Wall clock time and date at job start Tue Mar 31 2020 06:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47020 * 2 1 4 4 N 1.46495 * 109.47195 * 120.00206 * 2 1 3 5 5 C 1.46861 * 124.34037 * 119.97788 * 4 2 1 6 6 C 1.54480 * 105.42547 * 197.01905 * 5 4 2 7 7 H 1.09002 * 110.96988 * 92.71560 * 6 5 4 8 8 N 1.46906 * 110.97067 * 216.44268 * 6 5 4 9 9 C 1.46898 * 110.99564 * 201.91065 * 8 6 5 10 10 C 1.53000 * 109.46663 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47303 * 300.00049 * 10 9 8 12 12 C 1.53000 * 109.47199 * 60.00140 * 10 9 8 13 13 C 1.53007 * 109.47097 * 179.97438 * 10 9 8 14 14 C 1.50700 * 109.46926 * 180.02562 * 13 10 9 15 15 H 1.07996 * 120.00178 * 0.02562 * 14 13 10 16 16 C 1.37878 * 119.99567 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00387 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99709 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47297 * 60.00095 * 18 16 14 20 20 H 1.48508 * 109.47030 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46910 * 299.99974 * 18 16 14 22 22 C 1.54637 * 101.79655 * 334.57702 * 6 5 4 23 23 C 1.34420 * 124.34887 * 299.97693 * 4 2 1 24 24 O 1.21284 * 124.94287 * 359.62216 * 23 4 2 25 25 H 1.09009 * 109.47083 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47302 * 299.99491 * 1 2 3 27 27 H 1.08998 * 109.47243 * 60.00320 * 1 2 3 28 28 H 1.09006 * 109.47232 * 240.00639 * 2 1 3 29 29 H 1.08993 * 109.47483 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47156 * 300.00627 * 3 2 1 31 31 H 1.08999 * 109.46858 * 59.99623 * 3 2 1 32 32 H 1.09003 * 110.26119 * 78.04232 * 5 4 2 33 33 H 1.09004 * 110.28229 * 316.00814 * 5 4 2 34 34 H 1.00895 * 110.99724 * 77.95280 * 8 6 5 35 35 H 1.08993 * 109.47353 * 299.99706 * 9 8 6 36 36 H 1.08995 * 109.47344 * 59.99872 * 9 8 6 37 37 H 1.08995 * 109.47116 * 60.00464 * 11 10 9 38 38 H 1.09001 * 109.47170 * 179.97438 * 11 10 9 39 39 H 1.08995 * 109.47043 * 300.00009 * 11 10 9 40 40 H 1.09002 * 109.47107 * 59.99990 * 12 10 9 41 41 H 1.09001 * 109.47363 * 179.97438 * 12 10 9 42 42 H 1.09002 * 109.47283 * 300.00062 * 12 10 9 43 43 H 1.08993 * 109.47290 * 300.00261 * 13 10 9 44 44 H 1.09000 * 109.46608 * 60.00491 * 13 10 9 45 45 H 0.96995 * 120.00097 * 180.02562 * 17 16 14 46 46 H 1.09000 * 110.48371 * 143.49559 * 22 6 5 47 47 H 1.08995 * 110.48212 * 266.00123 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8657 -1.8898 1.1724 6 6 2.7604 -2.4955 2.5896 7 1 1.9668 -3.2412 2.6371 8 7 4.0444 -3.0705 3.0124 9 6 3.8504 -4.0701 4.0711 10 6 5.2066 -4.6456 4.4839 11 6 5.8698 -5.3065 3.2738 12 6 6.1017 -3.5190 5.0040 13 6 5.0046 -5.6863 5.5871 14 6 6.3406 -6.2527 5.9940 15 1 7.2434 -5.9048 5.5142 16 6 6.4102 -7.2150 6.9790 17 7 5.3108 -7.6389 7.5631 18 14 8.0662 -7.9165 7.4840 19 1 8.9340 -6.8225 7.9893 20 1 7.8700 -8.9276 8.5539 21 1 8.7110 -8.5576 6.3098 22 6 2.4041 -1.2532 3.4386 23 6 1.7484 -0.3081 2.4561 24 8 1.0763 0.6544 2.7610 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.8985 -1.6180 0.9542 33 1 2.4968 -2.5986 0.4309 34 1 4.6836 -2.3485 3.3094 35 1 3.3776 -3.5994 4.9330 36 1 3.2130 -4.8729 3.7005 37 1 6.0138 -4.5648 2.4882 38 1 6.8362 -5.7161 3.5677 39 1 5.2322 -6.1091 2.9033 40 1 5.6292 -3.0482 5.8661 41 1 7.0678 -3.9290 5.2984 42 1 6.2457 -2.7772 4.2184 43 1 4.5324 -5.2152 6.4490 44 1 4.3669 -6.4890 5.2169 45 1 5.3598 -8.3156 8.2562 46 1 1.7076 -1.5212 4.2331 47 1 3.3055 -0.8062 3.8576 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344482591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:18 Heat of formation + Delta-G solvation = -53.104424 kcal Electronic energy + Delta-G solvation = -22915.980565 eV Core-core repulsion = 19711.843670 eV Total energy + Delta-G solvation = -3204.136896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74305 -37.89146 -36.49466 -35.56210 -33.06821 -31.93263 -29.13238 -27.56799 -27.44384 -26.83593 -26.38050 -24.95895 -22.64214 -22.50641 -21.30164 -19.02242 -18.01494 -16.84880 -16.60354 -16.21001 -15.74819 -14.89500 -14.70221 -14.38666 -14.19414 -14.01178 -13.80948 -13.65106 -13.20922 -12.98651 -12.82651 -12.60557 -12.31879 -12.13787 -12.10193 -11.97347 -11.68477 -11.53395 -11.39145 -11.29101 -11.00527 -10.91307 -10.81542 -10.53122 -10.30985 -10.17148 -9.84567 -9.69934 -9.06405 -8.89543 -8.86026 -8.33386 -8.25226 -5.98020 -3.98422 2.48694 2.77565 3.33402 3.38407 3.40268 4.00149 4.34503 4.45341 4.50803 4.62108 4.78959 4.85661 4.91588 5.01385 5.34272 5.35718 5.37801 5.38725 5.44620 5.55068 5.59601 5.60654 5.62371 5.74765 5.75021 5.92944 5.93966 5.99354 6.19070 6.25703 6.44171 6.46137 6.60027 6.73211 6.78683 6.97363 7.10765 7.16571 7.21179 7.29218 7.50196 7.67338 7.81957 8.01832 8.07359 8.45714 9.06755 9.64578 11.13576 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042905 B = 0.002921 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.453949 B = 9584.889441 C = 9714.417626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.152 3.848 3 C -0.168 4.168 4 N -0.617 5.617 5 C 0.111 3.889 6 C 0.080 3.920 7 H 0.098 0.902 8 N -0.673 5.673 9 C 0.069 3.931 10 C -0.059 4.059 11 C -0.116 4.116 12 C -0.130 4.130 13 C 0.034 3.966 14 C -0.508 4.508 15 H 0.058 0.942 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.189 4.189 23 C 0.523 3.477 24 O -0.535 6.535 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.343 0.657 35 H 0.028 0.972 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.065 0.935 42 H 0.032 0.968 43 H 0.013 0.987 44 H 0.015 0.985 45 H 0.260 0.740 46 H 0.100 0.900 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 13.455 -15.311 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.226 4.226 4 N -0.352 5.352 5 C -0.013 4.013 6 C -0.032 4.032 7 H 0.117 0.883 8 N -0.304 5.304 9 C -0.059 4.059 10 C -0.059 4.059 11 C -0.174 4.174 12 C -0.187 4.187 13 C -0.003 4.003 14 C -0.547 4.547 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.231 4.231 23 C 0.311 3.689 24 O -0.412 6.412 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.164 0.836 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.119 0.881 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.639 13.392 -15.591 21.599 hybrid contribution 0.688 -0.003 1.163 1.351 sum -5.952 13.388 -14.428 20.563 Atomic orbital electron populations 1.22184 0.94795 1.02396 1.03193 1.20921 0.94396 0.93096 0.86615 1.22181 1.01296 0.95879 1.03202 1.48535 1.51257 1.29455 1.05999 1.22173 0.95164 0.85745 0.98187 1.22493 0.93909 0.94097 0.92698 0.88347 1.60522 1.09187 1.18059 1.42646 1.22174 0.99070 0.93685 0.90964 1.20645 0.91915 0.96243 0.97118 1.21603 1.00609 0.98927 0.96223 1.21784 1.01243 0.97086 0.98617 1.19116 0.97087 0.92388 0.91743 1.21190 0.93150 1.21074 1.19260 0.92344 1.25011 0.96104 0.96856 0.96573 1.69948 1.26953 1.30627 1.26193 0.86731 0.84635 0.78853 0.78201 1.20358 1.21445 1.20311 1.23208 1.03324 0.97326 0.99227 1.20787 0.79542 0.84776 0.83804 1.90676 1.39888 1.29022 1.81624 0.92449 0.91043 0.91578 0.89454 0.92480 0.91582 0.91030 0.90350 0.90117 0.83608 0.95378 0.91260 0.93901 0.92666 0.94116 0.94019 0.91641 0.94861 0.96889 0.96657 0.93078 0.88115 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 9.20 37.16 0.34 -1.11 16 2 C 0.15 1.31 3.47 -67.93 -0.24 1.07 16 3 C -0.17 -1.45 9.20 37.16 0.34 -1.11 16 4 N -0.62 -6.19 2.83 -164.77 -0.47 -6.65 16 5 C 0.11 0.98 7.04 -3.07 -0.02 0.96 16 6 C 0.08 0.82 3.45 -66.07 -0.23 0.59 16 7 H 0.10 1.02 7.87 -51.93 -0.41 0.61 16 8 N -0.67 -8.08 5.55 -105.00 -0.58 -8.66 16 9 C 0.07 1.06 4.53 -3.83 -0.02 1.04 16 10 C -0.06 -1.09 0.60 -154.50 -0.09 -1.18 16 11 C -0.12 -2.09 8.06 37.16 0.30 -1.79 16 12 C -0.13 -2.25 7.89 37.16 0.29 -1.96 16 13 C 0.03 0.83 4.04 -27.88 -0.11 0.71 16 14 C -0.51 -13.54 7.65 -34.44 -0.26 -13.80 16 15 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 18 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.19 -2.04 6.55 -26.74 -0.18 -2.22 16 23 C 0.52 6.50 7.41 -10.86 -0.08 6.42 16 24 O -0.54 -8.39 15.12 5.55 0.08 -8.31 16 25 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.07 0.80 6.80 -51.93 -0.35 0.44 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.80 6.77 -51.93 -0.35 0.45 16 32 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.34 4.00 6.19 -39.29 -0.24 3.75 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 37 H 0.04 0.67 7.60 -51.93 -0.39 0.28 16 38 H 0.05 1.08 6.62 -51.93 -0.34 0.74 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.26 6.61 -51.93 -0.34 0.91 16 42 H 0.03 0.47 6.57 -51.93 -0.34 0.13 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.10 1.08 7.61 -51.93 -0.39 0.68 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -30.15 362.62 -8.35 -38.50 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.52 Total: 0.05 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.05 Total: -10.93 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: -0.31 Total: -41.02 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.15 -8.35 -38.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344482591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.604 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds