 3.26977 3.71452 3.79849 3.86658 3.89490 3.95958 4.03442 4.09655 4.32313 4.48561 4.52952 4.54191 4.65901 4.70051 4.70658 4.74694 4.77431 4.83655 4.87404 4.93804 4.95280 5.02457 5.14396 5.17071 5.21310 5.26543 5.29044 5.30536 5.34967 5.40346 5.48884 5.55142 5.58451 5.63689 5.65830 5.79022 6.39997 6.65574 7.15796 7.36085 7.88298 8.38924 9.18629 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.048277 B = 0.002665 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.846536 B =10505.332833 C =10565.327128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.075 4.075 4 H 0.056 0.944 5 C -0.152 4.152 6 C -0.132 4.132 7 C 0.504 3.496 8 O -0.584 6.584 9 N -0.719 5.719 10 C 0.137 3.863 11 C -0.077 4.077 12 C -0.113 4.113 13 C 0.139 3.861 14 N -0.613 5.613 15 C -0.263 4.263 16 H 0.065 0.935 17 C -0.052 4.052 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.274 1.274 21 H -0.294 1.294 22 H -0.280 1.280 23 C 0.177 3.823 24 C -0.123 4.123 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.414 0.586 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.087 0.913 41 H 0.019 0.981 42 H 0.051 0.949 43 H 0.250 0.750 44 H -0.001 1.001 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.689 -15.096 1.561 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.094 4.094 4 H 0.075 0.925 5 C -0.209 4.209 6 C -0.171 4.171 7 C 0.293 3.707 8 O -0.465 6.465 9 N -0.371 5.371 10 C 0.012 3.988 11 C -0.096 4.096 12 C -0.152 4.152 13 C 0.014 3.986 14 N -0.336 5.336 15 C -0.393 4.393 16 H 0.082 0.918 17 C -0.247 4.247 18 N -0.581 5.581 19 Si 0.793 3.207 20 H -0.200 1.200 21 H -0.220 1.220 22 H -0.206 1.206 23 C 0.052 3.948 24 C -0.163 4.163 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.251 0.749 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.105 0.895 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.017 0.983 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.125 -14.355 1.486 23.959 hybrid contribution 1.229 0.902 0.200 1.538 sum -17.896 -13.453 1.686 22.452 Atomic orbital electron populations 1.21828 0.95888 1.01929 1.01655 1.21561 0.96056 0.94671 1.02926 1.20890 0.93249 0.96878 0.98411 0.92536 1.21955 1.01311 1.00681 0.96999 1.21828 0.97248 0.91725 1.06311 1.21405 0.81758 0.92795 0.74751 1.90657 1.55743 1.48382 1.51680 1.46045 1.07796 1.09182 1.74119 1.21196 0.93337 0.83374 1.00847 1.21138 0.92556 0.97157 0.98772 1.21918 0.95651 1.01044 0.96576 1.21085 0.93671 0.86072 0.97756 1.44333 1.42740 1.14898 1.31677 1.19469 1.08456 1.19697 0.91687 0.91773 1.25793 0.99049 1.03371 0.96536 1.70170 1.41155 1.37696 1.09057 0.85374 0.78331 0.79065 0.77890 1.19994 1.22029 1.20647 1.20557 0.89506 0.97327 0.87440 1.21984 0.97167 0.96284 1.00814 0.92797 0.93333 0.91857 0.90920 0.90912 0.92312 0.92507 0.93712 0.86718 0.86545 0.74913 0.92431 0.93047 0.90459 0.93348 0.89501 0.96316 0.93015 0.94136 0.98305 0.93153 0.91443 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.67 71.98 0.70 -1.11 16 2 C -0.11 -1.28 5.40 30.59 0.17 -1.11 16 3 C -0.08 -1.21 2.04 -10.79 -0.02 -1.23 16 4 H 0.06 1.14 7.96 -2.39 -0.02 1.12 16 5 C -0.15 -2.84 8.69 71.98 0.63 -2.21 16 6 C -0.13 -1.84 5.17 29.85 0.15 -1.68 16 7 C 0.50 11.41 7.55 87.66 0.66 12.07 16 8 O -0.58 -18.42 13.97 -3.04 -0.04 -18.46 16 9 N -0.72 -14.94 5.27 -463.07 -2.44 -17.38 16 10 C 0.14 3.61 5.06 86.38 0.44 4.04 16 11 C -0.08 -2.26 2.19 -10.77 -0.02 -2.29 16 12 C -0.11 -3.40 5.25 30.67 0.16 -3.24 16 13 C 0.14 5.47 6.52 86.36 0.56 6.03 16 14 N -0.61 -30.49 2.99 -699.09 -2.09 -32.59 16 15 C -0.26 -14.51 9.58 84.03 0.81 -13.70 16 16 H 0.06 3.45 7.89 -2.91 -0.02 3.43 16 17 C -0.05 -2.93 4.92 84.86 0.42 -2.52 16 18 N -0.93 -55.55 11.19 21.65 0.24 -55.31 16 19 Si 0.97 45.16 29.59 68.60 2.03 47.19 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 C 0.18 8.49 5.30 86.36 0.46 8.95 16 24 C -0.12 -4.51 5.36 30.67 0.16 -4.34 16 25 H 0.05 0.66 6.57 -2.38 -0.02 0.64 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.98 6.56 -2.39 -0.02 0.97 16 32 H 0.04 1.12 5.95 -2.38 -0.01 1.11 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.41 6.26 7.65 -92.71 -0.71 5.56 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 1.95 7.15 -2.39 -0.02 1.93 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 43 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.05 2.77 6.07 -2.39 -0.01 2.75 16 46 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 47 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -68.67 361.18 3.17 -65.50 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.21 Total: 13.37 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 5.26 Total: -2.33 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -4.29 Total: -105.27 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.04 Total: -18.46 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -68.67 3.17 -65.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331069775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.407 kcal (2) G-P(sol) polarization free energy of solvation -68.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds