Wall clock time and date at job start Tue Mar 31 2020 06:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47414 * 2 1 4 4 N 1.46500 * 109.47321 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99763 * 269.99612 * 4 3 2 6 6 H 1.07999 * 119.99980 * 334.30925 * 5 4 3 7 7 C 1.38817 * 119.99587 * 154.30813 * 5 4 3 8 8 N 1.31612 * 120.00407 * 355.77576 * 7 5 4 9 9 Si 1.86803 * 119.99716 * 175.77733 * 7 5 4 10 10 H 1.48502 * 109.46840 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47045 * 119.99745 * 9 7 5 12 12 H 1.48499 * 109.47201 * 240.00119 * 9 7 5 13 13 C 1.46497 * 120.00366 * 89.99771 * 4 3 2 14 14 C 1.50698 * 109.46954 * 275.77845 * 13 4 3 15 15 O 1.21273 * 120.00412 * 359.97438 * 14 13 4 16 16 N 1.34786 * 119.99935 * 179.97438 * 14 13 4 17 17 C 1.46501 * 120.00111 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.46514 * 325.00291 * 17 16 14 19 19 C 1.53002 * 109.46966 * 84.99903 * 17 16 14 20 20 C 1.52995 * 109.46799 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47564 * 300.00367 * 20 19 17 22 22 C 1.52997 * 109.47053 * 59.99879 * 21 20 19 23 23 C 1.52995 * 109.46948 * 205.00306 * 17 16 14 24 24 H 1.09006 * 109.46947 * 299.99883 * 23 17 16 25 25 C 1.52997 * 109.47308 * 59.99896 * 23 17 16 26 26 H 1.09003 * 109.46272 * 299.99955 * 1 2 3 27 27 H 1.08995 * 109.46805 * 59.99794 * 1 2 3 28 28 H 1.08994 * 109.46886 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46866 * 239.99588 * 2 1 3 30 30 H 1.09006 * 109.47232 * 120.00357 * 2 1 3 31 31 H 1.08998 * 109.47610 * 60.00296 * 3 2 1 32 32 H 1.09005 * 109.47277 * 299.99821 * 3 2 1 33 33 H 0.96997 * 120.00265 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47356 * 155.77902 * 13 4 3 35 35 H 1.09000 * 109.47215 * 35.77730 * 13 4 3 36 36 H 0.96999 * 119.99749 * 359.97438 * 16 14 13 37 37 H 1.08997 * 109.46921 * 59.99959 * 19 17 16 38 38 H 1.08996 * 109.46877 * 300.00125 * 19 17 16 39 39 H 1.09000 * 109.47263 * 179.97438 * 20 19 17 40 40 H 1.09006 * 109.46878 * 60.00782 * 20 19 17 41 41 H 1.08997 * 109.46837 * 300.00252 * 21 20 19 42 42 H 1.08994 * 109.47168 * 180.02562 * 21 20 19 43 43 H 1.09006 * 109.47127 * 60.00388 * 22 21 20 44 44 H 1.09003 * 109.47403 * 180.02562 * 22 21 20 45 45 H 1.09003 * 109.47046 * 179.97438 * 25 23 17 46 46 H 1.08994 * 109.47285 * 299.99823 * 25 23 17 47 47 H 1.08997 * 109.46994 * 60.00179 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.4423 1.1851 6 1 3.7307 1.8477 2.0744 7 6 5.4755 0.9210 1.2439 8 7 6.0042 0.3520 0.1814 9 14 6.4547 1.0273 2.8312 10 1 5.6412 1.7090 3.8699 11 1 6.8006 -0.3414 3.2919 12 1 7.7007 1.7993 2.5934 13 6 4.2371 1.4425 -1.2696 14 6 4.3642 0.0290 -1.7763 15 8 3.8904 -0.8883 -1.1399 16 7 5.0044 -0.2159 -2.9368 17 6 5.1284 -1.5901 -3.4292 18 1 5.2467 -2.2692 -2.5848 19 6 3.8699 -1.9663 -4.2138 20 6 3.9997 -3.4012 -4.7285 21 6 5.2215 -3.5064 -5.6433 22 6 6.4800 -3.1302 -4.8587 23 6 6.3503 -1.6958 -4.3438 24 1 6.2320 -1.0166 -5.1881 25 6 7.6088 -1.3196 -3.5592 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6769 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 6.9021 -0.0125 0.2226 34 1 5.2305 1.8641 -1.1160 35 1 3.6965 2.0434 -2.0009 36 1 5.3830 0.5177 -3.4460 37 1 3.7516 -1.2871 -5.0580 38 1 2.9995 -1.8910 -3.5621 39 1 3.1030 -3.6694 -5.2871 40 1 4.1182 -4.0806 -3.8844 41 1 5.1030 -2.8270 -6.4873 42 1 5.3137 -4.5285 -6.0103 43 1 6.5985 -3.8097 -4.0146 44 1 7.3504 -3.2047 -5.5105 45 1 8.4794 -1.3954 -4.2107 46 1 7.5165 -0.2972 -3.1929 47 1 7.7271 -1.9988 -2.7149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345506420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:48 Heat of formation + Delta-G solvation = -42.914621 kcal Electronic energy + Delta-G solvation = -24272.983684 eV Core-core repulsion = 21069.288651 eV Total energy + Delta-G solvation = -3203.695033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.25817 -37.49959 -35.36483 -33.16553 -32.74069 -32.07533 -30.49712 -29.28619 -26.88181 -25.68148 -25.38767 -22.57650 -21.70597 -20.98096 -19.99928 -19.69761 -18.96687 -16.80897 -15.84571 -15.36376 -14.98938 -14.42047 -14.23352 -14.11390 -13.84790 -13.74611 -13.35039 -13.04608 -12.66785 -12.62115 -12.46231 -12.06776 -11.92503 -11.67372 -11.35776 -11.29375 -11.09950 -10.93407 -10.91234 -10.69673 -10.68146 -10.48880 -10.33130 -10.28659 -10.13215 -9.89850 -9.82568 -9.73405 -9.40819 -8.64652 -8.09541 -7.81594 -6.63201 -5.73125 -3.13898 3.40827 3.48764 3.50064 4.26570 4.40767 4.61837 4.85304 4.94413 5.07601 5.29219 5.41580 5.48396 5.59742 5.62686 5.66754 5.72786 5.75471 5.86363 5.93660 5.97200 5.98324 6.10529 6.21329 6.23364 6.27355 6.30181 6.37333 6.37772 6.40814 6.45172 6.59752 6.60822 6.68009 6.72650 6.74280 6.85457 7.03733 7.26716 7.28906 7.57579 7.72773 7.84639 8.44937 8.82933 9.27759 9.83962 10.01836 10.39721 11.36219 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015108 B = 0.006268 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.916179 B = 4465.825378 C = 5802.263510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.152 3.848 4 N -0.575 5.575 5 C -0.247 4.247 6 H 0.070 0.930 7 C 0.006 3.994 8 N -0.900 5.900 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.167 3.833 14 C 0.532 3.468 15 O -0.527 6.527 16 N -0.746 5.746 17 C 0.160 3.840 18 H 0.079 0.921 19 C -0.127 4.127 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.095 4.095 24 H 0.066 0.934 25 C -0.141 4.141 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.030 0.970 33 H 0.251 0.749 34 H 0.102 0.898 35 H 0.026 0.974 36 H 0.383 0.617 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -2.782 -12.197 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C 0.025 3.975 4 N -0.295 5.295 5 C -0.376 4.376 6 H 0.088 0.912 7 C -0.192 4.192 8 N -0.545 5.545 9 Si 0.738 3.262 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.037 3.963 14 C 0.319 3.681 15 O -0.401 6.401 16 N -0.400 5.400 17 C 0.054 3.946 18 H 0.097 0.903 19 C -0.166 4.166 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.114 4.114 24 H 0.084 0.916 25 C -0.199 4.199 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.120 0.880 35 H 0.044 0.956 36 H 0.214 0.786 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.327 -3.470 -11.637 12.216 hybrid contribution 0.927 -0.013 0.617 1.113 sum -0.400 -3.483 -11.020 11.564 Atomic orbital electron populations 1.21803 0.98642 1.00003 1.00177 1.22247 0.91939 1.00395 1.03608 1.20905 0.84625 0.94026 0.97924 1.43749 0.99567 1.84384 1.01780 1.19233 0.97061 1.32950 0.88405 0.91204 1.25005 0.98972 0.98032 0.97189 1.69664 1.15463 1.41826 1.27596 0.86145 0.79713 0.77058 0.83320 1.20502 1.21920 1.21909 1.20491 0.98522 0.90922 0.86377 1.21882 0.75023 0.93950 0.77293 1.90457 1.47890 1.46552 1.55178 1.46245 1.61598 1.06754 1.25388 1.20620 0.92165 0.86254 0.95531 0.90324 1.21929 0.99525 0.95593 0.99531 1.21489 0.97393 0.97483 0.99085 1.21539 0.95120 1.00688 0.98206 1.21549 0.97296 0.96401 0.99654 1.21352 0.95557 0.96618 0.97883 0.91558 1.21752 0.95840 1.02758 0.99535 0.93854 0.93982 0.94142 0.90884 0.92445 0.94076 0.95136 0.93798 0.88017 0.95650 0.78565 0.92651 0.91660 0.92466 0.92008 0.92262 0.92461 0.91906 0.92212 0.93695 0.91726 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.91 37.16 0.37 -2.17 16 2 C -0.14 -3.08 5.39 -26.73 -0.14 -3.22 16 3 C 0.15 3.32 5.70 -4.05 -0.02 3.29 16 4 N -0.58 -14.44 2.16 -174.61 -0.38 -14.82 16 5 C -0.25 -6.77 9.66 -15.05 -0.15 -6.92 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C 0.01 0.16 5.21 -17.43 -0.09 0.07 16 8 N -0.90 -24.96 8.62 55.49 0.48 -24.49 16 9 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.17 3.86 5.41 -5.20 -0.03 3.83 16 14 C 0.53 12.09 5.74 -10.98 -0.06 12.03 16 15 O -0.53 -14.00 12.52 5.56 0.07 -13.93 16 16 N -0.75 -13.59 4.38 -53.81 -0.24 -13.83 16 17 C 0.16 2.66 1.90 -67.93 -0.13 2.53 16 18 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 19 C -0.13 -1.90 5.50 -26.73 -0.15 -2.04 16 20 C -0.12 -1.47 5.92 -26.74 -0.16 -1.63 16 21 C -0.12 -1.29 5.92 -26.74 -0.16 -1.44 16 22 C -0.11 -1.30 5.20 -26.76 -0.14 -1.44 16 23 C -0.10 -1.27 2.29 -90.65 -0.21 -1.48 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 25 C -0.14 -2.02 9.04 37.16 0.34 -1.68 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.73 5.74 -51.93 -0.30 1.44 16 30 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 32 H 0.03 0.60 7.95 -51.93 -0.41 0.19 16 33 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.10 2.51 6.51 -51.93 -0.34 2.18 16 35 H 0.03 0.52 7.97 -51.93 -0.41 0.10 16 36 H 0.38 6.07 8.39 -40.82 -0.34 5.72 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 1.01 7.44 -51.93 -0.39 0.62 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -30.16 359.25 -9.30 -39.46 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -8.89 Total: 5.36 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -0.73 Total: -0.28 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.14 Total: -53.14 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.07 Total: -13.93 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.16 -9.30 -39.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345506420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.454 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds