Wall clock time and date at job start Tue Mar 31 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47348 * 2 1 4 4 H 1.09002 * 109.46667 * 54.99586 * 3 2 1 5 5 C 1.53004 * 109.47034 * 295.00292 * 3 2 1 6 6 C 1.52999 * 109.47403 * 175.00241 * 3 2 1 7 7 H 1.08993 * 109.47252 * 60.07366 * 6 3 2 8 8 C 1.52997 * 109.46918 * 180.02562 * 6 3 2 9 9 N 1.46495 * 109.46800 * 300.07233 * 6 3 2 10 10 C 1.34782 * 119.99793 * 115.14568 * 9 6 3 11 11 O 1.21583 * 120.00263 * 3.91383 * 10 9 6 12 12 N 1.34776 * 119.99810 * 183.91524 * 10 9 6 13 13 C 1.46499 * 119.99922 * 184.65648 * 12 10 9 14 14 C 1.53000 * 109.47625 * 180.02562 * 13 12 10 15 15 C 1.50690 * 109.47380 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00788 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00179 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99813 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00480 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46792 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47137 * 120.00107 * 19 17 15 22 22 H 1.48493 * 109.47295 * 240.00097 * 19 17 15 23 23 C 1.46501 * 120.00366 * 295.14459 * 9 6 3 24 24 C 1.52994 * 117.49863 * 132.54239 * 23 9 6 25 25 C 1.52994 * 117.49876 * 63.88188 * 23 9 6 26 26 H 1.09006 * 109.47296 * 299.99962 * 1 2 3 27 27 H 1.09005 * 109.47142 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47347 * 60.00072 * 1 2 3 29 29 H 1.08997 * 109.47347 * 119.99928 * 2 1 3 30 30 H 1.09006 * 109.47296 * 240.00038 * 2 1 3 31 31 H 1.08998 * 109.47067 * 175.07083 * 5 3 2 32 32 H 1.09005 * 109.46792 * 295.07000 * 5 3 2 33 33 H 1.09004 * 109.47265 * 55.07019 * 5 3 2 34 34 H 1.09004 * 109.47019 * 179.97438 * 8 6 3 35 35 H 1.09003 * 109.47446 * 299.99644 * 8 6 3 36 36 H 1.08999 * 109.47414 * 60.00250 * 8 6 3 37 37 H 0.97000 * 120.00395 * 4.65573 * 12 10 9 38 38 H 1.09006 * 109.47566 * 299.99831 * 13 12 10 39 39 H 1.08998 * 109.47238 * 59.99598 * 13 12 10 40 40 H 1.09005 * 109.46435 * 299.99866 * 14 13 12 41 41 H 1.08998 * 109.47235 * 59.99480 * 14 13 12 42 42 H 0.96995 * 120.00296 * 179.97438 * 18 17 15 43 43 H 1.09007 * 115.54790 * 278.20863 * 23 9 6 44 44 H 1.08996 * 117.50395 * 0.02562 * 24 23 9 45 45 H 1.09002 * 117.50118 * 145.02352 * 24 23 9 46 46 H 1.09003 * 117.49486 * 214.98137 * 25 23 9 47 47 H 1.09003 * 117.49882 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.9994 0.9065 -0.7168 8 6 4.0747 2.8868 0.1263 9 7 3.9524 0.7878 1.3766 10 6 4.6510 -0.3644 1.3446 11 8 5.0210 -0.8217 0.2805 12 7 4.9394 -1.0096 2.4922 13 6 5.7847 -2.2059 2.4673 14 6 5.9544 -2.7402 3.8909 15 6 6.8244 -3.9703 3.8654 16 1 7.2168 -4.3351 2.9277 17 6 7.1196 -4.6305 5.0394 18 7 6.6423 -4.1862 6.1815 19 14 8.1975 -6.1558 5.0078 20 1 8.6029 -6.4465 3.6090 21 1 9.4078 -5.9240 5.8365 22 1 7.4382 -7.3099 5.5525 23 6 3.5807 1.3836 2.6623 24 6 2.9612 0.4623 3.7151 25 6 2.0894 1.4888 2.9874 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.9214 3.1777 -1.2712 32 1 2.1397 1.6411 -2.1428 33 1 0.5560 2.0482 -1.4395 34 1 5.1610 2.8882 0.2163 35 1 3.7863 3.3746 -0.8049 36 1 3.6401 3.4255 0.9684 37 1 4.5874 -0.6820 3.3346 38 1 5.3157 -2.9695 1.8467 39 1 6.7613 -1.9522 2.0552 40 1 6.4233 -1.9768 4.5119 41 1 4.9777 -2.9940 4.3027 42 1 6.8497 -4.6507 7.0074 43 1 4.2304 2.1849 3.0145 44 1 2.8305 -0.5871 3.4513 45 1 3.2029 0.6578 4.7598 46 1 1.7580 2.3592 3.5538 47 1 1.3848 1.1151 2.2445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345815067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:12 Heat of formation + Delta-G solvation = -16.184201 kcal Electronic energy + Delta-G solvation = -23606.264312 eV Core-core repulsion = 20403.728398 eV Total energy + Delta-G solvation = -3202.535915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.55334 -37.76621 -36.54577 -34.74718 -33.36214 -32.73626 -31.05242 -29.37431 -28.17198 -25.65135 -24.63131 -22.97583 -22.63176 -22.04203 -20.83603 -19.94825 -19.29282 -17.44507 -16.59203 -16.26575 -15.55403 -15.18795 -14.83353 -14.53312 -14.45554 -14.23218 -13.87799 -13.74290 -13.04975 -12.84996 -12.78216 -12.67127 -12.33895 -12.19292 -11.91539 -11.71686 -11.51079 -11.37072 -11.17476 -11.02830 -10.89926 -10.68237 -10.60840 -10.58810 -10.50834 -10.28069 -10.25969 -9.74187 -9.46589 -9.19949 -8.63924 -8.43144 -8.10825 -6.06848 -4.09036 2.90500 3.30103 3.37640 3.43242 3.50881 3.61783 4.25131 4.45509 4.60463 4.70374 4.75182 4.78841 4.88767 5.07522 5.21936 5.27946 5.30328 5.36513 5.39721 5.43849 5.47034 5.52762 5.66470 5.74241 5.79699 5.87288 5.90323 5.92068 5.97126 5.98212 6.03899 6.17597 6.29173 6.36504 6.42596 6.45093 6.76158 6.82851 7.10658 7.28734 7.60037 7.66895 7.92849 8.29649 8.47467 8.96342 9.08000 9.55564 11.04903 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025597 B = 0.003652 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.630719 B = 7665.170381 C = 7772.700373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.110 4.110 4 H 0.082 0.918 5 C -0.147 4.147 6 C 0.161 3.839 7 H 0.100 0.900 8 C -0.160 4.160 9 N -0.604 5.604 10 C 0.703 3.297 11 O -0.596 6.596 12 N -0.741 5.741 13 C 0.137 3.863 14 C 0.014 3.986 15 C -0.519 4.519 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.068 3.932 24 C -0.194 4.194 25 C -0.185 4.185 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.397 0.603 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.261 0.739 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 16.075 -8.653 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.129 4.129 4 H 0.100 0.900 5 C -0.205 4.205 6 C 0.058 3.942 7 H 0.118 0.882 8 C -0.218 4.218 9 N -0.341 5.341 10 C 0.405 3.595 11 O -0.475 6.475 12 N -0.399 5.399 13 C 0.014 3.986 14 C -0.024 4.024 15 C -0.557 4.557 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.037 4.037 24 C -0.232 4.232 25 C -0.223 4.223 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.236 0.764 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.119 0.881 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.187 15.662 -9.240 21.891 hybrid contribution 0.431 -0.685 0.667 1.048 sum -11.756 14.977 -8.573 20.881 Atomic orbital electron populations 1.21830 0.96149 1.01488 1.01410 1.21525 0.95236 0.96198 1.02691 1.21764 0.95497 0.96796 0.98882 0.90014 1.21908 1.01370 1.00198 0.97031 1.20909 0.93561 0.93127 0.86643 0.88191 1.22152 1.01578 0.95998 1.02080 1.46657 1.58726 1.23898 1.04814 1.16006 0.78675 0.79892 0.84924 1.90862 1.59104 1.68105 1.29465 1.46026 1.55027 1.30833 1.07989 1.21583 0.92209 0.83731 1.01118 1.19308 0.97583 0.96256 0.89217 1.21098 1.30652 1.10433 0.93549 0.92186 1.24994 0.96125 0.97738 0.95450 1.69968 1.45133 1.40283 0.97986 0.86467 0.80193 0.82739 0.78236 1.19571 1.20963 1.20967 1.21553 0.95657 1.00359 0.86112 1.23508 1.03851 0.97806 0.98026 1.23583 0.93632 1.01604 1.03436 0.93043 0.92926 0.92655 0.91882 0.91902 0.92502 0.92589 0.92348 0.92357 0.91465 0.92386 0.76405 0.92843 0.93002 0.96070 0.96080 0.92964 0.86808 0.87358 0.87028 0.88119 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.65 37.15 0.36 -1.05 16 2 C -0.12 -1.36 4.52 -26.73 -0.12 -1.48 16 3 C -0.11 -1.09 1.42 -90.62 -0.13 -1.22 16 4 H 0.08 0.75 5.17 -51.93 -0.27 0.48 16 5 C -0.15 -1.21 8.56 37.16 0.32 -0.89 16 6 C 0.16 1.95 2.22 -67.93 -0.15 1.80 16 7 H 0.10 1.47 6.91 -51.93 -0.36 1.11 16 8 C -0.16 -1.56 8.77 37.16 0.33 -1.23 16 9 N -0.60 -8.41 1.91 -164.25 -0.31 -8.73 16 10 C 0.70 13.06 7.84 -86.91 -0.68 12.37 16 11 O -0.60 -13.20 15.69 5.29 0.08 -13.12 16 12 N -0.74 -14.04 4.96 -65.22 -0.32 -14.37 16 13 C 0.14 3.06 5.62 -4.04 -0.02 3.04 16 14 C 0.01 0.35 5.09 -27.89 -0.14 0.21 16 15 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 16 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 19 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 C 0.07 0.77 4.88 -67.94 -0.33 0.44 16 24 C -0.19 -2.17 8.03 -26.70 -0.21 -2.38 16 25 C -0.18 -1.70 8.91 -26.70 -0.24 -1.93 16 26 H 0.05 0.44 7.75 -51.93 -0.40 0.04 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.45 6.46 -51.93 -0.34 0.12 16 29 H 0.06 0.87 6.82 -51.93 -0.35 0.51 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.40 6.70 -51.93 -0.35 0.06 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.43 6.35 -51.93 -0.33 0.10 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.55 6.54 -51.93 -0.34 0.21 16 36 H 0.06 0.51 7.57 -51.93 -0.39 0.11 16 37 H 0.40 6.75 4.48 -40.82 -0.18 6.57 16 38 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.11 1.45 6.92 -51.93 -0.36 1.09 16 45 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.11 1.05 4.31 -51.93 -0.22 0.83 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -31.55 358.36 -8.97 -40.52 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.09 Total: 4.97 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.44 Total: -5.69 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.10 Total: -48.63 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.55 -8.97 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345815067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.333 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds