Wall clock time and date at job start Tue Mar 31 2020 05:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47565 * 2 1 4 4 H 1.09002 * 110.05315 * 53.58646 * 3 2 1 5 5 C 1.54263 * 110.03207 * 292.17174 * 3 2 1 6 6 C 1.54895 * 104.19419 * 217.10174 * 5 3 2 7 7 C 1.54892 * 102.74584 * 37.93910 * 6 5 3 8 8 C 1.53872 * 110.03370 * 174.99827 * 3 2 1 9 9 H 1.09000 * 110.07362 * 238.59143 * 8 3 2 10 10 N 1.46900 * 110.03452 * 0.02562 * 8 3 2 11 11 C 1.46895 * 111.00038 * 203.61960 * 10 8 3 12 12 H 1.08993 * 109.47281 * 34.99762 * 11 10 8 13 13 C 1.53006 * 109.47098 * 274.99494 * 11 10 8 14 14 C 1.50702 * 109.47239 * 155.00075 * 11 10 8 15 15 O 1.21283 * 120.00030 * 14.60020 * 14 11 10 16 16 N 1.34777 * 120.00177 * 194.60339 * 14 11 10 17 17 C 1.46506 * 119.99754 * 3.74496 * 16 14 11 18 18 C 1.46497 * 120.00200 * 183.75370 * 16 14 11 19 19 C 1.50700 * 109.47255 * 89.99545 * 18 16 14 20 20 H 1.07995 * 119.99913 * 359.97438 * 19 18 16 21 21 C 1.37880 * 119.99603 * 180.02562 * 19 18 16 22 22 N 1.31513 * 120.00496 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99672 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47107 * 89.99998 * 23 21 19 25 25 H 1.48502 * 109.47143 * 209.99962 * 23 21 19 26 26 H 1.48498 * 109.47252 * 329.99817 * 23 21 19 27 27 H 1.08998 * 109.47290 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46968 * 299.99522 * 1 2 3 29 29 H 1.09004 * 109.47264 * 59.99527 * 1 2 3 30 30 H 1.09009 * 109.46928 * 239.99946 * 2 1 3 31 31 H 1.09004 * 109.47264 * 120.00473 * 2 1 3 32 32 H 1.09004 * 110.48954 * 98.42382 * 5 3 2 33 33 H 1.08998 * 110.48671 * 335.77610 * 5 3 2 34 34 H 1.09001 * 110.75439 * 279.62831 * 6 5 3 35 35 H 1.08996 * 110.91296 * 156.32632 * 6 5 3 36 36 H 1.09003 * 110.48413 * 203.37787 * 7 6 5 37 37 H 1.08998 * 110.48312 * 80.74178 * 7 6 5 38 38 H 1.00905 * 111.00088 * 79.66256 * 10 8 3 39 39 H 1.09005 * 109.46762 * 68.20995 * 13 11 10 40 40 H 1.08997 * 109.46969 * 308.21592 * 13 11 10 41 41 H 1.09000 * 109.47229 * 188.20760 * 13 11 10 42 42 H 1.09000 * 109.46772 * 84.25571 * 17 16 14 43 43 H 1.08998 * 109.46937 * 204.25396 * 17 16 14 44 44 H 1.09000 * 109.46917 * 324.25513 * 17 16 14 45 45 H 1.09002 * 109.46989 * 209.99798 * 18 16 14 46 46 H 1.08999 * 109.46794 * 329.99640 * 18 16 14 47 47 H 0.96996 * 120.00062 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5916 1.9975 0.8240 5 6 1.7006 2.1230 -1.3421 6 6 2.9290 3.0201 -1.6345 7 6 4.1124 2.1495 -1.1440 8 6 3.5735 1.4593 0.1260 9 1 3.8700 2.0220 1.0112 10 7 4.0868 0.0853 0.2079 11 6 5.3984 0.0518 0.8686 12 1 5.4314 0.8117 1.6493 13 6 6.4954 0.3303 -0.1610 14 6 5.6178 -1.3075 1.4810 15 8 4.9072 -2.2376 1.1633 16 7 6.6037 -1.4897 2.3818 17 6 7.4089 -0.3496 2.8271 18 6 6.8702 -2.8277 2.9155 19 6 7.8822 -3.5243 2.0428 20 1 8.2861 -3.0208 1.1769 21 6 8.2916 -4.8047 2.3492 22 7 7.7987 -5.4184 3.4028 23 14 9.5466 -5.6679 1.2678 24 1 10.9143 -5.3773 1.7681 25 1 9.3071 -7.1330 1.3043 26 1 9.4161 -5.1796 -0.1285 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 0.7998 2.7292 -1.2455 33 1 1.5772 1.3773 -2.1275 34 1 2.8722 3.9495 -1.0678 35 1 3.0162 3.2246 -2.7015 36 1 4.9719 2.7750 -0.9027 37 1 4.3786 1.4081 -1.8974 38 1 4.1316 -0.3391 -0.7065 39 1 6.4240 1.3648 -0.4972 40 1 6.3720 -0.3380 -1.0132 41 1 7.4717 0.1627 0.2939 42 1 6.8917 0.1665 3.6359 43 1 8.3762 -0.7047 3.1825 44 1 7.5577 0.3374 1.9941 45 1 7.2616 -2.7431 3.9293 46 1 5.9451 -3.4039 2.9301 47 1 8.0870 -6.3190 3.6185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331187682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:39 Heat of formation + Delta-G solvation = -47.422171 kcal Electronic energy + Delta-G solvation = -23461.337132 eV Core-core repulsion = 20257.446638 eV Total energy + Delta-G solvation = -3203.890495 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.75069 -38.55988 -35.02523 -34.61999 -32.97127 -32.54480 -30.15015 -27.74622 -27.55919 -26.48801 -25.78977 -23.82114 -22.60586 -21.81373 -20.87530 -19.14437 -18.40077 -16.61235 -16.42937 -16.07143 -15.25979 -15.15822 -14.54734 -14.38161 -14.32605 -13.80663 -13.77452 -13.37522 -13.09373 -12.84426 -12.78432 -12.34509 -12.06920 -11.96680 -11.88378 -11.81230 -11.34082 -11.27949 -11.15861 -11.10146 -11.00456 -10.88947 -10.82543 -10.61579 -10.51880 -10.34756 -10.22561 -10.12060 -9.57850 -8.80045 -8.40557 -8.07134 -7.52942 -6.00898 -4.05759 3.31063 3.37781 3.41419 3.56847 3.83928 4.39485 4.46623 4.48934 4.59078 4.82051 5.06937 5.15077 5.19574 5.28650 5.31705 5.33600 5.39785 5.41852 5.48110 5.53030 5.54632 5.65188 5.71658 5.74982 5.79208 5.84605 5.85549 5.96055 5.97329 6.01067 6.14057 6.15690 6.19502 6.26446 6.32840 6.50260 6.74338 7.03401 7.25181 7.51447 7.54650 7.63686 7.96693 8.28183 8.54070 8.95311 9.24752 9.59593 11.06988 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024222 B = 0.003867 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.716005 B = 7239.801697 C = 7607.868636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.082 4.082 4 H 0.069 0.931 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.154 4.154 8 C 0.088 3.912 9 H 0.077 0.923 10 N -0.655 5.655 11 C 0.068 3.932 12 H 0.091 0.909 13 C -0.180 4.180 14 C 0.513 3.487 15 O -0.527 6.527 16 N -0.606 5.606 17 C 0.079 3.921 18 C 0.246 3.754 19 C -0.525 4.525 20 H 0.056 0.944 21 C 0.061 3.939 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.349 0.651 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.030 0.970 46 H 0.044 0.956 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.215 18.656 -7.264 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.101 4.101 4 H 0.087 0.913 5 C -0.158 4.158 6 C -0.162 4.162 7 C -0.193 4.193 8 C -0.023 4.023 9 H 0.095 0.905 10 N -0.285 5.285 11 C -0.046 4.046 12 H 0.109 0.891 13 C -0.239 4.239 14 C 0.298 3.702 15 O -0.402 6.402 16 N -0.340 5.340 17 C -0.065 4.065 18 C 0.127 3.873 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.170 0.830 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.048 0.952 46 H 0.062 0.938 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.935 17.784 -6.726 21.008 hybrid contribution 1.499 -0.073 -1.197 1.920 sum -7.436 17.711 -7.923 20.778 Atomic orbital electron populations 1.21853 0.97269 1.01178 1.00822 1.21341 0.93542 0.95253 1.03765 1.21810 0.94106 0.97192 0.96972 0.91266 1.22479 0.97387 0.98387 0.97526 1.22434 0.95139 0.98095 1.00508 1.23245 0.98053 0.99547 0.98458 1.22326 0.94777 0.88389 0.96796 0.90459 1.60337 1.24351 1.16775 1.27055 1.21570 0.89086 0.96839 0.97115 0.89091 1.22571 0.99970 1.01634 0.99700 1.20158 0.80608 0.89496 0.79921 1.90644 1.45784 1.43138 1.60642 1.48111 1.32650 1.10461 1.42734 1.21733 0.96595 0.89400 0.98774 1.19254 0.97402 0.76959 0.93707 1.21448 1.23814 0.99721 1.11422 0.92583 1.24937 0.96748 0.97073 0.95373 1.69934 1.43438 1.13624 1.26361 0.86516 0.81260 0.78847 0.80893 1.20693 1.21087 1.19964 0.93080 0.93361 0.93495 0.92312 0.89971 0.92053 0.91560 0.91725 0.91963 0.91792 0.91399 0.83021 0.92015 0.91924 0.90969 0.94051 0.90766 0.92389 0.95220 0.93805 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.77 37.15 0.36 -1.25 16 2 C -0.10 -1.22 4.29 -26.73 -0.11 -1.33 16 3 C -0.08 -0.84 2.93 -89.51 -0.26 -1.10 16 4 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.12 -1.05 5.53 -25.07 -0.14 -1.19 16 6 C -0.12 -1.01 6.91 -24.73 -0.17 -1.18 16 7 C -0.15 -1.40 5.00 -25.07 -0.13 -1.53 16 8 C 0.09 0.94 3.20 -66.60 -0.21 0.73 16 9 H 0.08 0.83 7.46 -51.93 -0.39 0.44 16 10 N -0.65 -9.06 3.68 -99.79 -0.37 -9.43 16 11 C 0.07 1.01 2.16 -68.86 -0.15 0.86 16 12 H 0.09 1.21 6.75 -51.93 -0.35 0.86 16 13 C -0.18 -2.33 8.43 37.16 0.31 -2.02 16 14 C 0.51 10.79 6.96 -10.98 -0.08 10.72 16 15 O -0.53 -13.51 16.06 5.56 0.09 -13.42 16 16 N -0.61 -13.03 2.86 -182.95 -0.52 -13.56 16 17 C 0.08 1.27 9.75 59.85 0.58 1.85 16 18 C 0.25 6.57 5.16 -5.20 -0.03 6.54 16 19 C -0.53 -15.03 9.39 -34.44 -0.32 -15.36 16 20 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 23 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.44 7.51 -51.93 -0.39 0.05 16 30 H 0.06 0.75 7.60 -51.92 -0.39 0.35 16 31 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.61 7.76 -51.93 -0.40 0.20 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.55 7.36 -51.93 -0.38 0.17 16 37 H 0.07 0.66 7.58 -51.93 -0.39 0.26 16 38 H 0.35 4.95 7.41 -39.29 -0.29 4.66 16 39 H 0.06 0.63 6.27 -51.93 -0.33 0.31 16 40 H 0.06 0.87 7.97 -51.93 -0.41 0.46 16 41 H 0.07 0.98 6.06 -51.93 -0.31 0.67 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 44 H 0.06 0.77 4.79 -51.93 -0.25 0.52 16 45 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 46 H 0.04 1.33 7.37 -51.93 -0.38 0.94 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -32.39 360.38 -8.50 -40.89 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.41 Total: 1.87 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -0.44 Total: -2.60 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.15 Total: -49.17 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.09 Total: -13.42 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.39 -8.50 -40.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331187682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.532 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds