Wall clock time and date at job start Tue Mar 31 2020 05:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47421 * 2 1 4 4 H 1.09004 * 110.05352 * 53.58394 * 3 2 1 5 5 C 1.54224 * 110.14449 * 292.02632 * 3 2 1 6 6 C 1.54264 * 106.63737 * 240.73034 * 5 3 2 7 7 C 1.54892 * 104.19651 * 336.40572 * 6 5 3 8 8 C 1.54266 * 110.03482 * 175.00117 * 3 2 1 9 9 H 1.09002 * 110.48609 * 24.21622 * 8 3 2 10 10 N 1.46900 * 110.48499 * 261.70591 * 8 3 2 11 11 C 1.46900 * 110.99957 * 156.83847 * 10 8 3 12 12 H 1.09005 * 109.47437 * 325.00275 * 11 10 8 13 13 C 1.53002 * 109.47096 * 84.99833 * 11 10 8 14 14 C 1.50694 * 109.47363 * 204.99914 * 11 10 8 15 15 O 1.21285 * 119.99997 * 0.02562 * 14 11 10 16 16 N 1.34778 * 120.00278 * 179.97438 * 14 11 10 17 17 C 1.46507 * 119.99873 * 0.02562 * 16 14 11 18 18 C 1.46497 * 120.00114 * 180.02562 * 16 14 11 19 19 C 1.50695 * 109.47151 * 90.00426 * 18 16 14 20 20 H 1.08003 * 120.00052 * 359.97438 * 19 18 16 21 21 C 1.37884 * 120.00054 * 180.02562 * 19 18 16 22 22 N 1.31510 * 119.99851 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99786 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47221 * 60.00032 * 23 21 19 25 25 H 1.48506 * 109.47056 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47138 * 299.99779 * 23 21 19 27 27 H 1.08997 * 109.47113 * 300.00049 * 1 2 3 28 28 H 1.09002 * 109.47234 * 59.99535 * 1 2 3 29 29 H 1.08998 * 109.47460 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46839 * 239.99954 * 2 1 3 31 31 H 1.09002 * 109.47234 * 120.00465 * 2 1 3 32 32 H 1.09009 * 110.00234 * 121.44260 * 5 3 2 33 33 H 1.08998 * 110.06034 * 0.06042 * 5 3 2 34 34 H 1.08993 * 110.49070 * 217.72395 * 6 5 3 35 35 H 1.09001 * 110.59511 * 95.13763 * 6 5 3 36 36 H 1.09000 * 110.75513 * 279.62815 * 7 6 5 37 37 H 1.09002 * 110.91731 * 156.32611 * 7 6 5 38 38 H 1.00895 * 111.00048 * 32.88513 * 10 8 3 39 39 H 1.08996 * 109.47167 * 179.97438 * 13 11 10 40 40 H 1.08997 * 109.47076 * 300.00361 * 13 11 10 41 41 H 1.08997 * 109.47171 * 60.00174 * 13 11 10 42 42 H 1.09005 * 109.46833 * 89.99540 * 17 16 14 43 43 H 1.08996 * 109.46811 * 209.99444 * 17 16 14 44 44 H 1.09000 * 109.46663 * 329.99559 * 17 16 14 45 45 H 1.09005 * 109.47258 * 209.99925 * 18 16 14 46 46 H 1.09002 * 109.47134 * 330.00048 * 18 16 14 47 47 H 0.96996 * 119.99861 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5915 1.9974 0.8240 5 6 1.7051 2.1242 -1.3422 6 6 3.0503 2.5295 -1.9795 7 6 4.0230 2.6347 -0.7787 8 6 3.5774 1.4593 0.1263 9 1 4.0000 0.5206 -0.2319 10 7 3.9762 1.7029 1.5190 11 6 5.3308 1.1956 1.7751 12 1 5.4941 0.2869 1.1957 13 6 6.3575 2.2533 1.3651 14 6 5.4835 0.8898 3.2428 15 8 4.5551 1.0756 4.0008 16 7 6.6514 0.4087 3.7130 17 6 7.7727 0.1837 2.7973 18 6 6.7997 0.1108 5.1397 19 6 6.3968 -1.3179 5.3990 20 1 6.0632 -1.9416 4.5828 21 6 6.4530 -1.8286 6.6786 22 7 6.8587 -1.0690 7.6725 23 14 5.9528 -3.5995 7.0001 24 1 6.8215 -4.5102 6.2118 25 1 6.1032 -3.9015 8.4463 26 1 4.5368 -3.7947 6.5978 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.0927 3.0090 -1.1684 33 1 1.1779 1.4276 -1.9941 34 1 2.9595 3.4922 -2.4824 35 1 3.3889 1.7651 -2.6789 36 1 3.8992 3.5873 -0.2636 37 1 5.0557 2.5034 -1.1018 38 1 3.3113 1.2989 2.1614 39 1 7.3626 1.8771 1.5555 40 1 6.2470 2.4746 0.3035 41 1 6.1943 3.1620 1.9445 42 1 8.3790 1.0875 2.7364 43 1 8.3839 -0.6396 3.1668 44 1 7.3893 -0.0640 1.8075 45 1 7.8392 0.2544 5.4347 46 1 6.1621 0.7790 5.7185 47 1 6.8979 -1.4282 8.5726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331187684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:45 Heat of formation + Delta-G solvation = -51.016793 kcal Electronic energy + Delta-G solvation = -23316.826052 eV Core-core repulsion = 20112.779682 eV Total energy + Delta-G solvation = -3204.046369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.71452 -38.63302 -35.03676 -34.78657 -33.10901 -32.61357 -30.29928 -27.76720 -27.55283 -26.70672 -25.92919 -23.75878 -22.73007 -21.55211 -20.32496 -19.83390 -18.33949 -16.70105 -16.42821 -16.05786 -15.54972 -15.22286 -14.96386 -14.48034 -14.30487 -13.94861 -13.62776 -13.34758 -13.24530 -13.00264 -12.55361 -12.30406 -12.12798 -12.00193 -11.87282 -11.73560 -11.58419 -11.29674 -11.20580 -11.09102 -10.94624 -10.89469 -10.70993 -10.56160 -10.52511 -10.48796 -10.44834 -10.16316 -9.64609 -8.80620 -8.43824 -8.31053 -7.63960 -6.04506 -4.09550 3.30926 3.35468 3.36935 3.44013 3.82654 4.33415 4.43623 4.46947 4.54668 4.76870 5.03232 5.06368 5.13435 5.22190 5.29428 5.32380 5.36340 5.45556 5.48277 5.51591 5.55139 5.61394 5.64189 5.76155 5.82013 5.84558 5.88816 5.92597 5.95327 5.99038 6.06816 6.12923 6.15945 6.23761 6.29398 6.31835 6.44800 7.00037 7.23905 7.44981 7.52989 7.61021 7.91688 8.23123 8.42118 8.89086 9.08432 9.55445 11.03537 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.004141 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.606948 B = 6759.227512 C = 7756.489293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.095 4.095 4 H 0.082 0.918 5 C -0.115 4.115 6 C -0.126 4.126 7 C -0.113 4.113 8 C 0.085 3.915 9 H 0.048 0.952 10 N -0.665 5.665 11 C 0.068 3.932 12 H 0.061 0.939 13 C -0.149 4.149 14 C 0.504 3.496 15 O -0.536 6.536 16 N -0.599 5.599 17 C 0.082 3.918 18 C 0.246 3.754 19 C -0.528 4.528 20 H 0.055 0.945 21 C 0.062 3.938 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.357 0.643 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.032 0.968 46 H 0.044 0.956 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.019 5.373 -19.945 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.114 4.114 4 H 0.101 0.899 5 C -0.153 4.153 6 C -0.164 4.164 7 C -0.151 4.151 8 C -0.025 4.025 9 H 0.066 0.934 10 N -0.301 5.301 11 C -0.046 4.046 12 H 0.079 0.921 13 C -0.206 4.206 14 C 0.289 3.711 15 O -0.413 6.413 16 N -0.331 5.331 17 C -0.062 4.062 18 C 0.127 3.873 19 C -0.566 4.566 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.533 5.533 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.202 1.202 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.180 0.820 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.050 0.950 46 H 0.062 0.938 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.259 6.091 -19.399 21.002 hybrid contribution -0.305 -2.060 0.278 2.101 sum -5.564 4.031 -19.121 20.318 Atomic orbital electron populations 1.21784 0.95778 1.01456 1.01835 1.21653 0.96062 0.96163 1.01942 1.22032 0.94806 0.96112 0.98467 0.89929 1.22206 0.97300 0.99974 0.95820 1.22341 0.95481 1.00933 0.97623 1.22621 0.98120 0.99360 0.94989 1.22538 0.94141 0.96830 0.88952 0.93393 1.60489 1.02746 1.63096 1.03729 1.21500 0.91503 0.97244 0.94330 0.92139 1.22073 0.97835 0.99023 1.01697 1.20330 0.83208 0.77974 0.89568 1.90652 1.39010 1.53176 1.58456 1.48086 1.11351 1.62490 1.11220 1.21799 0.90249 1.00854 0.93309 1.19285 0.97520 0.96521 0.74015 1.21385 1.44794 0.96751 0.93712 0.92650 1.24932 0.95146 0.98076 0.95887 1.69919 1.47011 1.36174 1.00200 0.86565 0.79197 0.84567 0.77117 1.20268 1.21117 1.20217 0.92584 0.92755 0.92953 0.92129 0.91954 0.91909 0.91831 0.91838 0.92007 0.90440 0.91868 0.82043 0.91153 0.91963 0.91750 0.93285 0.90894 0.92405 0.94989 0.93813 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.75 37.16 0.36 -1.04 16 2 C -0.12 -1.26 5.06 -26.74 -0.14 -1.39 16 3 C -0.10 -1.02 2.42 -89.32 -0.22 -1.23 16 4 H 0.08 0.99 7.96 -51.93 -0.41 0.57 16 5 C -0.12 -1.03 5.97 -25.43 -0.15 -1.18 16 6 C -0.13 -1.09 6.83 -25.07 -0.17 -1.26 16 7 C -0.11 -1.16 5.53 -24.74 -0.14 -1.30 16 8 C 0.09 1.01 2.70 -66.05 -0.18 0.83 16 9 H 0.05 0.58 7.19 -51.93 -0.37 0.21 16 10 N -0.67 -9.98 6.03 -99.22 -0.60 -10.58 16 11 C 0.07 1.06 2.22 -68.87 -0.15 0.91 16 12 H 0.06 0.89 6.71 -51.93 -0.35 0.54 16 13 C -0.15 -1.94 8.86 37.16 0.33 -1.61 16 14 C 0.50 10.64 7.10 -10.99 -0.08 10.57 16 15 O -0.54 -13.63 15.22 5.55 0.08 -13.54 16 16 N -0.60 -12.84 2.86 -182.95 -0.52 -13.36 16 17 C 0.08 1.30 8.80 59.85 0.53 1.83 16 18 C 0.25 6.51 5.16 -5.20 -0.03 6.48 16 19 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 20 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 23 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.45 7.02 -51.93 -0.36 0.08 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.06 0.52 6.90 -51.93 -0.36 0.16 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 38 H 0.36 6.08 7.09 -39.29 -0.28 5.80 16 39 H 0.07 0.85 4.53 -51.93 -0.24 0.61 16 40 H 0.06 0.69 5.59 -51.93 -0.29 0.40 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 43 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 44 H 0.06 0.77 6.01 -51.93 -0.31 0.45 16 45 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 46 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -31.96 358.98 -8.61 -40.57 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.25 Total: 2.71 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.45 Total: -2.13 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.38 Total: -49.96 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.54 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.96 -8.61 -40.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331187684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.448 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds