Wall clock time and date at job start Tue Mar 31 2020 05:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47565 * 2 1 4 4 H 1.09002 * 110.05315 * 53.58646 * 3 2 1 5 5 C 1.54263 * 110.03207 * 292.17174 * 3 2 1 6 6 C 1.54895 * 104.19419 * 217.10174 * 5 3 2 7 7 C 1.54892 * 102.74584 * 37.93910 * 6 5 3 8 8 C 1.53872 * 110.03370 * 174.99827 * 3 2 1 9 9 H 1.09000 * 110.07362 * 238.59143 * 8 3 2 10 10 N 1.46900 * 110.03452 * 0.02562 * 8 3 2 11 11 C 1.46895 * 111.00038 * 203.61960 * 10 8 3 12 12 H 1.08993 * 109.47281 * 34.99762 * 11 10 8 13 13 C 1.53006 * 109.47098 * 274.99494 * 11 10 8 14 14 C 1.50702 * 109.47239 * 155.00075 * 11 10 8 15 15 O 1.21283 * 120.00030 * 14.60020 * 14 11 10 16 16 N 1.34777 * 120.00177 * 194.60339 * 14 11 10 17 17 C 1.46506 * 119.99754 * 3.74496 * 16 14 11 18 18 C 1.46497 * 120.00200 * 183.75370 * 16 14 11 19 19 C 1.50700 * 109.47255 * 89.99545 * 18 16 14 20 20 H 1.07995 * 119.99913 * 359.97438 * 19 18 16 21 21 C 1.37880 * 119.99603 * 180.02562 * 19 18 16 22 22 N 1.31513 * 120.00496 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99672 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47107 * 89.99998 * 23 21 19 25 25 H 1.48502 * 109.47143 * 209.99962 * 23 21 19 26 26 H 1.48498 * 109.47252 * 329.99817 * 23 21 19 27 27 H 1.08998 * 109.47290 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46968 * 299.99522 * 1 2 3 29 29 H 1.09004 * 109.47264 * 59.99527 * 1 2 3 30 30 H 1.09009 * 109.46928 * 239.99946 * 2 1 3 31 31 H 1.09004 * 109.47264 * 120.00473 * 2 1 3 32 32 H 1.09004 * 110.48954 * 98.42382 * 5 3 2 33 33 H 1.08998 * 110.48671 * 335.77610 * 5 3 2 34 34 H 1.09001 * 110.75439 * 279.62831 * 6 5 3 35 35 H 1.08996 * 110.91296 * 156.32632 * 6 5 3 36 36 H 1.09003 * 110.48413 * 203.37787 * 7 6 5 37 37 H 1.08998 * 110.48312 * 80.74178 * 7 6 5 38 38 H 1.00905 * 111.00088 * 79.66256 * 10 8 3 39 39 H 1.09005 * 109.46762 * 68.20995 * 13 11 10 40 40 H 1.08997 * 109.46969 * 308.21592 * 13 11 10 41 41 H 1.09000 * 109.47229 * 188.20760 * 13 11 10 42 42 H 1.09000 * 109.46772 * 84.25571 * 17 16 14 43 43 H 1.08998 * 109.46937 * 204.25396 * 17 16 14 44 44 H 1.09000 * 109.46917 * 324.25513 * 17 16 14 45 45 H 1.09002 * 109.46989 * 209.99798 * 18 16 14 46 46 H 1.08999 * 109.46794 * 329.99640 * 18 16 14 47 47 H 0.96996 * 120.00062 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5916 1.9975 0.8240 5 6 1.7006 2.1230 -1.3421 6 6 2.9290 3.0201 -1.6345 7 6 4.1124 2.1495 -1.1440 8 6 3.5735 1.4593 0.1260 9 1 3.8700 2.0220 1.0112 10 7 4.0868 0.0853 0.2079 11 6 5.3984 0.0518 0.8686 12 1 5.4314 0.8117 1.6493 13 6 6.4954 0.3303 -0.1610 14 6 5.6178 -1.3075 1.4810 15 8 4.9072 -2.2376 1.1633 16 7 6.6037 -1.4897 2.3818 17 6 7.4089 -0.3496 2.8271 18 6 6.8702 -2.8277 2.9155 19 6 7.8822 -3.5243 2.0428 20 1 8.2861 -3.0208 1.1769 21 6 8.2916 -4.8047 2.3492 22 7 7.7987 -5.4184 3.4028 23 14 9.5466 -5.6679 1.2678 24 1 10.9143 -5.3773 1.7681 25 1 9.3071 -7.1330 1.3043 26 1 9.4161 -5.1796 -0.1285 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 0.7998 2.7292 -1.2455 33 1 1.5772 1.3773 -2.1275 34 1 2.8722 3.9495 -1.0678 35 1 3.0162 3.2246 -2.7015 36 1 4.9719 2.7750 -0.9027 37 1 4.3786 1.4081 -1.8974 38 1 4.1316 -0.3391 -0.7065 39 1 6.4240 1.3648 -0.4972 40 1 6.3720 -0.3380 -1.0132 41 1 7.4717 0.1627 0.2939 42 1 6.8917 0.1665 3.6359 43 1 8.3762 -0.7047 3.1825 44 1 7.5577 0.3374 1.9941 45 1 7.2616 -2.7431 3.9293 46 1 5.9451 -3.4039 2.9301 47 1 8.0870 -6.3190 3.6185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331187682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:38 Heat of formation + Delta-G solvation = -67.719114 kcal Electronic energy + Delta-G solvation = -23462.217274 eV Core-core repulsion = 20257.446638 eV Total energy + Delta-G solvation = -3204.770636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00527 -39.79638 -36.55262 -36.09020 -34.66074 -33.80319 -31.31975 -29.55281 -28.39996 -27.53517 -27.18339 -25.60969 -23.50876 -23.38738 -21.59287 -20.10726 -19.88685 -18.65771 -17.89400 -17.39417 -16.70884 -16.30464 -16.08092 -15.97139 -15.25745 -14.98901 -14.86762 -14.57145 -14.23588 -14.08859 -13.94806 -13.71428 -13.53997 -13.35325 -13.21982 -13.01830 -12.84529 -12.76778 -12.49110 -12.40523 -12.26625 -12.16118 -12.00505 -11.76055 -11.68711 -11.60830 -11.44369 -11.19160 -11.12396 -10.64157 -10.39805 -9.34521 -9.16441 -8.21543 -6.37153 1.35688 1.39097 1.49254 1.94792 2.30300 2.44400 3.07282 3.30991 3.71706 3.73014 3.85329 4.00606 4.11427 4.14931 4.36465 4.41001 4.45819 4.55817 4.60154 4.65485 4.68590 4.74502 4.75213 4.76333 4.86672 4.92818 4.98543 5.01873 5.04101 5.08909 5.20914 5.23574 5.24659 5.26273 5.34023 5.39850 5.48122 5.57858 5.61408 5.72499 5.87560 6.07421 6.18791 6.46461 6.71965 6.88523 7.29865 7.60380 8.85355 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024222 B = 0.003867 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.716005 B = 7239.801697 C = 7607.868636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.080 4.080 4 H 0.074 0.926 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.149 4.149 8 C 0.087 3.913 9 H 0.085 0.915 10 N -0.671 5.671 11 C 0.085 3.915 12 H 0.117 0.883 13 C -0.171 4.171 14 C 0.500 3.500 15 O -0.587 6.587 16 N -0.614 5.614 17 C 0.074 3.926 18 C 0.260 3.740 19 C -0.541 4.541 20 H 0.054 0.946 21 C 0.006 3.994 22 N -0.930 5.930 23 Si 0.969 3.031 24 H -0.262 1.262 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.344 0.656 39 H 0.098 0.902 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.020 0.980 46 H -0.007 1.007 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.320 21.571 -8.647 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.099 4.099 4 H 0.093 0.907 5 C -0.154 4.154 6 C -0.156 4.156 7 C -0.188 4.188 8 C -0.023 4.023 9 H 0.103 0.897 10 N -0.302 5.302 11 C -0.029 4.029 12 H 0.135 0.865 13 C -0.230 4.230 14 C 0.288 3.712 15 O -0.466 6.466 16 N -0.346 5.346 17 C -0.068 4.068 18 C 0.139 3.861 19 C -0.580 4.580 20 H 0.072 0.928 21 C -0.193 4.193 22 N -0.570 5.570 23 Si 0.793 3.207 24 H -0.187 1.187 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.164 0.836 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.112 0.888 45 H 0.038 0.962 46 H 0.011 0.989 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.024 20.765 -8.099 23.688 hybrid contribution 1.143 -0.988 -0.712 1.670 sum -6.881 19.776 -8.811 22.718 Atomic orbital electron populations 1.21815 0.96030 1.01007 1.01875 1.21223 0.94641 0.96286 1.01283 1.21808 0.93927 0.95858 0.98338 0.90730 1.22437 0.98448 0.98390 0.96084 1.22419 0.93875 0.98033 1.01256 1.23179 0.98954 0.99511 0.97168 1.22424 0.94927 0.86720 0.98192 0.89708 1.60250 1.23966 1.19097 1.26887 1.21431 0.90513 0.92841 0.98096 0.86533 1.22525 0.98628 1.03501 0.98353 1.21426 0.79218 0.91557 0.78975 1.90606 1.47840 1.45753 1.62427 1.48148 1.33682 1.09951 1.42817 1.22028 0.95743 0.88026 1.01004 1.18706 0.94479 0.79554 0.93410 1.21708 1.24222 1.00452 1.11570 0.92752 1.25896 0.98842 0.97822 0.96745 1.70064 1.44791 1.14103 1.28016 0.85391 0.79098 0.77399 0.78764 1.18693 1.20714 1.19697 0.93946 0.92745 0.91885 0.93616 0.93624 0.90852 0.92207 0.90566 0.91075 0.90385 0.92059 0.83576 0.88323 0.93347 0.91334 0.91429 0.91415 0.88847 0.96224 0.98853 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.77 71.98 0.70 -2.39 16 2 C -0.10 -2.36 4.29 30.59 0.13 -2.22 16 3 C -0.08 -1.53 2.93 -10.07 -0.03 -1.56 16 4 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 5 C -0.12 -1.74 5.53 31.67 0.18 -1.56 16 6 C -0.12 -1.50 6.91 31.89 0.22 -1.28 16 7 C -0.15 -2.24 5.00 31.67 0.16 -2.08 16 8 C 0.09 1.69 3.20 45.64 0.15 1.84 16 9 H 0.08 1.54 7.46 -2.39 -0.02 1.52 16 10 N -0.67 -18.31 3.68 -469.62 -1.73 -20.04 16 11 C 0.08 2.41 2.16 44.17 0.10 2.51 16 12 H 0.12 2.74 6.75 -2.39 -0.02 2.72 16 13 C -0.17 -4.02 8.43 71.98 0.61 -3.41 16 14 C 0.50 21.54 6.96 87.66 0.61 22.15 16 15 O -0.59 -31.88 16.06 -3.04 -0.05 -31.93 16 16 N -0.61 -26.85 2.86 -851.12 -2.43 -29.29 16 17 C 0.07 2.26 9.75 127.77 1.25 3.50 16 18 C 0.26 14.57 5.16 85.63 0.44 15.01 16 19 C -0.54 -31.82 9.39 25.60 0.24 -31.58 16 20 H 0.05 3.14 7.81 -2.91 -0.02 3.11 16 21 C 0.01 0.33 5.46 84.66 0.46 0.80 16 22 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 23 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.09 7.51 -2.38 -0.02 1.07 16 30 H 0.05 1.21 7.60 -2.38 -0.02 1.19 16 31 H 0.04 1.44 7.58 -2.38 -0.02 1.42 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.06 0.99 7.76 -2.39 -0.02 0.97 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.98 7.36 -2.39 -0.02 0.96 16 37 H 0.06 1.03 7.58 -2.39 -0.02 1.01 16 38 H 0.34 9.87 7.41 -89.69 -0.66 9.20 16 39 H 0.10 1.61 6.27 -2.38 -0.01 1.60 16 40 H 0.05 1.28 7.97 -2.39 -0.02 1.27 16 41 H 0.07 1.67 6.06 -2.39 -0.01 1.65 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 2.16 8.03 -2.39 -0.02 2.14 16 44 H 0.09 2.18 4.79 -2.39 -0.01 2.17 16 45 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 46 H -0.01 -0.44 7.37 -2.39 -0.02 -0.45 16 47 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -74.92 360.38 3.58 -71.34 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.27 Total: 19.92 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 5.21 Total: -0.30 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -3.88 Total: -106.58 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.05 Total: -31.93 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.92 3.58 -71.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331187682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.624 kcal (2) G-P(sol) polarization free energy of solvation -74.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds