Wall clock time and date at job start Tue Mar 31 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47478 * 2 1 4 4 N 1.46508 * 109.46844 * 119.99513 * 2 1 3 5 5 C 1.46755 * 124.34763 * 119.95245 * 4 2 1 6 6 C 1.54479 * 105.47319 * 197.03925 * 5 4 2 7 7 H 1.09008 * 111.00400 * 216.45633 * 6 5 4 8 8 N 1.46898 * 110.97145 * 92.70377 * 6 5 4 9 9 C 1.46902 * 110.99833 * 161.17105 * 8 6 5 10 10 C 1.53007 * 109.46803 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47159 * 59.99502 * 10 9 8 12 12 C 1.53001 * 109.46796 * 299.99824 * 10 9 8 13 13 C 1.52998 * 109.46873 * 179.97438 * 10 9 8 14 14 C 1.50699 * 109.46700 * 179.97438 * 13 10 9 15 15 H 1.07999 * 120.00803 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99889 * 180.02562 * 14 13 10 17 17 N 1.31520 * 120.00186 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 C 1.54629 * 101.76341 * 334.58125 * 6 5 4 23 23 C 1.34418 * 124.34822 * 299.97591 * 4 2 1 24 24 O 1.21281 * 124.94415 * 359.53816 * 23 4 2 25 25 H 1.08993 * 109.47285 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47309 * 300.00640 * 1 2 3 27 27 H 1.09002 * 109.46650 * 60.00597 * 1 2 3 28 28 H 1.08996 * 109.47738 * 239.99678 * 2 1 3 29 29 H 1.09000 * 109.47352 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46258 * 299.99684 * 3 2 1 31 31 H 1.08996 * 109.46899 * 59.99164 * 3 2 1 32 32 H 1.09003 * 110.25149 * 78.03993 * 5 4 2 33 33 H 1.08998 * 110.25009 * 316.03971 * 5 4 2 34 34 H 1.00899 * 111.00214 * 37.21521 * 8 6 5 35 35 H 1.08994 * 109.47559 * 59.99796 * 9 8 6 36 36 H 1.09003 * 109.47152 * 299.99122 * 9 8 6 37 37 H 1.09000 * 109.46553 * 179.97438 * 11 10 9 38 38 H 1.08990 * 109.47028 * 300.00132 * 11 10 9 39 39 H 1.09002 * 109.46828 * 60.00097 * 11 10 9 40 40 H 1.09004 * 109.47151 * 299.99889 * 12 10 9 41 41 H 1.08993 * 109.47119 * 60.00189 * 12 10 9 42 42 H 1.09002 * 109.46469 * 180.02562 * 12 10 9 43 43 H 1.09004 * 109.47139 * 60.00071 * 13 10 9 44 44 H 1.08997 * 109.47675 * 299.99671 * 13 10 9 45 45 H 0.96998 * 120.00124 * 180.02562 * 17 16 14 46 46 H 1.09004 * 110.48687 * 143.47607 * 22 6 5 47 47 H 1.08996 * 110.48996 * 266.11942 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8646 -1.8893 1.1730 6 6 2.7595 -2.4956 2.5899 7 1 3.7121 -2.9225 2.9038 8 7 1.6897 -3.5002 2.6538 9 6 1.8634 -4.3809 3.8167 10 6 0.7332 -5.4118 3.8490 11 6 0.7677 -6.2466 2.5672 12 6 -0.6122 -4.6905 3.9518 13 6 0.9145 -6.3294 5.0598 14 6 -0.1990 -7.3444 5.0919 15 1 -0.9596 -7.3362 4.3252 16 6 -0.2468 -8.2837 6.1001 17 7 -1.2182 -9.1698 6.1279 18 14 1.0683 -8.2976 7.4267 19 1 0.6435 -7.4292 8.5540 20 1 2.3448 -7.7888 6.8637 21 1 1.2621 -9.6858 7.9171 22 6 2.4035 -1.2532 3.4388 23 6 1.7482 -0.3078 2.4562 24 8 1.0775 0.6555 2.7610 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.8974 -1.6177 0.9546 33 1 2.4952 -2.5975 0.4313 34 1 1.6439 -4.0346 1.7992 35 1 1.8393 -3.7861 4.7298 36 1 2.8217 -4.8951 3.7432 37 1 -0.0372 -6.9813 2.5905 38 1 0.6389 -5.5932 1.7045 39 1 1.7262 -6.7604 2.4940 40 1 -0.6367 -4.0958 4.8650 41 1 -0.7410 -4.0371 3.0891 42 1 -1.4172 -5.4250 3.9753 43 1 0.8902 -5.7349 5.9731 44 1 1.8729 -6.8433 4.9862 45 1 -1.2520 -9.8303 6.8374 46 1 1.7068 -1.5209 4.2332 47 1 3.3052 -0.8050 3.8560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344482590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:15 Heat of formation + Delta-G solvation = -48.352105 kcal Electronic energy + Delta-G solvation = -23301.650890 eV Core-core repulsion = 20097.720070 eV Total energy + Delta-G solvation = -3203.930820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67914 -37.91063 -36.45091 -35.50418 -32.98769 -31.89048 -29.30345 -27.86099 -27.35973 -27.29819 -26.39476 -24.97734 -22.61663 -22.16232 -21.08330 -18.95733 -17.88147 -16.97901 -16.81033 -16.51199 -15.57754 -15.18705 -14.61598 -14.23006 -14.18029 -13.92633 -13.71974 -13.58447 -13.35420 -13.11625 -12.77314 -12.56834 -12.33573 -12.29730 -12.09836 -11.91831 -11.62813 -11.54690 -11.42270 -11.23654 -11.08695 -10.98923 -10.87264 -10.52498 -10.39077 -9.82452 -9.72053 -9.60698 -9.33915 -8.92658 -8.82251 -8.50639 -8.30476 -6.00827 -3.97202 2.63117 2.87189 3.31582 3.39274 3.41611 4.07382 4.24781 4.26864 4.47294 4.72805 4.78880 4.88954 4.98252 5.18093 5.21109 5.32066 5.38338 5.42163 5.48337 5.51105 5.53368 5.58330 5.63354 5.71345 5.81742 5.86883 5.99784 6.08389 6.12802 6.19844 6.37031 6.53681 6.56325 6.65247 6.77884 7.03363 7.07379 7.08600 7.15758 7.22624 7.30277 7.41023 7.51414 7.84108 8.20410 8.58613 9.05082 9.62143 11.12304 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032078 B = 0.003475 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.651488 B = 8055.658487 C = 8250.027063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.154 3.846 3 C -0.167 4.167 4 N -0.613 5.613 5 C 0.106 3.894 6 C 0.072 3.928 7 H 0.070 0.930 8 N -0.675 5.675 9 C 0.067 3.933 10 C -0.049 4.049 11 C -0.130 4.130 12 C -0.118 4.118 13 C -0.004 4.004 14 C -0.508 4.508 15 H 0.078 0.922 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.267 1.267 21 H -0.290 1.290 22 C -0.148 4.148 23 C 0.531 3.469 24 O -0.535 6.535 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.344 0.656 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.040 0.960 40 H 0.039 0.961 41 H 0.044 0.956 42 H 0.060 0.940 43 H 0.010 0.990 44 H 0.012 0.988 45 H 0.261 0.739 46 H 0.109 0.891 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.669 16.426 -13.041 23.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.052 3.948 3 C -0.225 4.225 4 N -0.348 5.348 5 C -0.018 4.018 6 C -0.039 4.039 7 H 0.088 0.912 8 N -0.309 5.309 9 C -0.061 4.061 10 C -0.049 4.049 11 C -0.187 4.187 12 C -0.175 4.175 13 C -0.042 4.042 14 C -0.546 4.546 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.704 3.296 19 H -0.204 1.204 20 H -0.192 1.192 21 H -0.216 1.216 22 C -0.189 4.189 23 C 0.320 3.680 24 O -0.412 6.412 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.165 0.835 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.029 0.971 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.128 0.872 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.784 17.235 -12.542 23.453 hybrid contribution 1.462 -0.842 0.520 1.766 sum 11.246 16.393 -12.022 23.232 Atomic orbital electron populations 1.22167 0.94570 1.02753 1.03032 1.20893 0.94667 0.92833 0.86450 1.22184 1.00979 0.96071 1.03257 1.48337 1.51355 1.28995 1.06157 1.22249 0.94677 0.87006 0.97839 1.22439 0.94539 0.93155 0.93744 0.91229 1.60539 1.45034 1.18233 1.07134 1.22202 0.97619 0.93617 0.92673 1.20424 0.93917 0.93567 0.96995 1.21775 1.02014 0.99398 0.95542 1.21614 0.96918 0.99150 0.99826 1.19622 0.97368 0.94632 0.92535 1.21132 1.09790 1.12257 1.11372 0.90441 1.25023 0.95423 0.95424 0.97730 1.69909 1.32331 1.18511 1.33760 0.86845 0.83140 0.77033 0.82601 1.20422 1.19196 1.21601 1.22439 1.02629 0.94915 0.98897 1.20750 0.79262 0.84423 0.83577 1.90673 1.39770 1.29222 1.81538 0.92116 0.90984 0.91814 0.89796 0.92733 0.91640 0.90957 0.90894 0.90244 0.83499 0.91395 0.95525 0.91132 0.94666 0.94105 0.94213 0.93735 0.92134 0.97148 0.96942 0.92877 0.87241 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.20 37.16 0.34 -1.33 16 2 C 0.15 1.39 3.48 -67.92 -0.24 1.16 16 3 C -0.17 -1.46 9.20 37.16 0.34 -1.12 16 4 N -0.61 -6.28 2.83 -164.85 -0.47 -6.75 16 5 C 0.11 0.84 7.00 -3.13 -0.02 0.82 16 6 C 0.07 0.69 3.43 -66.08 -0.23 0.46 16 7 H 0.07 0.59 7.92 -51.92 -0.41 0.18 16 8 N -0.68 -8.15 5.55 -105.00 -0.58 -8.73 16 9 C 0.07 0.99 4.50 -3.82 -0.02 0.97 16 10 C -0.05 -0.89 0.60 -154.50 -0.09 -0.98 16 11 C -0.13 -2.24 7.89 37.16 0.29 -1.95 16 12 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 13 C 0.00 -0.09 3.11 -27.88 -0.09 -0.17 16 14 C -0.51 -13.79 8.20 -34.44 -0.28 -14.08 16 15 H 0.08 2.25 5.92 -52.49 -0.31 1.94 16 16 C 0.06 1.84 5.47 -17.82 -0.10 1.75 16 17 N -0.91 -27.60 13.96 55.43 0.77 -26.83 16 18 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 C -0.15 -1.62 6.54 -26.74 -0.17 -1.79 16 23 C 0.53 6.92 7.41 -10.86 -0.08 6.84 16 24 O -0.54 -8.85 15.12 5.56 0.08 -8.76 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.92 6.80 -51.93 -0.35 0.57 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.82 6.77 -51.93 -0.35 0.47 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.56 7.65 -51.93 -0.40 0.17 16 34 H 0.34 3.90 6.24 -39.29 -0.25 3.65 16 35 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 36 H 0.03 0.38 8.09 -51.93 -0.42 -0.04 16 37 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 38 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 42 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 43 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 44 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 45 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.11 1.39 7.78 -51.93 -0.40 0.98 16 47 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -31.60 358.48 -7.96 -39.56 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.46 Total: 0.61 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.04 Total: -11.35 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.28 Total: -42.31 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.60 -7.96 -39.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344482590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.796 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds