Wall clock time and date at job start Tue Mar 31 2020 06:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46929 * 2 1 4 4 N 1.46498 * 109.47226 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00104 * 270.54832 * 4 3 2 6 6 H 1.08002 * 120.00340 * 142.62392 * 5 4 3 7 7 C 1.38953 * 120.00137 * 322.61832 * 5 4 3 8 8 N 1.31413 * 119.99804 * 337.97412 * 7 5 4 9 9 Si 1.86796 * 120.00311 * 157.96489 * 7 5 4 10 10 H 1.48491 * 109.47097 * 90.00353 * 9 7 5 11 11 H 1.48503 * 109.47383 * 210.00394 * 9 7 5 12 12 H 1.48497 * 109.47315 * 330.00224 * 9 7 5 13 13 C 1.34779 * 120.00116 * 90.53896 * 4 3 2 14 14 O 1.21280 * 120.00177 * 180.02562 * 13 4 3 15 15 C 1.50700 * 119.99427 * 0.02562 * 13 4 3 16 16 C 1.53008 * 109.46740 * 179.97438 * 15 13 4 17 17 N 1.46899 * 109.46829 * 179.97438 * 16 15 13 18 18 C 1.46847 * 111.00054 * 287.93462 * 17 16 15 19 19 C 1.53035 * 109.52519 * 174.16558 * 18 17 16 20 20 C 1.53124 * 109.27860 * 59.17782 * 19 18 17 21 21 C 1.53121 * 109.15965 * 302.34699 * 20 19 18 22 22 C 1.46850 * 110.99296 * 163.68835 * 17 16 15 23 23 H 1.08997 * 109.43111 * 65.80100 * 22 17 16 24 24 C 1.53009 * 109.49488 * 305.83495 * 22 17 16 25 25 H 1.09005 * 109.47016 * 60.00373 * 1 2 3 26 26 H 1.08998 * 109.47157 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47410 * 300.00102 * 1 2 3 28 28 H 1.08996 * 109.47802 * 239.99756 * 2 1 3 29 29 H 1.09000 * 109.46871 * 119.99179 * 2 1 3 30 30 H 1.09002 * 109.47158 * 59.99743 * 3 2 1 31 31 H 1.08997 * 109.47304 * 299.99697 * 3 2 1 32 32 H 0.96997 * 120.00387 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47515 * 59.99742 * 15 13 4 34 34 H 1.09005 * 109.46890 * 299.98983 * 15 13 4 35 35 H 1.08997 * 109.47100 * 59.99766 * 16 15 13 36 36 H 1.09000 * 109.47091 * 299.99698 * 16 15 13 37 37 H 1.08997 * 109.46118 * 54.14467 * 18 17 16 38 38 H 1.09006 * 109.45645 * 294.17472 * 18 17 16 39 39 H 1.09003 * 109.49965 * 299.24221 * 19 18 17 40 40 H 1.08997 * 109.54084 * 179.14351 * 19 18 17 41 41 H 1.09000 * 109.52277 * 182.44402 * 20 19 18 42 42 H 1.08993 * 109.52125 * 62.25321 * 20 19 18 43 43 H 1.08994 * 109.50297 * 177.59554 * 21 20 19 44 44 H 1.08995 * 109.50390 * 297.67713 * 21 20 19 45 45 H 1.09000 * 109.46835 * 307.01516 * 24 22 17 46 46 H 1.08995 * 109.46695 * 67.01162 * 24 22 17 47 47 H 1.09001 * 109.46689 * 187.01468 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.4315 1.1881 6 1 5.1037 0.8629 1.2792 7 6 3.7088 2.1518 2.2746 8 7 2.8861 3.1585 2.0831 9 14 4.2311 1.6892 4.0073 10 1 5.4600 2.4394 4.3708 11 1 3.1437 2.0293 4.9597 12 1 4.5050 0.2310 4.0691 13 6 4.1794 1.4535 -1.1663 14 8 5.3922 1.4531 -1.1658 15 6 3.4263 1.4661 -2.4715 16 6 4.4211 1.4774 -3.6341 17 7 3.6870 1.4891 -4.9065 18 6 3.0589 0.1869 -5.1636 19 6 2.1869 0.2785 -6.4179 20 6 3.0562 0.6910 -7.6090 21 6 3.7368 2.0264 -7.2959 22 6 4.5638 1.8850 -6.0160 23 1 5.3308 1.1243 -6.1613 24 6 5.2292 3.2234 -5.6885 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8935 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 2.5504 3.6617 2.8414 33 1 2.7999 2.3567 -2.5211 34 1 2.7995 0.5768 -2.5380 35 1 5.0478 0.5870 -3.5847 36 1 5.0476 2.3669 -3.5675 37 1 2.4404 -0.0927 -4.3108 38 1 3.8327 -0.5661 -5.3135 39 1 1.4046 1.0217 -6.2637 40 1 1.7326 -0.6919 -6.6177 41 1 2.4315 0.7996 -8.4956 42 1 3.8145 -0.0713 -7.7878 43 1 4.3905 2.3044 -8.1226 44 1 2.9789 2.7971 -7.1562 45 1 4.4650 3.9530 -5.4206 46 1 5.9158 3.0927 -4.8523 47 1 5.7804 3.5777 -6.5596 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339265429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:07 Heat of formation + Delta-G solvation = -50.075311 kcal Electronic energy + Delta-G solvation = -23526.976435 eV Core-core repulsion = 20322.970892 eV Total energy + Delta-G solvation = -3204.005544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.40453 -38.35216 -35.28970 -33.95758 -32.75233 -32.47745 -31.16234 -29.68681 -27.01998 -25.89136 -24.99738 -23.89948 -22.00686 -21.11062 -20.83492 -19.58772 -18.54589 -16.81523 -16.29254 -15.50501 -15.22928 -14.86038 -14.50202 -14.39539 -14.30826 -13.97703 -13.72142 -13.65245 -13.09371 -12.92943 -12.37103 -12.26304 -11.94672 -11.84591 -11.80498 -11.64197 -11.41677 -11.31315 -11.16342 -10.97775 -10.92081 -10.82762 -10.62166 -10.57320 -10.32146 -10.27295 -10.12123 -9.97226 -9.84340 -8.89556 -8.32251 -8.09142 -7.37857 -6.27381 -3.91208 3.19737 3.28211 3.33590 3.92755 4.01020 4.23389 4.75635 4.78716 4.86809 4.97484 5.07679 5.15030 5.36364 5.37366 5.50332 5.55163 5.59008 5.63255 5.69621 5.76105 5.78372 5.79321 5.84967 5.88740 5.91829 5.97088 6.09238 6.10344 6.16669 6.20721 6.23358 6.33893 6.38744 6.40925 6.52545 6.57273 6.57513 6.65930 6.98153 7.31628 7.33587 7.34561 7.64279 8.33194 8.57871 9.25708 9.48248 10.09798 10.76357 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.004250 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.412003 B = 6586.641974 C = 7368.971098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.103 3.897 4 N -0.442 5.442 5 C -0.309 4.309 6 H 0.088 0.912 7 C 0.038 3.962 8 N -0.868 5.868 9 Si 0.913 3.087 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.460 3.540 14 O -0.587 6.587 15 C -0.126 4.126 16 C 0.070 3.930 17 N -0.536 5.536 18 C 0.053 3.947 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.110 4.110 22 C 0.083 3.917 23 H 0.036 0.964 24 C -0.151 4.151 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.050 0.950 32 H 0.266 0.734 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.029 0.971 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 -3.836 -14.603 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C -0.022 4.022 4 N -0.161 5.161 5 C -0.436 4.436 6 H 0.106 0.894 7 C -0.166 4.166 8 N -0.506 5.506 9 Si 0.740 3.260 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.248 3.752 14 O -0.471 6.471 15 C -0.166 4.166 16 C -0.058 4.058 17 N -0.261 5.261 18 C -0.075 4.075 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.026 4.026 23 H 0.054 0.946 24 C -0.208 4.208 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.125 0.875 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.640 -3.340 -14.429 15.521 hybrid contribution 0.663 -0.772 0.879 1.345 sum -3.977 -4.113 -13.551 14.709 Atomic orbital electron populations 1.21681 0.96438 1.00596 1.01534 1.21921 0.94721 0.99374 1.01577 1.21614 0.82253 0.94551 1.03762 1.43474 1.04472 1.63663 1.04471 1.19362 1.09255 1.28226 0.86802 0.89426 1.25328 0.97297 0.93715 1.00243 1.69937 1.33160 1.15944 1.31591 0.86156 0.78284 0.79284 0.82310 1.20342 1.20842 1.19466 1.20363 0.88034 0.81490 0.85287 1.90499 1.14288 1.54801 1.87484 1.21528 0.98860 1.03037 0.93202 1.21887 0.94831 1.02212 0.86822 1.61930 1.33204 1.28723 1.02238 1.22112 0.97379 0.89825 0.98185 1.21582 0.98307 1.01296 0.94200 1.21582 0.98971 0.97398 0.97919 1.21627 0.99345 0.97793 0.96062 1.21554 0.93181 0.96772 0.91049 0.94616 1.21953 1.00709 0.96732 1.01432 0.93167 0.93542 0.92773 0.93392 0.91747 0.87470 0.93184 0.92351 0.89621 0.90900 0.94505 0.89577 0.90472 0.95285 0.91084 0.91896 0.92091 0.92535 0.91939 0.91073 0.91558 0.91956 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.14 -2.52 6.26 -26.73 -0.17 -2.68 16 3 C 0.10 2.23 4.83 -4.04 -0.02 2.21 16 4 N -0.44 -11.30 2.52 -114.81 -0.29 -11.59 16 5 C -0.31 -8.65 8.90 -14.93 -0.13 -8.79 16 6 H 0.09 2.58 7.77 -52.49 -0.41 2.17 16 7 C 0.04 1.02 4.95 -17.47 -0.09 0.94 16 8 N -0.87 -23.63 11.49 55.50 0.64 -22.99 16 9 Si 0.91 20.77 29.61 -169.99 -5.03 15.74 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.46 11.41 7.63 -10.98 -0.08 11.33 16 14 O -0.59 -16.57 15.85 5.56 0.09 -16.48 16 15 C -0.13 -2.40 4.30 -27.88 -0.12 -2.52 16 16 C 0.07 1.22 4.07 -3.82 -0.02 1.21 16 17 N -0.54 -7.72 4.44 -226.68 -1.01 -8.73 16 18 C 0.05 0.68 5.30 -3.84 -0.02 0.66 16 19 C -0.12 -1.21 6.09 -26.65 -0.16 -1.38 16 20 C -0.12 -1.17 6.00 -26.60 -0.16 -1.33 16 21 C -0.11 -1.15 5.37 -26.65 -0.14 -1.29 16 22 C 0.08 1.05 2.44 -67.72 -0.17 0.88 16 23 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 24 C -0.15 -1.87 8.59 37.16 0.32 -1.55 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.84 7.29 -51.93 -0.38 0.46 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.11 2.59 5.53 -51.93 -0.29 2.30 16 31 H 0.05 1.00 6.42 -51.93 -0.33 0.67 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.09 1.61 7.40 -51.93 -0.38 1.23 16 34 H 0.07 1.27 5.78 -51.93 -0.30 0.97 16 35 H 0.04 0.69 8.01 -51.93 -0.42 0.27 16 36 H 0.09 1.61 5.49 -51.93 -0.29 1.32 16 37 H 0.08 1.01 6.51 -51.93 -0.34 0.68 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.86 6.41 -51.93 -0.33 0.53 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -30.36 358.76 -9.30 -39.67 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.52 Total: 3.06 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.59 Total: -4.08 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.66 Total: -43.31 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.09 Total: -16.48 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.36 -9.30 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339265429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.409 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds