Wall clock time and date at job start Tue Mar 31 2020 05:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46889 * 2 1 4 4 N 1.46900 * 109.47258 * 239.99997 * 2 1 3 5 5 C 1.46895 * 111.00211 * 59.99879 * 4 2 1 6 6 C 1.50694 * 109.47271 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00087 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00286 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00540 * 179.97438 * 8 6 5 10 10 Si 1.86806 * 119.99920 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47091 * 90.00035 * 10 8 6 12 12 H 1.48496 * 109.47054 * 210.00087 * 10 8 6 13 13 H 1.48501 * 109.47038 * 330.00148 * 10 8 6 14 14 C 1.50696 * 109.47140 * 119.99763 * 2 1 3 15 15 O 1.21284 * 120.00000 * 265.00293 * 14 2 1 16 16 N 1.34772 * 120.00364 * 85.00147 * 14 2 1 17 17 C 1.46494 * 120.00365 * 179.97438 * 16 14 2 18 18 C 1.53002 * 109.47345 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.46817 * 65.00126 * 18 17 16 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99932 * 18 17 16 24 24 H 1.08994 * 109.47140 * 299.99968 * 1 2 3 25 25 H 1.09001 * 109.46857 * 60.00184 * 1 2 3 26 26 H 1.09000 * 109.47018 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46790 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46809 * 299.99861 * 3 2 1 29 29 H 1.09001 * 109.47511 * 59.99774 * 3 2 1 30 30 H 1.00899 * 110.99421 * 296.04319 * 4 2 1 31 31 H 1.09001 * 109.47199 * 300.00158 * 5 4 2 32 32 H 1.09003 * 109.47276 * 59.99514 * 5 4 2 33 33 H 0.96994 * 120.00499 * 179.97438 * 9 8 6 34 34 H 0.97008 * 119.99832 * 0.02562 * 16 14 2 35 35 H 1.09008 * 109.47020 * 60.00160 * 17 16 14 36 36 H 1.08997 * 109.47417 * 300.00155 * 17 16 14 37 37 H 1.09002 * 109.47070 * 305.00306 * 18 17 16 38 38 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 39 39 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 40 40 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 42 42 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 43 43 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 46 46 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 47 47 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.5487 -0.0265 -2.4211 6 6 2.0694 -0.7638 -3.6278 7 1 2.6879 -1.6398 -3.5000 8 6 1.7552 -0.3206 -4.8950 9 7 2.2099 -0.9637 -5.9482 10 14 0.6835 1.1934 -5.1161 11 1 1.5424 2.4034 -5.1752 12 1 -0.0893 1.0728 -6.3784 13 1 -0.2544 1.3076 -3.9704 14 6 2.0323 -0.7103 1.2305 15 8 2.3207 -0.0747 2.2223 16 7 2.1611 -2.0519 1.2288 17 6 2.6500 -2.7424 2.4247 18 6 2.7008 -4.2483 2.1593 19 6 3.7368 -4.5398 1.0718 20 6 3.7881 -6.0457 0.8067 21 6 4.1790 -6.7769 2.0927 22 6 3.1430 -6.4855 3.1802 23 6 3.0914 -4.9800 3.4450 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9565 0.8899 30 1 1.7503 -1.6648 -1.1908 31 1 0.4589 -0.0266 -2.4379 32 1 1.9121 1.0011 -2.4379 33 1 1.9886 -0.6522 -6.8397 34 1 1.9308 -2.5603 0.4353 35 1 1.9777 -2.5434 3.2595 36 1 3.6492 -2.3823 2.6693 37 1 1.7206 -4.5923 1.8289 38 1 3.4586 -4.0186 0.1558 39 1 4.7169 -4.1958 1.4022 40 1 4.5265 -6.2534 0.0323 41 1 2.8080 -6.3901 0.4766 42 1 5.1590 -6.4326 2.4229 43 1 4.2151 -7.8498 1.9039 44 1 3.4212 -7.0067 4.0961 45 1 2.1629 -6.8298 2.8499 46 1 4.0715 -4.6360 3.7753 47 1 2.3533 -4.7723 4.2197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331358895.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:27 Heat of formation + Delta-G solvation = -67.237605 kcal Electronic energy + Delta-G solvation = -23182.160432 eV Core-core repulsion = 19977.410676 eV Total energy + Delta-G solvation = -3204.749756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.06988 -38.74980 -36.51369 -34.77559 -32.80083 -31.33236 -30.83607 -30.44036 -27.12245 -26.86606 -25.90434 -23.17399 -22.67061 -21.31171 -20.93737 -19.95402 -18.87941 -17.65226 -16.31968 -15.97859 -15.54299 -15.30717 -14.55644 -14.49576 -14.31261 -14.08300 -13.92152 -13.80608 -13.59607 -12.92188 -12.82179 -12.44026 -12.32785 -12.25051 -12.20569 -11.86452 -11.75945 -11.53470 -11.28879 -11.27475 -11.15814 -10.97606 -10.72502 -10.61725 -10.54774 -10.31324 -10.19533 -9.94025 -9.36325 -9.31555 -8.90095 -8.64025 -7.66824 -6.11256 -4.09580 2.90299 3.25095 3.32695 3.33406 3.36319 4.36746 4.44558 4.53927 4.57652 4.73375 4.95315 5.02844 5.08921 5.13103 5.21468 5.28388 5.29418 5.31171 5.34982 5.36823 5.46932 5.60545 5.72895 5.73975 5.85473 5.88271 5.92854 5.97798 5.99670 6.02936 6.13866 6.14653 6.21295 6.22412 6.32344 6.34850 6.54948 6.64664 6.72545 6.93368 7.47322 7.66076 7.73379 8.11275 8.44945 8.55663 8.95652 9.50047 11.01800 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.004231 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.720565 B = 6615.826490 C = 7904.461540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.090 3.910 3 C -0.124 4.124 4 N -0.662 5.662 5 C 0.160 3.840 6 C -0.517 4.517 7 H 0.079 0.921 8 C 0.071 3.929 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.537 3.463 15 O -0.549 6.549 16 N -0.725 5.725 17 C 0.124 3.876 18 C -0.098 4.098 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.111 4.111 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.330 0.670 31 H -0.007 1.007 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.402 0.598 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 -8.497 16.956 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.005 4.005 3 C -0.182 4.182 4 N -0.295 5.295 5 C 0.033 3.967 6 C -0.556 4.556 7 H 0.097 0.903 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.702 3.298 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.323 3.677 15 O -0.426 6.426 16 N -0.378 5.378 17 C 0.001 3.999 18 C -0.117 4.117 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.149 4.149 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.149 0.851 31 H 0.010 0.990 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.028 -7.717 17.480 19.108 hybrid contribution -1.577 0.221 -0.750 1.760 sum -1.604 -7.496 16.730 18.402 Atomic orbital electron populations 1.22494 0.95577 1.02361 1.03166 1.21140 0.93424 0.96220 0.89702 1.21663 1.02118 0.92660 1.01711 1.60820 1.62591 1.05242 1.00833 1.20135 0.93390 0.95784 0.87379 1.21009 1.32197 1.13875 0.88481 0.90296 1.24876 0.95687 0.96722 0.95855 1.69887 1.45404 1.40260 0.98165 0.86865 0.81182 0.83936 0.77801 1.20071 1.21213 1.19179 1.20586 0.76217 0.81811 0.89074 1.90639 1.50344 1.66233 1.35371 1.46037 1.67733 1.07352 1.16635 1.21357 0.99826 0.90955 0.87806 1.21410 1.00117 0.93683 0.96504 1.21622 0.99094 0.96117 0.98669 1.21533 1.01778 0.95212 0.97231 1.21554 0.98926 0.99834 0.95489 1.21504 0.99571 0.95833 0.98631 1.21484 1.01847 0.95053 0.96498 0.92193 0.90575 0.92539 0.91698 0.91622 0.92042 0.85145 0.98967 0.95182 0.92591 0.76220 0.91896 0.91622 0.90573 0.91111 0.91726 0.91782 0.91951 0.92066 0.92268 0.92135 0.92016 0.91668 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 8.21 37.16 0.31 -2.39 16 2 C 0.09 1.53 0.91 -132.75 -0.12 1.41 16 3 C -0.12 -2.13 7.77 37.16 0.29 -1.84 16 4 N -0.66 -12.71 5.99 -102.40 -0.61 -13.32 16 5 C 0.16 3.64 3.72 -4.98 -0.02 3.62 16 6 C -0.52 -14.10 9.87 -34.44 -0.34 -14.44 16 7 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -26.88 13.96 55.43 0.77 -26.10 16 10 Si 0.87 20.90 27.47 -169.99 -4.67 16.23 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 14 C 0.54 8.95 6.71 -10.99 -0.07 8.87 16 15 O -0.55 -10.56 16.10 5.55 0.09 -10.47 16 16 N -0.72 -9.81 5.18 -60.30 -0.31 -10.12 16 17 C 0.12 1.45 5.06 -4.04 -0.02 1.43 16 18 C -0.10 -0.91 2.23 -90.62 -0.20 -1.12 16 19 C -0.12 -1.18 5.08 -26.73 -0.14 -1.31 16 20 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 21 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 22 C -0.12 -0.88 5.92 -26.76 -0.16 -1.04 16 23 C -0.11 -0.89 5.20 -26.76 -0.14 -1.03 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 1.23 6.40 -51.93 -0.33 0.90 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.13 6.40 -51.93 -0.33 0.80 16 29 H 0.06 0.98 7.87 -51.93 -0.41 0.58 16 30 H 0.33 5.87 7.02 -39.29 -0.28 5.59 16 31 H -0.01 -0.16 5.36 -51.93 -0.28 -0.44 16 32 H 0.03 0.70 5.73 -51.93 -0.30 0.40 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.40 5.03 5.93 -40.82 -0.24 4.78 16 35 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.80 7.18 -51.93 -0.37 0.43 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -30.71 357.85 -8.84 -39.55 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.47 Total: 7.17 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -1.03 Total: -8.32 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.15 Total: -49.55 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.71 -8.84 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331358895.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.687 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds