Wall clock time and date at job start Tue Mar 31 2020 05:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47190 * 2 1 4 4 H 1.08994 * 110.01733 * 53.60145 * 3 2 1 5 5 C 1.54756 * 110.05223 * 292.24264 * 3 2 1 6 6 C 1.54890 * 103.96440 * 217.10154 * 5 3 2 7 7 C 1.54887 * 102.91108 * 37.92718 * 6 5 3 8 8 C 1.53877 * 110.03297 * 174.99690 * 3 2 1 9 9 H 1.08994 * 110.06972 * 238.63756 * 8 3 2 10 10 N 1.46904 * 110.03186 * 0.04955 * 8 3 2 11 11 C 1.46898 * 110.99761 * 203.61981 * 10 8 3 12 12 H 1.09003 * 109.46980 * 324.99831 * 11 10 8 13 13 C 1.52998 * 109.47169 * 84.99656 * 11 10 8 14 14 C 1.50701 * 109.46992 * 204.99824 * 11 10 8 15 15 O 1.21280 * 120.00077 * 0.02562 * 14 11 10 16 16 N 1.34779 * 119.99584 * 179.97438 * 14 11 10 17 17 C 1.46496 * 120.00189 * 0.02562 * 16 14 11 18 18 C 1.46496 * 119.99364 * 179.97438 * 16 14 11 19 19 C 1.50707 * 109.47294 * 90.00337 * 18 16 14 20 20 H 1.07997 * 119.99361 * 0.02562 * 19 18 16 21 21 C 1.37878 * 120.00017 * 179.97438 * 19 18 16 22 22 N 1.31511 * 120.00013 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99699 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46908 * 60.00193 * 23 21 19 25 25 H 1.48493 * 109.46830 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47017 * 300.00335 * 23 21 19 27 27 H 1.08997 * 109.47150 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47193 * 300.00406 * 1 2 3 29 29 H 1.09000 * 109.46870 * 60.00527 * 1 2 3 30 30 H 1.08997 * 109.47701 * 239.99582 * 2 1 3 31 31 H 1.09000 * 109.46870 * 119.99473 * 2 1 3 32 32 H 1.09005 * 110.69163 * 98.45504 * 5 3 2 33 33 H 1.08999 * 110.50647 * 335.66121 * 5 3 2 34 34 H 1.09002 * 110.75897 * 279.51836 * 6 5 3 35 35 H 1.09006 * 110.75292 * 156.33066 * 6 5 3 36 36 H 1.08998 * 110.49004 * 80.64153 * 7 6 5 37 37 H 1.09001 * 110.48617 * 203.28662 * 7 6 5 38 38 H 1.00900 * 111.00059 * 79.66557 * 10 8 3 39 39 H 1.09003 * 109.47027 * 60.00203 * 13 11 10 40 40 H 1.09002 * 109.47108 * 180.02562 * 13 11 10 41 41 H 1.08994 * 109.47253 * 300.00118 * 13 11 10 42 42 H 1.08999 * 109.47340 * 89.99775 * 17 16 14 43 43 H 1.09007 * 109.46539 * 209.99670 * 17 16 14 44 44 H 1.08997 * 109.46998 * 329.99370 * 17 16 14 45 45 H 1.08999 * 109.47326 * 210.00364 * 18 16 14 46 46 H 1.08996 * 109.47774 * 330.00219 * 18 16 14 47 47 H 0.97003 * 119.99984 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9968 0.8243 5 6 1.6981 2.1262 -1.3456 6 6 2.9289 3.0215 -1.6333 7 6 4.1124 2.1507 -1.1435 8 6 3.5735 1.4594 0.1261 9 1 3.8698 2.0215 1.0117 10 7 4.0869 0.0854 0.2073 11 6 5.3985 0.0518 0.8681 12 1 5.9610 0.9475 0.6048 13 6 5.2042 -0.0009 2.3848 14 6 6.1575 -1.1692 0.4161 15 8 5.6555 -1.9355 -0.3786 16 7 7.3946 -1.4088 0.8943 17 6 8.0012 -0.4828 1.8538 18 6 8.1321 -2.5960 0.4553 19 6 8.9442 -2.2588 -0.7686 20 1 8.9142 -1.2600 -1.1782 21 6 9.7263 -3.2253 -1.3648 22 7 9.7631 -4.4415 -0.8657 23 14 10.7323 -2.8075 -2.8824 24 1 11.6907 -1.7208 -2.5571 25 1 11.4800 -4.0108 -3.3272 26 1 9.8254 -2.3588 -3.9693 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.7981 2.7339 -1.2511 33 1 1.5758 1.3815 -2.1320 34 1 2.8720 3.9505 -1.0659 35 1 3.0161 3.2269 -2.7003 36 1 4.3786 1.4098 -1.8974 37 1 4.9717 2.7761 -0.9017 38 1 4.1318 -0.3385 -0.7072 39 1 4.6416 -0.8966 2.6482 40 1 6.1774 -0.0254 2.8751 41 1 4.6553 0.8821 2.7117 42 1 7.7473 -0.7921 2.8677 43 1 9.0843 -0.4912 1.7318 44 1 7.6233 0.5240 1.6757 45 1 8.7974 -2.9261 1.2531 46 1 7.4284 -3.3932 0.2161 47 1 10.3130 -5.1215 -1.2854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331187683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:42 Heat of formation + Delta-G solvation = -47.206790 kcal Electronic energy + Delta-G solvation = -23476.102504 eV Core-core repulsion = 20272.221348 eV Total energy + Delta-G solvation = -3203.881155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.77769 -38.61711 -34.96398 -34.70908 -33.00653 -32.60671 -30.24940 -27.62556 -27.57303 -26.59917 -25.90478 -23.75598 -22.60375 -21.73266 -20.75923 -18.99220 -18.53239 -16.62387 -16.52876 -16.12438 -15.34952 -15.09259 -14.92064 -14.51532 -14.36655 -13.79911 -13.43602 -13.37464 -13.13686 -12.91292 -12.54220 -12.33331 -12.15680 -12.07007 -11.85538 -11.63173 -11.44516 -11.25455 -11.16925 -11.08089 -10.98625 -10.91665 -10.78059 -10.58463 -10.55535 -10.33203 -10.23304 -10.16621 -9.64852 -8.82189 -8.43971 -8.19840 -7.64077 -6.04707 -4.09765 3.30717 3.35393 3.36789 3.44079 3.83849 4.34804 4.44646 4.53360 4.60276 4.83388 5.04708 5.16303 5.28583 5.29831 5.33561 5.34940 5.39793 5.46498 5.51557 5.55454 5.58327 5.63183 5.78014 5.80710 5.81072 5.87123 5.92122 5.94829 5.99994 6.03734 6.14943 6.18968 6.22237 6.25363 6.41568 6.47969 6.65565 6.99885 7.23483 7.44694 7.53017 7.61859 7.91459 8.22853 8.42114 8.88947 9.08441 9.55279 11.03294 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020341 B = 0.004051 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.213900 B = 6910.148819 C = 7251.357731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.080 4.080 4 H 0.068 0.932 5 C -0.121 4.121 6 C -0.122 4.122 7 C -0.157 4.157 8 C 0.086 3.914 9 H 0.077 0.923 10 N -0.662 5.662 11 C 0.065 3.935 12 H 0.061 0.939 13 C -0.144 4.144 14 C 0.504 3.496 15 O -0.536 6.536 16 N -0.599 5.599 17 C 0.082 3.918 18 C 0.246 3.754 19 C -0.527 4.527 20 H 0.055 0.945 21 C 0.062 3.938 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.357 0.643 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.032 0.968 46 H 0.044 0.956 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.323 14.826 4.979 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.099 4.099 4 H 0.087 0.913 5 C -0.158 4.158 6 C -0.160 4.160 7 C -0.196 4.196 8 C -0.024 4.024 9 H 0.096 0.904 10 N -0.296 5.296 11 C -0.048 4.048 12 H 0.079 0.921 13 C -0.202 4.202 14 C 0.290 3.710 15 O -0.413 6.413 16 N -0.332 5.332 17 C -0.062 4.062 18 C 0.127 3.873 19 C -0.566 4.566 20 H 0.073 0.927 21 C -0.140 4.140 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.202 1.202 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.181 0.819 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.810 14.026 5.106 20.335 hybrid contribution 1.342 0.667 -1.542 2.150 sum -12.468 14.693 3.564 19.597 Atomic orbital electron populations 1.21857 0.97250 1.01102 1.00932 1.21341 0.93515 0.95482 1.03570 1.21867 0.94044 0.96992 0.96972 0.91324 1.22570 0.97344 0.98435 0.97501 1.22405 0.94984 0.97976 1.00625 1.23173 0.98134 0.99756 0.98573 1.22292 0.94705 0.88687 0.96738 0.90448 1.60631 1.23770 1.16961 1.28274 1.21444 0.90371 0.96514 0.96490 0.92105 1.21969 1.02542 1.02616 0.93093 1.20310 0.81895 0.87098 0.81697 1.90652 1.67999 1.48360 1.34257 1.48083 1.15302 1.26601 1.43179 1.21794 0.99795 0.92636 0.91980 1.19281 0.91174 0.82074 0.94803 1.21383 1.26154 0.97075 1.12015 0.92653 1.24929 0.96857 0.94815 0.97431 1.69921 1.40205 1.02415 1.40763 0.86566 0.80006 0.77693 0.83196 1.20272 1.21118 1.20226 0.93154 0.93392 0.93354 0.92092 0.90378 0.92014 0.91482 0.91752 0.91902 0.91230 0.91915 0.81933 0.91702 0.91080 0.92489 0.93310 0.90916 0.92403 0.95014 0.93814 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.77 37.16 0.36 -1.14 16 2 C -0.10 -1.16 4.30 -26.73 -0.11 -1.27 16 3 C -0.08 -0.82 2.93 -89.24 -0.26 -1.08 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.12 -1.14 5.57 -24.81 -0.14 -1.28 16 6 C -0.12 -1.15 6.89 -24.74 -0.17 -1.32 16 7 C -0.16 -1.77 6.30 -25.07 -0.16 -1.92 16 8 C 0.09 0.99 3.00 -66.59 -0.20 0.79 16 9 H 0.08 0.84 7.16 -51.93 -0.37 0.47 16 10 N -0.66 -9.50 4.05 -99.78 -0.40 -9.90 16 11 C 0.07 0.99 2.06 -68.87 -0.14 0.85 16 12 H 0.06 0.87 6.98 -51.93 -0.36 0.51 16 13 C -0.14 -1.84 9.03 37.16 0.34 -1.51 16 14 C 0.50 10.49 7.10 -10.98 -0.08 10.41 16 15 O -0.54 -13.44 15.23 5.56 0.08 -13.35 16 16 N -0.60 -12.71 2.86 -182.96 -0.52 -13.24 16 17 C 0.08 1.29 8.80 59.84 0.53 1.82 16 18 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 19 C -0.53 -15.03 9.39 -34.44 -0.32 -15.36 16 20 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 23 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.44 7.51 -51.93 -0.39 0.05 16 30 H 0.06 0.78 7.61 -51.93 -0.39 0.39 16 31 H 0.08 1.01 7.58 -51.93 -0.39 0.62 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.68 7.78 -51.93 -0.40 0.28 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.90 7.58 -51.93 -0.39 0.51 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.36 5.94 6.49 -39.29 -0.25 5.68 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.84 4.53 -51.93 -0.24 0.60 16 41 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 42 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 43 H 0.07 1.18 8.07 -51.92 -0.42 0.76 16 44 H 0.06 0.76 6.01 -51.93 -0.31 0.44 16 45 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 46 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -31.51 360.47 -8.59 -40.10 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.41 Total: 2.90 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.48 Total: -2.89 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.19 Total: -49.10 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.51 -8.59 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331187683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.106 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds