Wall clock time and date at job start Tue Mar 31 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47338 * 2 1 4 4 H 1.08999 * 109.46558 * 55.00060 * 3 2 1 5 5 C 1.52993 * 109.47265 * 295.00117 * 3 2 1 6 6 C 1.53000 * 109.47239 * 174.99847 * 3 2 1 7 7 C 1.50698 * 109.46890 * 185.00225 * 6 3 2 8 8 O 1.21282 * 120.00457 * 359.97438 * 7 6 3 9 9 N 1.34779 * 119.99577 * 180.02562 * 7 6 3 10 10 C 1.46500 * 119.99533 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46845 * 179.97438 * 10 9 7 12 12 C 1.53042 * 109.46231 * 295.02686 * 11 10 9 13 13 C 1.53200 * 109.31189 * 178.60088 * 12 11 10 14 14 N 1.46928 * 108.76458 * 54.65862 * 13 12 11 15 15 C 1.36931 * 120.63184 * 126.40552 * 14 13 12 16 16 H 1.08005 * 119.99911 * 332.60603 * 15 14 13 17 17 C 1.38817 * 119.99988 * 152.60486 * 15 14 13 18 18 N 1.31612 * 119.99866 * 159.34692 * 17 15 14 19 19 Si 1.86799 * 119.99871 * 339.34369 * 17 15 14 20 20 H 1.48493 * 109.47119 * 92.94284 * 19 17 15 21 21 H 1.48501 * 109.47073 * 212.94368 * 19 17 15 22 22 H 1.48501 * 109.47109 * 332.94365 * 19 17 15 23 23 C 1.46933 * 118.73597 * 306.37824 * 14 13 12 24 24 C 1.53041 * 109.46102 * 174.96972 * 11 10 9 25 25 H 1.09006 * 109.47220 * 300.00076 * 1 2 3 26 26 H 1.09003 * 109.47180 * 59.99324 * 1 2 3 27 27 H 1.08996 * 109.47521 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47304 * 240.00521 * 2 1 3 29 29 H 1.08998 * 109.47186 * 119.99937 * 2 1 3 30 30 H 1.09001 * 109.47182 * 300.00033 * 5 3 2 31 31 H 1.09004 * 109.47101 * 59.99570 * 5 3 2 32 32 H 1.08999 * 109.47352 * 179.97438 * 5 3 2 33 33 H 1.08999 * 109.46992 * 305.00410 * 6 3 2 34 34 H 1.08999 * 109.46978 * 64.99786 * 6 3 2 35 35 H 0.96993 * 120.00445 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47489 * 299.99359 * 10 9 7 37 37 H 1.09006 * 109.47525 * 59.99841 * 10 9 7 38 38 H 1.09002 * 109.45900 * 55.00231 * 11 10 9 39 39 H 1.09006 * 109.49529 * 298.56370 * 12 11 10 40 40 H 1.08994 * 109.49543 * 58.66651 * 12 11 10 41 41 H 1.08994 * 109.59633 * 294.86409 * 13 12 11 42 42 H 1.08997 * 109.69935 * 174.50321 * 13 12 11 43 43 H 0.97003 * 119.99997 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.58621 * 293.82386 * 23 14 13 45 45 H 1.08993 * 109.69839 * 173.46923 * 23 14 13 46 46 H 1.08995 * 109.49779 * 301.33872 * 24 11 10 47 47 H 1.09006 * 109.49694 * 61.43873 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5648 1.4443 0.1258 7 6 4.0570 2.8633 0.2493 8 8 3.2661 3.7827 0.2375 9 7 5.3762 3.1108 0.3720 10 6 5.8546 4.4903 0.4915 11 6 7.3794 4.4921 0.6174 12 6 7.7839 3.8077 1.9252 13 6 9.3120 3.7803 2.0311 14 7 9.8205 5.1510 1.8853 15 6 10.6536 5.6901 2.8288 16 1 10.6062 5.3455 3.8513 17 6 11.5591 6.6797 2.4712 18 7 12.0609 7.4761 3.3910 19 14 12.0655 6.8807 0.6844 20 1 11.1865 7.8832 0.0306 21 1 13.4759 7.3410 0.6184 22 1 11.9367 5.5777 -0.0162 23 6 9.4186 5.9320 0.7074 24 6 7.8894 5.9350 0.6161 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0699 1.5876 -2.1491 31 1 0.5489 2.1253 -1.3969 32 1 1.9983 3.1544 -1.3071 33 1 3.8570 0.8800 1.0113 34 1 4.0029 0.9835 -0.7596 35 1 6.0087 2.3755 0.3811 36 1 5.5622 5.0543 -0.3941 37 1 5.4167 4.9513 1.3769 38 1 7.8139 3.9526 -0.2242 39 1 7.3704 4.3611 2.7684 40 1 7.4004 2.7875 1.9356 41 1 9.7220 3.1522 1.2403 42 1 9.6059 3.3830 3.0026 43 1 12.6933 8.1678 3.1411 44 1 9.8375 5.4794 -0.1914 45 1 9.7810 6.9554 0.8040 46 1 7.5810 6.4290 -0.3052 47 1 7.4750 6.4681 1.4718 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331069777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:48 Heat of formation + Delta-G solvation = -46.776422 kcal Electronic energy + Delta-G solvation = -22603.654356 eV Core-core repulsion = 19399.791863 eV Total energy + Delta-G solvation = -3203.862493 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.03754 -38.23674 -36.62699 -35.04106 -32.91102 -31.33725 -30.80447 -30.35496 -28.23358 -26.64704 -24.45054 -23.58999 -22.71668 -21.28902 -20.65353 -20.01040 -19.35308 -17.16599 -16.71824 -16.13107 -15.75860 -15.25719 -15.12537 -14.60549 -14.20959 -14.10070 -13.99261 -13.62873 -13.30154 -13.26101 -12.85172 -12.74472 -12.43473 -12.17495 -12.14126 -11.94541 -11.76566 -11.57666 -11.41154 -11.07776 -10.88330 -10.84577 -10.81292 -10.64249 -10.51483 -10.14480 -9.89698 -9.84141 -9.61480 -9.42689 -9.02791 -8.62712 -6.98502 -5.95515 -3.31159 2.60936 3.16660 3.31166 3.47368 3.50037 4.49464 4.51720 4.52192 4.61312 4.89016 4.93646 4.99111 5.01057 5.10768 5.20423 5.21689 5.30902 5.39806 5.42469 5.43072 5.52124 5.69354 5.69801 5.76750 5.79034 5.80472 5.87394 5.90854 5.97889 6.04921 6.15948 6.16438 6.24235 6.30385 6.38310 6.45736 6.50050 6.61851 6.64301 6.69353 6.95652 7.47498 7.95917 8.20453 8.32332 8.93774 9.71667 10.09654 11.20543 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046639 B = 0.002828 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.210097 B = 9897.254001 C =10109.485475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.139 4.139 7 C 0.509 3.491 8 O -0.541 6.541 9 N -0.728 5.728 10 C 0.123 3.877 11 C -0.091 4.091 12 C -0.129 4.129 13 C 0.148 3.852 14 N -0.606 5.606 15 C -0.260 4.260 16 H 0.085 0.915 17 C 0.022 3.978 18 N -0.908 5.908 19 Si 0.884 3.116 20 H -0.288 1.288 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.126 3.874 24 C -0.126 4.126 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.400 0.600 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.020 0.980 42 H 0.062 0.938 43 H 0.262 0.738 44 H 0.024 0.976 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.412 -14.730 -8.819 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.211 4.211 6 C -0.179 4.179 7 C 0.296 3.704 8 O -0.419 6.419 9 N -0.380 5.380 10 C 0.000 4.000 11 C -0.110 4.110 12 C -0.168 4.168 13 C 0.022 3.978 14 N -0.330 5.330 15 C -0.388 4.388 16 H 0.102 0.898 17 C -0.177 4.177 18 N -0.551 5.551 19 Si 0.714 3.286 20 H -0.216 1.216 21 H -0.232 1.232 22 H -0.196 1.196 23 C 0.001 3.999 24 C -0.166 4.166 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.234 0.766 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.840 -13.926 -8.759 25.012 hybrid contribution 0.785 -0.130 -0.972 1.257 sum -18.054 -14.056 -9.732 24.864 Atomic orbital electron populations 1.21808 0.95766 1.01395 1.02117 1.21598 0.96172 0.96153 1.01879 1.20911 0.92772 0.95908 0.99901 0.90402 1.21994 1.01107 1.02199 0.95837 1.21780 0.97818 0.94157 1.04126 1.20702 0.82162 0.91623 0.75944 1.90666 1.54686 1.46723 1.49787 1.46141 1.07503 1.09725 1.74591 1.21515 0.94547 0.82136 1.01794 1.21302 0.92512 0.98332 0.98867 1.22073 0.99054 0.98731 0.96914 1.20913 0.90797 0.86587 0.99466 1.44353 1.54667 1.09729 1.24248 1.18921 1.11706 1.18323 0.89848 0.89760 1.25289 0.97595 0.97737 0.97062 1.69837 1.33207 1.19055 1.33046 0.86935 0.76803 0.77931 0.86903 1.21624 1.23187 1.19646 1.21320 0.91947 0.96828 0.89825 1.21995 0.98737 0.94561 1.01299 0.92711 0.92410 0.92928 0.92009 0.92011 0.93502 0.92787 0.90703 0.88972 0.89050 0.76581 0.91850 0.91498 0.91239 0.91698 0.93015 0.96159 0.91913 0.92774 0.95828 0.90877 0.92602 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.12 -0.81 5.40 -26.73 -0.14 -0.95 16 3 C -0.08 -0.65 2.04 -90.62 -0.18 -0.84 16 4 H 0.08 0.80 7.96 -51.93 -0.41 0.38 16 5 C -0.15 -1.44 8.69 37.15 0.32 -1.11 16 6 C -0.14 -1.12 5.17 -27.88 -0.14 -1.26 16 7 C 0.51 5.94 7.55 -10.99 -0.08 5.85 16 8 O -0.54 -8.34 13.96 5.56 0.08 -8.26 16 9 N -0.73 -7.92 5.27 -60.29 -0.32 -8.24 16 10 C 0.12 1.61 5.06 -4.04 -0.02 1.59 16 11 C -0.09 -1.30 2.19 -90.58 -0.20 -1.49 16 12 C -0.13 -1.93 5.25 -26.61 -0.14 -2.07 16 13 C 0.15 2.78 6.52 -3.71 -0.02 2.76 16 14 N -0.61 -14.13 2.77 -172.31 -0.48 -14.60 16 15 C -0.26 -7.21 10.03 -15.06 -0.15 -7.37 16 16 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 17 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 18 N -0.91 -27.86 13.97 55.49 0.78 -27.09 16 19 Si 0.88 22.32 24.35 -169.99 -4.14 18.18 16 20 H -0.29 -7.03 6.62 56.52 0.37 -6.66 16 21 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 22 H -0.27 -6.71 6.63 56.52 0.37 -6.33 16 23 C 0.13 2.70 4.20 -3.71 -0.02 2.68 16 24 C -0.13 -2.15 5.36 -26.61 -0.14 -2.29 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.46 6.57 -51.93 -0.34 0.12 16 32 H 0.07 0.89 5.95 -51.93 -0.31 0.58 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 3.43 7.65 -40.82 -0.31 3.12 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 44 H 0.02 0.50 7.07 -51.93 -0.37 0.13 16 45 H 0.07 1.73 4.50 -51.93 -0.23 1.50 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -32.00 354.73 -8.02 -40.03 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.63 Total: -0.77 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.66 Total: -4.60 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.02 Total: -49.93 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.08 Total: -8.26 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.00 -8.02 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331069777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.750 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds