Wall clock time and date at job start Tue Mar 31 2020 05:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47083 * 2 1 4 4 H 1.08996 * 109.47212 * 305.00561 * 3 2 1 5 5 C 1.53001 * 109.46965 * 65.00157 * 3 2 1 6 6 C 1.52998 * 109.47446 * 185.00046 * 3 2 1 7 7 H 1.08999 * 109.46921 * 55.47817 * 6 3 2 8 8 C 1.53006 * 109.47199 * 295.48500 * 6 3 2 9 9 N 1.46497 * 109.47019 * 175.48230 * 6 3 2 10 10 C 1.34776 * 120.00125 * 295.57211 * 9 6 3 11 11 O 1.21586 * 119.99618 * 354.40583 * 10 9 6 12 12 N 1.34778 * 120.00196 * 174.41118 * 10 9 6 13 13 C 1.46497 * 120.00140 * 185.12272 * 12 10 9 14 14 C 1.52999 * 109.47287 * 179.97438 * 13 12 10 15 15 C 1.50692 * 109.47117 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00255 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00138 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99448 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00197 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47407 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47024 * 120.00349 * 19 17 15 22 22 H 1.48503 * 109.46792 * 239.99750 * 19 17 15 23 23 C 1.46503 * 120.00046 * 115.57645 * 9 6 3 24 24 C 1.52994 * 117.50067 * 133.46730 * 23 9 6 25 25 C 1.53000 * 117.49761 * 64.84311 * 23 9 6 26 26 H 1.08990 * 109.47185 * 60.00198 * 1 2 3 27 27 H 1.09007 * 109.46659 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47223 * 299.99464 * 1 2 3 29 29 H 1.08997 * 109.47675 * 240.00378 * 2 1 3 30 30 H 1.09003 * 109.47405 * 120.00030 * 2 1 3 31 31 H 1.09000 * 109.47341 * 63.87462 * 5 3 2 32 32 H 1.08999 * 109.47241 * 183.87680 * 5 3 2 33 33 H 1.09002 * 109.47164 * 303.87227 * 5 3 2 34 34 H 1.09006 * 109.46670 * 299.99901 * 8 6 3 35 35 H 1.08997 * 109.46926 * 59.99154 * 8 6 3 36 36 H 1.08999 * 109.46846 * 180.02562 * 8 6 3 37 37 H 0.97004 * 119.99812 * 5.11945 * 12 10 9 38 38 H 1.09006 * 109.46779 * 299.99919 * 13 12 10 39 39 H 1.08999 * 109.47236 * 59.99298 * 13 12 10 40 40 H 1.08994 * 109.47222 * 300.00195 * 14 13 12 41 41 H 1.09008 * 109.46886 * 59.99928 * 14 13 12 42 42 H 0.97007 * 119.99460 * 179.97438 * 18 17 15 43 43 H 1.09003 * 115.54834 * 279.17749 * 23 9 6 44 44 H 1.08998 * 117.50102 * 0.02562 * 24 23 9 45 45 H 1.09003 * 117.50151 * 145.01923 * 24 23 9 46 46 H 1.08997 * 117.49871 * 214.97848 * 25 23 9 47 47 H 1.08999 * 117.50159 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4445 -0.1257 7 1 3.8566 0.8874 -1.0160 8 6 4.1794 0.7869 1.1115 9 7 4.0440 2.8246 -0.2342 10 6 3.7039 3.5742 -1.3014 11 8 3.0854 3.0758 -2.2220 12 7 4.0494 4.8761 -1.3482 13 6 3.5843 5.7181 -2.4531 14 6 4.1133 7.1416 -2.2671 15 6 3.6354 8.0076 -3.4040 16 1 3.0167 7.5849 -4.1818 17 6 3.9889 9.3395 -3.4520 18 7 4.7437 9.8539 -2.5057 19 14 3.3960 10.4131 -4.8609 20 1 2.5682 9.6005 -5.7881 21 1 2.5824 11.5324 -4.3219 22 1 4.5666 10.9599 -5.5931 23 6 4.8932 3.3899 0.8173 24 6 6.1444 4.1543 0.3802 25 6 6.2774 2.7695 1.0172 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.1252 1.6293 2.1445 32 1 1.9381 3.1732 1.2788 33 1 0.5539 2.0645 1.4303 34 1 3.8875 1.3440 2.0019 35 1 3.8227 -0.2399 1.1923 36 1 5.2657 0.7887 1.0221 37 1 4.6060 5.2555 -0.6502 38 1 3.9510 5.3142 -3.3969 39 1 2.4945 5.7343 -2.4638 40 1 3.7464 7.5452 -1.3235 41 1 5.2032 7.1257 -2.2562 42 1 4.9927 10.7908 -2.5396 43 1 4.3689 3.7470 1.7037 44 1 6.3356 4.2369 -0.6897 45 1 6.4435 5.0146 0.9790 46 1 6.6639 2.7189 2.0351 47 1 6.5565 1.9411 0.3662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345815066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:09 Heat of formation + Delta-G solvation = -18.978665 kcal Electronic energy + Delta-G solvation = -23426.656829 eV Core-core repulsion = 20223.999737 eV Total energy + Delta-G solvation = -3202.657092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48920 -37.62845 -36.93561 -34.72071 -33.07430 -32.74661 -30.77010 -29.14189 -28.62678 -25.45968 -24.75746 -23.00094 -22.59910 -22.23725 -20.73370 -19.88926 -18.77526 -17.40099 -16.53672 -16.30986 -15.74353 -15.23651 -14.89833 -14.57571 -14.49493 -14.24833 -13.87733 -13.72599 -13.09232 -12.91661 -12.66712 -12.33501 -12.27899 -12.13261 -11.96277 -11.86121 -11.53409 -11.16089 -11.15273 -11.01289 -10.83996 -10.67996 -10.60024 -10.56543 -10.50398 -10.36599 -10.24139 -9.71279 -9.44646 -9.18920 -8.59664 -8.42275 -8.08208 -6.06778 -4.08911 2.90186 3.30126 3.37665 3.43290 3.50956 3.63872 4.26551 4.46313 4.70022 4.74067 4.78013 4.84022 4.93214 5.05868 5.09434 5.23047 5.30430 5.35353 5.43480 5.49778 5.51903 5.59550 5.67631 5.80786 5.84326 5.86462 5.90251 5.99166 6.00380 6.04461 6.12015 6.14989 6.33439 6.39424 6.45339 6.49894 6.80541 6.83392 7.11685 7.29783 7.60412 7.67327 7.93017 8.29968 8.48733 8.96553 9.09573 9.55663 11.04949 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020998 B = 0.003829 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.147220 B = 7310.221224 C = 8225.157839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.109 4.109 4 H 0.088 0.912 5 C -0.145 4.145 6 C 0.175 3.825 7 H 0.071 0.929 8 C -0.164 4.164 9 N -0.606 5.606 10 C 0.703 3.297 11 O -0.594 6.594 12 N -0.739 5.739 13 C 0.138 3.862 14 C 0.014 3.986 15 C -0.518 4.518 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.067 3.933 24 C -0.190 4.190 25 C -0.174 4.174 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.261 0.739 43 H 0.113 0.887 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 -18.350 11.941 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.128 4.128 4 H 0.106 0.894 5 C -0.202 4.202 6 C 0.072 3.928 7 H 0.089 0.911 8 C -0.222 4.222 9 N -0.344 5.344 10 C 0.405 3.595 11 O -0.473 6.473 12 N -0.395 5.395 13 C 0.015 3.985 14 C -0.024 4.024 15 C -0.557 4.557 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.038 4.038 24 C -0.228 4.228 25 C -0.212 4.212 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.232 0.768 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.129 0.871 46 H 0.120 0.880 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.536 -18.521 11.288 21.696 hybrid contribution 0.039 0.974 -0.370 1.043 sum -0.497 -17.546 10.918 20.672 Atomic orbital electron populations 1.21807 0.95963 1.01134 1.02067 1.21526 0.95929 0.96157 1.01602 1.21584 0.95256 0.96438 0.99554 0.89398 1.21883 1.00817 1.00606 0.96869 1.20733 0.93085 0.80674 0.98293 0.91126 1.22301 1.01521 1.00603 0.97733 1.46768 1.53374 1.13237 1.21048 1.15978 0.79915 0.81707 0.81906 1.90864 1.46959 1.72347 1.37095 1.45851 1.55866 1.08065 1.29725 1.21570 0.98357 0.91449 0.87127 1.19308 0.96767 0.88351 0.97933 1.21101 1.31941 0.94298 1.08387 0.92201 1.24996 0.95035 0.98050 0.96240 1.69975 1.36585 1.13649 1.33158 0.86468 0.78580 0.80350 0.82239 1.19575 1.20962 1.20970 1.21547 0.85679 1.02856 0.93719 1.23509 1.00152 0.96162 1.02962 1.23339 0.98754 0.96764 1.02348 0.92639 0.93117 0.92608 0.92066 0.92110 0.92748 0.92833 0.92873 0.91515 0.91476 0.91517 0.76782 0.92871 0.93028 0.96077 0.96063 0.92973 0.86926 0.87591 0.87126 0.87990 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.11 -1.13 5.02 -26.73 -0.13 -1.27 16 3 C -0.11 -1.33 2.10 -90.62 -0.19 -1.52 16 4 H 0.09 1.41 6.59 -51.93 -0.34 1.07 16 5 C -0.14 -1.59 8.52 37.16 0.32 -1.27 16 6 C 0.18 2.13 2.35 -67.93 -0.16 1.97 16 7 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 8 C -0.16 -1.42 7.27 37.16 0.27 -1.15 16 9 N -0.61 -8.42 2.42 -164.24 -0.40 -8.82 16 10 C 0.70 12.98 7.63 -86.92 -0.66 12.32 16 11 O -0.59 -13.03 14.99 5.29 0.08 -12.95 16 12 N -0.74 -13.91 4.90 -65.23 -0.32 -14.23 16 13 C 0.14 3.08 5.62 -4.04 -0.02 3.06 16 14 C 0.01 0.35 5.09 -27.89 -0.14 0.21 16 15 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 16 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 17 C 0.06 1.65 5.46 -17.81 -0.10 1.55 16 18 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 19 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.07 0.74 4.49 -67.93 -0.31 0.44 16 24 C -0.19 -2.09 8.07 -26.73 -0.22 -2.31 16 25 C -0.17 -1.55 8.36 -26.73 -0.22 -1.77 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.51 6.48 -51.93 -0.34 0.17 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.51 6.80 -51.93 -0.35 0.16 16 31 H 0.05 0.50 6.13 -51.93 -0.32 0.18 16 32 H 0.05 0.68 7.85 -51.93 -0.41 0.27 16 33 H 0.05 0.56 6.39 -51.93 -0.33 0.23 16 34 H 0.07 0.55 5.80 -51.93 -0.30 0.25 16 35 H 0.07 0.50 6.66 -51.93 -0.35 0.15 16 36 H 0.07 0.54 5.27 -51.93 -0.27 0.27 16 37 H 0.40 6.70 5.19 -40.82 -0.21 6.48 16 38 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.02 0.56 8.14 -51.92 -0.42 0.13 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.11 1.41 7.33 -51.93 -0.38 1.03 16 45 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.10 0.92 7.15 -51.93 -0.37 0.55 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -31.51 358.45 -9.21 -40.72 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -8.16 Total: 4.61 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.52 Total: -5.74 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.02 Total: -48.59 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.51 -9.21 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345815066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.740 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds