Wall clock time and date at job start Tue Mar 31 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47447 * 2 1 4 4 H 1.08998 * 110.05819 * 53.57638 * 3 2 1 5 5 C 1.54093 * 110.15982 * 292.11208 * 3 2 1 6 6 C 1.54266 * 106.61885 * 240.87971 * 5 3 2 7 7 C 1.54885 * 104.19938 * 336.27778 * 6 5 3 8 8 C 1.54270 * 110.03723 * 174.99888 * 3 2 1 9 9 H 1.09007 * 110.48137 * 24.07792 * 8 3 2 10 10 N 1.46897 * 110.48558 * 261.57289 * 8 3 2 11 11 C 1.46903 * 111.00262 * 156.83389 * 10 8 3 12 12 H 1.09004 * 109.46454 * 35.00138 * 11 10 8 13 13 C 1.52994 * 109.47405 * 275.00237 * 11 10 8 14 14 C 1.50695 * 109.47180 * 155.00045 * 11 10 8 15 15 O 1.21277 * 120.00115 * 5.87657 * 14 11 10 16 16 N 1.34774 * 119.99875 * 185.88320 * 14 11 10 17 17 C 1.46497 * 120.00306 * 4.64578 * 16 14 11 18 18 C 1.46501 * 120.00076 * 184.64281 * 16 14 11 19 19 C 1.50699 * 109.47452 * 89.99910 * 18 16 14 20 20 H 1.08002 * 119.99403 * 359.97438 * 19 18 16 21 21 C 1.37876 * 120.00076 * 180.02562 * 19 18 16 22 22 N 1.31520 * 119.99702 * 179.97438 * 21 19 18 23 23 Si 1.86792 * 120.00216 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47423 * 90.00015 * 23 21 19 25 25 H 1.48498 * 109.47097 * 210.00165 * 23 21 19 26 26 H 1.48499 * 109.47268 * 329.99947 * 23 21 19 27 27 H 1.09007 * 109.47148 * 60.00283 * 1 2 3 28 28 H 1.09000 * 109.47488 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47565 * 300.00655 * 1 2 3 30 30 H 1.09000 * 109.47140 * 239.99276 * 2 1 3 31 31 H 1.09007 * 109.47148 * 119.99717 * 2 1 3 32 32 H 1.08997 * 110.10980 * 121.53581 * 5 3 2 33 33 H 1.08999 * 109.92253 * 0.11955 * 5 3 2 34 34 H 1.09004 * 110.48113 * 217.59872 * 6 5 3 35 35 H 1.08997 * 110.48560 * 94.96002 * 6 5 3 36 36 H 1.09001 * 110.75796 * 279.63007 * 7 6 5 37 37 H 1.08996 * 110.91412 * 156.33309 * 7 6 5 38 38 H 1.00906 * 111.00034 * 32.88568 * 10 8 3 39 39 H 1.08998 * 109.47293 * 309.33848 * 13 11 10 40 40 H 1.09001 * 109.47429 * 69.33616 * 13 11 10 41 41 H 1.09000 * 109.47102 * 189.33693 * 13 11 10 42 42 H 1.08992 * 109.47915 * 95.81457 * 17 16 14 43 43 H 1.09002 * 109.47333 * 215.82102 * 17 16 14 44 44 H 1.09002 * 109.46884 * 335.81690 * 17 16 14 45 45 H 1.09008 * 109.47273 * 210.00299 * 18 16 14 46 46 H 1.09002 * 109.47024 * 329.99827 * 18 16 14 47 47 H 0.97001 * 119.99883 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5915 1.9975 0.8239 5 6 1.7037 2.1246 -1.3401 6 6 3.0485 2.5267 -1.9803 7 6 4.0234 2.6325 -0.7814 8 6 3.5774 1.4594 0.1263 9 1 3.9998 0.5197 -0.2296 10 7 3.9761 1.7062 1.5185 11 6 5.3307 1.1992 1.7760 12 1 5.9439 1.3325 0.8847 13 6 5.2602 -0.2878 2.1288 14 6 5.9417 1.9596 2.9246 15 8 5.2755 2.7623 3.5432 16 7 7.2286 1.7476 3.2644 17 6 8.0623 0.8551 2.4555 18 6 7.7937 2.4098 4.4427 19 6 7.5930 1.5365 5.6544 20 1 7.0939 0.5837 5.5565 21 6 8.0455 1.9544 6.8879 22 7 7.8698 1.1925 7.9454 23 14 8.9079 3.6026 7.0572 24 1 7.9046 4.6593 7.3440 25 1 9.8887 3.5361 8.1702 26 1 9.6162 3.9230 5.7919 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.0930 3.0106 -1.1667 33 1 1.1747 1.4271 -1.9895 34 1 2.9583 3.4887 -2.4847 35 1 3.3835 1.7591 -2.6778 36 1 3.9019 3.5861 -0.2677 37 1 5.0552 2.4990 -1.1060 38 1 3.3111 1.3038 2.1619 39 1 4.5192 -0.4404 2.9135 40 1 4.9754 -0.8580 1.2445 41 1 6.2356 -0.6246 2.4797 42 1 8.6336 1.4431 1.7373 43 1 8.7471 0.3097 3.1050 44 1 7.4266 0.1481 1.9223 45 1 8.8596 2.5781 4.2887 46 1 7.2935 3.3659 4.5970 47 1 8.1885 1.4863 8.8132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331187681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:36 Heat of formation + Delta-G solvation = -44.317188 kcal Electronic energy + Delta-G solvation = -23287.747332 eV Core-core repulsion = 20083.991480 eV Total energy + Delta-G solvation = -3203.755853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.69758 -38.66649 -35.19854 -34.78641 -33.22676 -32.49843 -30.35568 -28.20423 -27.70490 -26.55912 -25.94565 -23.79262 -22.77274 -21.68006 -20.22768 -19.83577 -18.28848 -16.94537 -16.70760 -16.06276 -15.53290 -15.12437 -14.80050 -14.47721 -14.30912 -14.12137 -13.66573 -13.35452 -13.32166 -12.98382 -12.96179 -12.35700 -12.25638 -12.04080 -11.98192 -11.87683 -11.54659 -11.46247 -11.32147 -11.24903 -11.10782 -10.84733 -10.74397 -10.61409 -10.54527 -10.52810 -10.46897 -10.09677 -9.50342 -8.89545 -8.55994 -8.16648 -7.59585 -6.06409 -4.04736 3.32072 3.38047 3.40496 3.46894 3.73603 4.34829 4.39713 4.42784 4.50075 4.72332 4.98914 5.01176 5.05736 5.14623 5.19150 5.23809 5.28646 5.33214 5.45855 5.47860 5.49656 5.55801 5.57435 5.67742 5.74634 5.78202 5.80794 5.86158 5.89178 5.91179 6.00247 6.05202 6.13111 6.14201 6.23907 6.30439 6.32932 6.74099 6.99999 7.15839 7.44307 7.50646 7.65200 8.36192 8.50917 8.95998 9.13003 9.54776 11.06994 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.003682 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.856987 B = 7602.407521 C = 7845.092308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.095 4.095 4 H 0.083 0.917 5 C -0.115 4.115 6 C -0.124 4.124 7 C -0.115 4.115 8 C 0.087 3.913 9 H 0.049 0.951 10 N -0.658 5.658 11 C 0.070 3.930 12 H 0.094 0.906 13 C -0.186 4.186 14 C 0.514 3.486 15 O -0.524 6.524 16 N -0.602 5.602 17 C 0.071 3.929 18 C 0.216 3.784 19 C -0.528 4.528 20 H 0.073 0.927 21 C 0.071 3.929 22 N -0.899 5.899 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.266 1.266 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.348 0.652 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.028 0.972 46 H 0.037 0.963 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.943 -2.871 -21.151 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.114 4.114 4 H 0.101 0.899 5 C -0.153 4.153 6 C -0.162 4.162 7 C -0.153 4.153 8 C -0.023 4.023 9 H 0.067 0.933 10 N -0.290 5.290 11 C -0.044 4.044 12 H 0.111 0.889 13 C -0.244 4.244 14 C 0.300 3.700 15 O -0.399 6.399 16 N -0.335 5.335 17 C -0.073 4.073 18 C 0.095 3.905 19 C -0.566 4.566 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.538 5.538 23 Si 0.704 3.296 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.191 1.191 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.168 0.832 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.046 0.954 46 H 0.055 0.945 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.056 -1.794 -20.717 22.680 hybrid contribution 0.439 -0.320 0.338 0.640 sum -8.617 -2.114 -20.379 22.226 Atomic orbital electron populations 1.21794 0.95789 1.01410 1.01962 1.21643 0.96021 0.96173 1.01794 1.22003 0.94744 0.96013 0.98663 0.89895 1.22186 0.97368 1.00011 0.95756 1.22322 0.95355 1.00995 0.97547 1.22544 0.98139 0.99597 0.95037 1.22468 0.94149 0.96850 0.88865 0.93262 1.60230 1.02071 1.63356 1.03314 1.21478 0.91958 0.92826 0.98089 0.88853 1.22634 1.04363 0.95558 1.01889 1.20190 0.81847 0.83231 0.84774 1.90645 1.60558 1.35034 1.53619 1.47782 1.10449 1.46591 1.28667 1.21920 0.95879 0.93983 0.95490 1.19622 0.93320 0.94272 0.83247 1.21348 1.38506 1.05785 0.90968 0.90850 1.24860 0.95596 0.97036 0.95581 1.69903 1.46923 1.37505 0.99434 0.86834 0.79904 0.84799 0.78068 1.19882 1.21134 1.19066 0.92669 0.92980 0.92597 0.92096 0.92119 0.91833 0.91835 0.91766 0.92005 0.90271 0.92176 0.83204 0.91664 0.92272 0.90084 0.93808 0.90880 0.91133 0.95412 0.94503 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.75 37.15 0.36 -0.82 16 2 C -0.12 -1.01 5.06 -26.74 -0.14 -1.15 16 3 C -0.10 -0.92 2.41 -89.39 -0.22 -1.13 16 4 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 5 C -0.12 -0.98 5.98 -25.50 -0.15 -1.13 16 6 C -0.12 -1.07 6.83 -25.07 -0.17 -1.25 16 7 C -0.11 -1.24 6.49 -24.74 -0.16 -1.41 16 8 C 0.09 0.96 2.48 -66.06 -0.16 0.79 16 9 H 0.05 0.52 7.01 -51.93 -0.36 0.15 16 10 N -0.66 -9.43 5.56 -99.22 -0.55 -9.98 16 11 C 0.07 1.06 2.02 -68.87 -0.14 0.92 16 12 H 0.09 1.24 7.39 -51.93 -0.38 0.86 16 13 C -0.19 -2.44 8.66 37.15 0.32 -2.12 16 14 C 0.51 10.74 7.05 -10.99 -0.08 10.66 16 15 O -0.52 -13.32 16.00 5.56 0.09 -13.23 16 16 N -0.60 -12.63 2.86 -182.96 -0.52 -13.15 16 17 C 0.07 1.11 9.74 59.85 0.58 1.69 16 18 C 0.22 5.42 4.29 -5.19 -0.02 5.40 16 19 C -0.53 -15.33 9.94 -34.44 -0.34 -15.68 16 20 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 21 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 22 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 23 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 24 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 27 H 0.05 0.39 7.01 -51.92 -0.36 0.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.48 6.88 -51.93 -0.36 0.12 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.35 5.05 7.99 -39.29 -0.31 4.73 16 39 H 0.06 0.93 7.95 -51.93 -0.41 0.52 16 40 H 0.06 0.62 7.62 -51.93 -0.40 0.22 16 41 H 0.08 1.11 5.41 -51.93 -0.28 0.83 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 44 H 0.07 0.90 4.11 -51.93 -0.21 0.69 16 45 H 0.03 0.66 7.13 -51.92 -0.37 0.29 16 46 H 0.04 1.00 6.79 -51.93 -0.35 0.64 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -33.73 361.90 -8.30 -42.03 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.46 Total: 1.99 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.41 Total: -3.21 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.30 Total: -50.31 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.73 -8.30 -42.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331187681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.289 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds