Wall clock time and date at job start Tue Mar 31 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46890 * 2 1 4 4 N 1.46498 * 109.46880 * 180.02562 * 3 2 1 5 5 C 1.36936 * 120.00305 * 91.93009 * 4 3 2 6 6 H 1.07997 * 119.99531 * 7.77680 * 5 4 3 7 7 C 1.38809 * 120.00297 * 187.77660 * 5 4 3 8 8 N 1.31627 * 119.99721 * 25.60386 * 7 5 4 9 9 Si 1.86797 * 120.00430 * 205.60331 * 7 5 4 10 10 H 1.48503 * 109.46838 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47247 * 119.99795 * 9 7 5 12 12 H 1.48496 * 109.47469 * 240.00198 * 9 7 5 13 13 C 1.46504 * 119.99809 * 271.92779 * 4 3 2 14 14 C 1.50705 * 109.46710 * 90.00070 * 13 4 3 15 15 O 1.21274 * 120.00192 * 0.02562 * 14 13 4 16 16 N 1.34780 * 119.99574 * 179.97438 * 14 13 4 17 17 C 1.46501 * 119.99851 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.47104 * 324.99263 * 17 16 14 19 19 C 1.52991 * 109.47295 * 84.99801 * 17 16 14 20 20 C 1.53004 * 109.47152 * 60.00241 * 19 17 16 21 21 C 1.52997 * 109.47344 * 59.99758 * 20 19 17 22 22 C 1.53005 * 109.47069 * 300.00352 * 21 20 19 23 23 C 1.52996 * 109.47239 * 59.99872 * 22 21 20 24 24 H 1.09001 * 109.47192 * 60.00001 * 23 22 21 25 25 C 1.52996 * 109.47309 * 180.02562 * 23 22 21 26 26 H 1.08999 * 109.47386 * 300.00112 * 1 2 3 27 27 H 1.09000 * 109.47049 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47184 * 60.00089 * 1 2 3 29 29 H 1.08994 * 109.46856 * 120.00032 * 2 1 3 30 30 H 1.09000 * 109.46894 * 240.00069 * 2 1 3 31 31 H 1.09002 * 109.47135 * 299.99941 * 3 2 1 32 32 H 1.08999 * 109.47197 * 59.99772 * 3 2 1 33 33 H 0.97000 * 119.99788 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47024 * 209.99796 * 13 4 3 35 35 H 1.09003 * 109.47229 * 330.00236 * 13 4 3 36 36 H 0.97001 * 119.99894 * 359.97438 * 16 14 13 37 37 H 1.09001 * 109.47076 * 180.02562 * 19 17 16 38 38 H 1.08998 * 109.47312 * 299.99834 * 19 17 16 39 39 H 1.09001 * 109.46956 * 299.99860 * 20 19 17 40 40 H 1.09000 * 109.47078 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.47178 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47010 * 60.00136 * 21 20 19 43 43 H 1.09001 * 109.46546 * 299.99996 * 22 21 20 44 44 H 1.09004 * 109.46806 * 180.02562 * 22 21 20 45 45 H 1.09000 * 109.47269 * 180.02562 * 25 23 22 46 46 H 1.09004 * 109.46616 * 300.00273 * 25 23 22 47 47 H 1.09001 * 109.47148 * 59.99784 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1892 1.4826 -1.1861 6 1 3.6563 1.6406 -2.1120 7 6 5.5677 1.3202 -1.1977 8 7 6.1599 0.6524 -0.2303 9 14 6.5825 2.0495 -2.5861 10 1 5.6851 2.7480 -3.5411 11 1 7.5609 3.0175 -2.0286 12 1 7.3083 0.9633 -3.2922 13 6 4.2380 1.3996 1.2671 14 6 4.4893 -0.0351 1.6537 15 8 4.0954 -0.9333 0.9404 16 7 5.1527 -0.3201 2.7918 17 6 5.3975 -1.7148 3.1674 18 1 4.5506 -2.3280 2.8594 19 6 6.6673 -2.2140 2.4752 20 6 7.8560 -1.3533 2.9077 21 6 8.0305 -1.4498 4.4246 22 6 6.7606 -0.9505 5.1169 23 6 5.5720 -1.8113 4.6844 24 1 5.7541 -2.8490 4.9639 25 6 4.3020 -1.3117 5.3761 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 7.1231 0.5386 -0.2386 34 1 5.1903 1.9175 1.1538 35 1 3.6492 1.8875 2.0440 36 1 5.4688 0.3984 3.3618 37 1 6.8491 -3.2519 2.7543 38 1 6.5430 -2.1453 1.3945 39 1 7.6739 -0.3156 2.6282 40 1 8.7607 -1.7093 2.4149 41 1 8.8771 -0.8362 4.7328 42 1 8.2126 -2.4875 4.7041 43 1 6.5786 0.0872 4.8373 44 1 6.8851 -1.0189 6.1976 45 1 3.4553 -1.9252 5.0683 46 1 4.4261 -1.3801 6.4569 47 1 4.1201 -0.2740 5.0962 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345506414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:45 Heat of formation + Delta-G solvation = -37.218416 kcal Electronic energy + Delta-G solvation = -24524.901247 eV Core-core repulsion = 21321.453221 eV Total energy + Delta-G solvation = -3203.448027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.44792 -37.38917 -35.35380 -32.81189 -32.71160 -32.03285 -30.49846 -29.51341 -26.94193 -25.71565 -25.42679 -22.44691 -21.89549 -21.03967 -20.28608 -19.59737 -18.27441 -16.84938 -15.95046 -15.23538 -14.79415 -14.67121 -14.30433 -14.16060 -13.79595 -13.61119 -13.28385 -12.95395 -12.80851 -12.59264 -12.43545 -12.04589 -11.79008 -11.57393 -11.44632 -11.36384 -11.24860 -11.15005 -10.96081 -10.66257 -10.62578 -10.52487 -10.29204 -10.17385 -10.01562 -9.85395 -9.67481 -9.58407 -9.54722 -8.59047 -8.09775 -7.78603 -6.82416 -5.73582 -2.96785 3.42478 3.51688 3.53560 4.31136 4.45269 4.65182 4.92517 4.96983 5.05532 5.37953 5.43868 5.51730 5.52918 5.68621 5.73079 5.82385 5.85173 5.86808 5.90662 5.92953 6.00852 6.07833 6.17171 6.19764 6.25526 6.30681 6.34935 6.38206 6.49428 6.55606 6.60428 6.62444 6.65787 6.74565 6.83827 6.96308 6.98895 7.16962 7.23577 7.47308 7.72103 7.86116 8.34085 8.83634 9.24784 9.85044 10.01702 10.36123 11.35987 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014029 B = 0.007074 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.457265 B = 3957.247436 C = 5462.666617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.151 3.849 4 N -0.575 5.575 5 C -0.240 4.240 6 H 0.075 0.925 7 C -0.002 4.002 8 N -0.892 5.892 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.296 1.296 13 C 0.161 3.839 14 C 0.530 3.470 15 O -0.528 6.528 16 N -0.740 5.740 17 C 0.161 3.839 18 H 0.073 0.927 19 C -0.125 4.125 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.098 4.098 24 H 0.072 0.928 25 C -0.143 4.143 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.250 0.750 34 H 0.101 0.899 35 H 0.031 0.969 36 H 0.382 0.618 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.048 0.952 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 -1.833 12.030 12.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.025 3.975 4 N -0.294 5.294 5 C -0.369 4.369 6 H 0.093 0.907 7 C -0.199 4.199 8 N -0.537 5.537 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.223 1.223 13 C 0.031 3.969 14 C 0.316 3.684 15 O -0.402 6.402 16 N -0.396 5.396 17 C 0.055 3.945 18 H 0.091 0.909 19 C -0.163 4.163 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.149 4.149 23 C -0.117 4.117 24 H 0.090 0.910 25 C -0.200 4.200 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.049 0.951 36 H 0.215 0.785 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.971 -2.477 11.439 11.744 hybrid contribution 1.044 0.288 -0.518 1.200 sum 0.073 -2.190 10.921 11.139 Atomic orbital electron populations 1.21790 0.98296 1.00146 1.00377 1.22180 0.92341 1.00471 1.03008 1.20896 0.84290 0.93936 0.98419 1.44047 0.99664 1.83605 1.02076 1.19249 0.89480 1.41933 0.86258 0.90675 1.24636 0.97203 1.00051 0.98057 1.69959 1.08869 1.40238 1.34685 0.86295 0.80313 0.78875 0.81831 1.20622 1.21871 1.22314 1.20719 0.97879 0.91828 0.86499 1.21939 0.74911 0.93645 0.77856 1.90487 1.51535 1.48657 1.49499 1.46289 1.61434 1.05884 1.26005 1.20561 0.96965 0.85448 0.91487 0.90941 1.21835 0.94827 0.97410 1.02260 1.21414 0.97677 1.01806 0.94093 1.21550 0.97013 1.00479 0.96485 1.21556 0.94586 0.99663 0.99102 1.21405 0.95029 0.99780 0.95501 0.90988 1.21779 0.97222 1.01851 0.99179 0.93843 0.94048 0.93664 0.91926 0.92266 0.93605 0.94881 0.93983 0.88133 0.95080 0.78515 0.93277 0.90436 0.90899 0.93140 0.92688 0.92698 0.91924 0.92558 0.92895 0.93332 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.14 -2.92 5.44 -26.73 -0.15 -3.06 16 3 C 0.15 3.21 5.71 -4.04 -0.02 3.18 16 4 N -0.57 -14.18 2.09 -174.61 -0.37 -14.54 16 5 C -0.24 -6.55 9.70 -15.06 -0.15 -6.69 16 6 H 0.08 2.06 7.92 -52.49 -0.42 1.64 16 7 C 0.00 -0.06 4.89 -17.43 -0.09 -0.15 16 8 N -0.89 -24.38 9.01 55.49 0.50 -23.88 16 9 Si 0.90 21.82 29.62 -169.99 -5.04 16.78 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 13 C 0.16 3.67 5.47 -5.19 -0.03 3.64 16 14 C 0.53 11.93 5.73 -10.98 -0.06 11.87 16 15 O -0.53 -14.02 13.44 5.56 0.07 -13.94 16 16 N -0.74 -13.28 3.54 -53.80 -0.19 -13.47 16 17 C 0.16 2.66 2.23 -67.93 -0.15 2.51 16 18 H 0.07 1.37 7.58 -51.93 -0.39 0.98 16 19 C -0.12 -2.13 5.60 -26.73 -0.15 -2.28 16 20 C -0.11 -1.72 5.77 -26.73 -0.15 -1.88 16 21 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 22 C -0.11 -1.29 5.03 -26.73 -0.13 -1.43 16 23 C -0.10 -1.24 2.52 -90.62 -0.23 -1.47 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 C -0.14 -1.68 9.03 37.16 0.34 -1.35 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.42 6.39 -51.93 -0.33 1.09 16 30 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.05 0.95 8.00 -51.93 -0.42 0.53 16 32 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 33 H 0.25 6.78 8.31 -40.82 -0.34 6.45 16 34 H 0.10 2.46 6.27 -51.93 -0.33 2.14 16 35 H 0.03 0.62 7.91 -51.93 -0.41 0.21 16 36 H 0.38 6.08 6.65 -40.82 -0.27 5.81 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 39 H 0.07 1.27 7.60 -51.93 -0.39 0.88 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.75 6.51 -51.93 -0.34 0.41 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.72 7.44 -51.93 -0.39 0.33 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -29.80 356.32 -9.14 -38.93 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.73 Total: 5.52 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -0.76 Total: -0.76 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.06 Total: -51.89 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.07 Total: -13.94 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.04 Total: 16.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.80 -9.14 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345506414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.713 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds