Wall clock time and date at job start Tue Mar 31 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47338 * 2 1 4 4 H 1.08999 * 109.46558 * 55.00060 * 3 2 1 5 5 C 1.52993 * 109.47265 * 295.00117 * 3 2 1 6 6 C 1.53000 * 109.47239 * 174.99847 * 3 2 1 7 7 C 1.50698 * 109.46890 * 185.00225 * 6 3 2 8 8 O 1.21282 * 120.00457 * 359.97438 * 7 6 3 9 9 N 1.34779 * 119.99577 * 180.02562 * 7 6 3 10 10 C 1.46500 * 119.99533 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46845 * 179.97438 * 10 9 7 12 12 C 1.53042 * 109.46231 * 295.02686 * 11 10 9 13 13 C 1.53200 * 109.31189 * 178.60088 * 12 11 10 14 14 N 1.46928 * 108.76458 * 54.65862 * 13 12 11 15 15 C 1.36931 * 120.63184 * 126.40552 * 14 13 12 16 16 H 1.08005 * 119.99911 * 332.60603 * 15 14 13 17 17 C 1.38817 * 119.99988 * 152.60486 * 15 14 13 18 18 N 1.31612 * 119.99866 * 159.34692 * 17 15 14 19 19 Si 1.86799 * 119.99871 * 339.34369 * 17 15 14 20 20 H 1.48493 * 109.47119 * 92.94284 * 19 17 15 21 21 H 1.48501 * 109.47073 * 212.94368 * 19 17 15 22 22 H 1.48501 * 109.47109 * 332.94365 * 19 17 15 23 23 C 1.46933 * 118.73597 * 306.37824 * 14 13 12 24 24 C 1.53041 * 109.46102 * 174.96972 * 11 10 9 25 25 H 1.09006 * 109.47220 * 300.00076 * 1 2 3 26 26 H 1.09003 * 109.47180 * 59.99324 * 1 2 3 27 27 H 1.08996 * 109.47521 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47304 * 240.00521 * 2 1 3 29 29 H 1.08998 * 109.47186 * 119.99937 * 2 1 3 30 30 H 1.09001 * 109.47182 * 300.00033 * 5 3 2 31 31 H 1.09004 * 109.47101 * 59.99570 * 5 3 2 32 32 H 1.08999 * 109.47352 * 179.97438 * 5 3 2 33 33 H 1.08999 * 109.46992 * 305.00410 * 6 3 2 34 34 H 1.08999 * 109.46978 * 64.99786 * 6 3 2 35 35 H 0.96993 * 120.00445 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47489 * 299.99359 * 10 9 7 37 37 H 1.09006 * 109.47525 * 59.99841 * 10 9 7 38 38 H 1.09002 * 109.45900 * 55.00231 * 11 10 9 39 39 H 1.09006 * 109.49529 * 298.56370 * 12 11 10 40 40 H 1.08994 * 109.49543 * 58.66651 * 12 11 10 41 41 H 1.08994 * 109.59633 * 294.86409 * 13 12 11 42 42 H 1.08997 * 109.69935 * 174.50321 * 13 12 11 43 43 H 0.97003 * 119.99997 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.58621 * 293.82386 * 23 14 13 45 45 H 1.08993 * 109.69839 * 173.46923 * 23 14 13 46 46 H 1.08995 * 109.49779 * 301.33872 * 24 11 10 47 47 H 1.09006 * 109.49694 * 61.43873 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5648 1.4443 0.1258 7 6 4.0570 2.8633 0.2493 8 8 3.2661 3.7827 0.2375 9 7 5.3762 3.1108 0.3720 10 6 5.8546 4.4903 0.4915 11 6 7.3794 4.4921 0.6174 12 6 7.7839 3.8077 1.9252 13 6 9.3120 3.7803 2.0311 14 7 9.8205 5.1510 1.8853 15 6 10.6536 5.6901 2.8288 16 1 10.6062 5.3455 3.8513 17 6 11.5591 6.6797 2.4712 18 7 12.0609 7.4761 3.3910 19 14 12.0655 6.8807 0.6844 20 1 11.1865 7.8832 0.0306 21 1 13.4759 7.3410 0.6184 22 1 11.9367 5.5777 -0.0162 23 6 9.4186 5.9320 0.7074 24 6 7.8894 5.9350 0.6161 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0699 1.5876 -2.1491 31 1 0.5489 2.1253 -1.3969 32 1 1.9983 3.1544 -1.3071 33 1 3.8570 0.8800 1.0113 34 1 4.0029 0.9835 -0.7596 35 1 6.0087 2.3755 0.3811 36 1 5.5622 5.0543 -0.3941 37 1 5.4167 4.9513 1.3769 38 1 7.8139 3.9526 -0.2242 39 1 7.3704 4.3611 2.7684 40 1 7.4004 2.7875 1.9356 41 1 9.7220 3.1522 1.2403 42 1 9.6059 3.3830 3.0026 43 1 12.6933 8.1678 3.1411 44 1 9.8375 5.4794 -0.1914 45 1 9.7810 6.9554 0.8040 46 1 7.5810 6.4290 -0.3052 47 1 7.4750 6.4681 1.4718 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331069777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:48 Heat of formation + Delta-G solvation = -67.592786 kcal Electronic energy + Delta-G solvation = -22604.557021 eV Core-core repulsion = 19399.791863 eV Total energy + Delta-G solvation = -3204.765158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97063 -39.61543 -37.38581 -36.32363 -34.50516 -32.94494 -31.89063 -31.54825 -29.20230 -27.87179 -25.68289 -24.76944 -24.10150 -22.77046 -21.52140 -20.91575 -20.55871 -18.79130 -17.93046 -17.28743 -16.92418 -16.51112 -16.01998 -15.89994 -15.47734 -15.24801 -15.05972 -14.90674 -14.76168 -14.43038 -14.13372 -13.84962 -13.66516 -13.41783 -13.37510 -12.96072 -12.77405 -12.66340 -12.54433 -12.24853 -12.16244 -12.11337 -11.73405 -11.73252 -11.58732 -11.51543 -11.37341 -11.28697 -11.19622 -10.73425 -10.59027 -9.99651 -8.91859 -8.16507 -5.47602 1.30277 1.40934 1.50448 1.74165 2.29911 2.41978 3.06040 3.37917 3.78113 3.82648 3.87891 3.88545 3.98203 4.03300 4.31670 4.38470 4.44449 4.48578 4.55030 4.63929 4.65762 4.70090 4.75327 4.77136 4.79281 4.86739 4.89239 4.95058 5.01428 5.10855 5.16660 5.17250 5.20850 5.21922 5.26284 5.27891 5.34210 5.46207 5.56089 5.60427 5.65027 5.87718 6.12987 6.65436 6.93644 7.36341 7.64343 8.04311 9.03592 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046639 B = 0.002828 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.210097 B = 9897.254001 C =10109.485475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.076 4.076 4 H 0.054 0.946 5 C -0.152 4.152 6 C -0.132 4.132 7 C 0.504 3.496 8 O -0.584 6.584 9 N -0.719 5.719 10 C 0.135 3.865 11 C -0.079 4.079 12 C -0.117 4.117 13 C 0.141 3.859 14 N -0.622 5.622 15 C -0.248 4.248 16 H 0.049 0.951 17 C -0.040 4.040 18 N -0.960 5.960 19 Si 0.950 3.050 20 H -0.276 1.276 21 H -0.313 1.313 22 H -0.257 1.257 23 C 0.120 3.880 24 C -0.121 4.121 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.415 0.585 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.091 0.909 41 H 0.042 0.958 42 H 0.051 0.949 43 H 0.261 0.739 44 H 0.038 0.962 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.513 -17.497 -11.236 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.095 4.095 4 H 0.073 0.927 5 C -0.209 4.209 6 C -0.171 4.171 7 C 0.293 3.707 8 O -0.465 6.465 9 N -0.371 5.371 10 C 0.011 3.989 11 C -0.098 4.098 12 C -0.156 4.156 13 C 0.017 3.983 14 N -0.347 5.347 15 C -0.377 4.377 16 H 0.067 0.933 17 C -0.235 4.235 18 N -0.606 5.606 19 Si 0.779 3.221 20 H -0.203 1.203 21 H -0.242 1.242 22 H -0.181 1.181 23 C -0.005 4.005 24 C -0.161 4.161 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.099 0.901 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.964 -16.755 -11.203 28.370 hybrid contribution 1.051 0.693 -0.144 1.267 sum -18.913 -16.063 -11.347 27.285 Atomic orbital electron populations 1.21830 0.95963 1.01916 1.01635 1.21559 0.96004 0.94722 1.02930 1.20893 0.93362 0.96837 0.98430 0.92739 1.21948 1.01288 1.00704 0.96945 1.21824 0.97162 0.91787 1.06334 1.21389 0.81823 0.92745 0.74749 1.90664 1.55776 1.48388 1.51654 1.46017 1.07770 1.09208 1.74127 1.21200 0.93369 0.83441 1.00912 1.21172 0.93214 0.96378 0.99006 1.21950 0.96051 1.00944 0.96684 1.21143 0.93175 0.84330 0.99669 1.44517 1.54348 1.11895 1.23978 1.18871 1.11787 1.17489 0.89584 0.93335 1.25958 0.98247 0.98000 1.01273 1.69979 1.34800 1.20453 1.35376 0.85851 0.75700 0.78633 0.81892 1.20276 1.24189 1.18123 1.21386 0.94800 0.95070 0.89227 1.21893 0.95507 0.96863 1.01832 0.93445 0.92736 0.91879 0.90790 0.91020 0.92162 0.92623 0.93617 0.86670 0.86526 0.74797 0.92055 0.93335 0.89167 0.93772 0.89017 0.94040 0.92996 0.93043 0.94447 0.93676 0.90130 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.67 71.98 0.70 -1.04 16 2 C -0.11 -1.20 5.40 30.59 0.17 -1.03 16 3 C -0.08 -1.15 2.04 -10.79 -0.02 -1.17 16 4 H 0.05 1.08 7.96 -2.39 -0.02 1.06 16 5 C -0.15 -2.62 8.69 71.98 0.63 -2.00 16 6 C -0.13 -1.66 5.17 29.85 0.15 -1.50 16 7 C 0.50 10.56 7.55 87.66 0.66 11.23 16 8 O -0.58 -17.61 13.96 -3.04 -0.04 -17.65 16 9 N -0.72 -13.18 5.27 -463.05 -2.44 -15.62 16 10 C 0.14 3.17 5.06 86.38 0.44 3.61 16 11 C -0.08 -1.98 2.19 -10.77 -0.02 -2.00 16 12 C -0.12 -3.19 5.25 30.68 0.16 -3.03 16 13 C 0.14 5.01 6.52 86.36 0.56 5.57 16 14 N -0.62 -28.55 2.77 -699.07 -1.94 -30.49 16 15 C -0.25 -14.07 10.03 84.04 0.84 -13.23 16 16 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 17 C -0.04 -2.38 5.23 84.86 0.44 -1.94 16 18 N -0.96 -61.03 13.97 21.65 0.30 -60.72 16 19 Si 0.95 46.56 24.35 68.60 1.67 48.23 16 20 H -0.28 -12.81 6.62 99.48 0.66 -12.15 16 21 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 22 H -0.26 -11.83 6.63 99.48 0.66 -11.17 16 23 C 0.12 4.90 4.20 86.36 0.36 5.27 16 24 C -0.12 -3.88 5.36 30.67 0.16 -3.71 16 25 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.05 0.63 6.56 -2.39 -0.02 0.62 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.90 6.57 -2.39 -0.02 0.89 16 32 H 0.04 1.07 5.95 -2.39 -0.01 1.06 16 33 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.12 0.94 8.14 -2.39 -0.02 0.93 16 35 H 0.41 5.11 7.65 -92.71 -0.71 4.40 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.09 1.79 7.15 -2.39 -0.02 1.78 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 43 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.04 1.44 7.07 -2.39 -0.02 1.43 16 45 H 0.05 2.09 4.50 -2.39 -0.01 2.08 16 46 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -72.79 354.73 2.91 -69.88 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.12 Total: 11.37 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 5.23 Total: -4.99 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -4.07 Total: -106.84 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.04 Total: -17.65 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.67 Total: 48.23 kcal Total: -72.79 2.91 -69.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331069777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.286 kcal (2) G-P(sol) polarization free energy of solvation -72.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds