Wall clock time and date at job start Tue Mar 31 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46981 * 2 1 4 4 H 1.09004 * 109.46498 * 55.00302 * 3 2 1 5 5 C 1.52993 * 109.47175 * 295.00109 * 3 2 1 6 6 C 1.52999 * 109.46982 * 175.00035 * 3 2 1 7 7 H 1.09001 * 109.47164 * 59.99997 * 6 3 2 8 8 C 1.53004 * 109.46946 * 300.00225 * 6 3 2 9 9 N 1.46501 * 109.47154 * 180.02562 * 6 3 2 10 10 C 1.34770 * 120.00269 * 239.99980 * 9 6 3 11 11 O 1.21595 * 119.99524 * 3.70953 * 10 9 6 12 12 N 1.34777 * 120.00304 * 183.70673 * 10 9 6 13 13 C 1.46501 * 120.00072 * 184.60672 * 12 10 9 14 14 C 1.52995 * 109.47237 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.47322 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99736 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99934 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00201 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99788 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47003 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46902 * 120.00283 * 19 17 15 22 22 H 1.48498 * 109.47012 * 240.00209 * 19 17 15 23 23 C 1.46498 * 119.99849 * 59.99676 * 9 6 3 24 24 C 1.53004 * 117.49832 * 132.03766 * 23 9 6 25 25 C 1.53007 * 117.49933 * 63.38140 * 23 9 6 26 26 H 1.09004 * 109.46945 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47097 * 299.99528 * 1 2 3 28 28 H 1.09003 * 109.47202 * 59.99620 * 1 2 3 29 29 H 1.08993 * 109.47180 * 120.00423 * 2 1 3 30 30 H 1.08998 * 109.47097 * 240.00472 * 2 1 3 31 31 H 1.09000 * 109.47272 * 59.99967 * 5 3 2 32 32 H 1.09004 * 109.46752 * 179.97438 * 5 3 2 33 33 H 1.08995 * 109.47726 * 299.99534 * 5 3 2 34 34 H 1.08996 * 109.47132 * 60.00601 * 8 6 3 35 35 H 1.09008 * 109.46783 * 180.02562 * 8 6 3 36 36 H 1.08991 * 109.47164 * 299.99875 * 8 6 3 37 37 H 0.96990 * 119.99716 * 4.59954 * 12 10 9 38 38 H 1.09008 * 109.47081 * 299.99993 * 13 12 10 39 39 H 1.08997 * 109.47265 * 59.99373 * 13 12 10 40 40 H 1.08999 * 109.46832 * 299.99713 * 14 13 12 41 41 H 1.08997 * 109.47579 * 59.99475 * 14 13 12 42 42 H 0.96998 * 119.99617 * 179.97438 * 18 17 15 43 43 H 1.08996 * 115.55706 * 277.70947 * 23 9 6 44 44 H 1.09004 * 117.49466 * 0.02562 * 24 23 9 45 45 H 1.09002 * 117.49750 * 145.01669 * 24 23 9 46 46 H 1.08998 * 117.50101 * 214.98103 * 25 23 9 47 47 H 1.08998 * 117.49751 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9054 -0.7161 8 6 3.9695 0.7603 1.4331 9 7 4.0531 2.8256 0.1263 10 6 4.9088 3.2383 -0.8295 11 8 5.2231 2.4848 -1.7306 12 7 5.4163 4.4862 -0.7867 13 6 6.2660 4.9692 -1.8780 14 6 6.7064 6.4047 -1.5843 15 6 7.5810 6.9014 -2.7065 16 1 7.8004 6.2577 -3.5455 17 6 8.1002 8.1779 -2.6626 18 7 7.8318 8.9623 -1.6416 19 14 9.1837 8.7939 -4.0540 20 1 9.3314 7.7267 -5.0760 21 1 8.5606 9.9908 -4.6739 22 1 10.5210 9.1536 -3.5179 23 6 3.6111 3.7583 1.1660 24 6 4.6844 4.5880 1.8735 25 6 3.9950 3.4380 2.6121 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 0.5489 2.1253 -1.3968 32 1 1.9982 3.1544 -1.3070 33 1 2.0698 1.5877 -2.1491 34 1 3.6063 -0.2674 1.4330 35 1 5.0559 0.7620 1.5228 36 1 3.5349 1.2992 2.2748 37 1 5.2188 5.0644 -0.0334 38 1 7.1450 4.3303 -1.9642 39 1 5.7060 4.9446 -2.8127 40 1 5.8277 7.0438 -1.4978 41 1 7.2666 6.4289 -0.6496 42 1 8.1974 9.8602 -1.6106 43 1 2.6429 4.2288 0.9949 44 1 5.7194 4.4401 1.5651 45 1 4.4222 5.6042 2.1680 46 1 3.2795 3.6981 3.3922 47 1 4.5761 2.5331 2.7899 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345815068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:16 Heat of formation + Delta-G solvation = -16.636228 kcal Electronic energy + Delta-G solvation = -23346.895959 eV Core-core repulsion = 20144.340442 eV Total energy + Delta-G solvation = -3202.555516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47902 -37.70332 -36.79933 -34.78380 -33.10156 -32.74692 -30.74852 -29.41289 -29.04043 -24.82073 -24.61781 -23.01702 -22.61629 -22.52885 -20.78188 -20.03722 -19.16570 -17.46165 -16.45749 -16.19729 -15.79922 -15.09835 -14.85648 -14.58487 -14.42500 -14.09085 -14.01922 -13.61781 -13.25402 -13.07106 -12.88884 -12.52540 -12.25748 -12.12833 -11.95263 -11.75648 -11.52752 -11.19990 -11.07298 -11.04380 -10.97022 -10.77177 -10.63370 -10.59217 -10.47417 -10.30865 -10.27857 -9.74156 -9.46495 -9.19971 -8.64826 -8.43470 -8.11239 -6.06986 -4.09168 2.89607 3.29996 3.37515 3.43132 3.50543 3.61753 4.25429 4.45678 4.59103 4.71409 4.75819 4.77147 4.81409 5.00711 5.12705 5.28668 5.30207 5.35538 5.41785 5.47667 5.51276 5.56030 5.62624 5.73581 5.78937 5.84574 5.88070 5.93775 5.95502 5.98121 6.05869 6.16514 6.27681 6.34502 6.41250 6.44992 6.75583 6.82708 7.10571 7.28647 7.59951 7.66819 7.92736 8.29516 8.47396 8.96208 9.07925 9.55446 11.04766 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.003496 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.865096 B = 8007.915933 C = 8483.458585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.097 4.097 4 H 0.071 0.929 5 C -0.143 4.143 6 C 0.162 3.838 7 H 0.100 0.900 8 C -0.173 4.173 9 N -0.603 5.603 10 C 0.703 3.297 11 O -0.597 6.597 12 N -0.741 5.741 13 C 0.137 3.863 14 C 0.014 3.986 15 C -0.518 4.518 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.068 3.932 24 C -0.194 4.194 25 C -0.181 4.181 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.397 0.603 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.261 0.739 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.951 -14.557 10.196 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.117 4.117 4 H 0.089 0.911 5 C -0.200 4.200 6 C 0.058 3.942 7 H 0.118 0.882 8 C -0.231 4.231 9 N -0.340 5.340 10 C 0.405 3.595 11 O -0.476 6.476 12 N -0.398 5.398 13 C 0.014 3.986 14 C -0.024 4.024 15 C -0.557 4.557 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.037 4.037 24 C -0.232 4.232 25 C -0.219 4.219 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.236 0.764 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.119 0.881 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.659 -14.900 9.545 22.354 hybrid contribution 0.502 0.862 -0.281 1.036 sum -13.157 -14.038 9.264 21.354 Atomic orbital electron populations 1.21805 0.95922 1.01309 1.01877 1.21622 0.95840 0.96104 1.02226 1.21474 0.94985 0.96310 0.98893 0.91089 1.21786 1.00348 1.00998 0.96902 1.20890 0.93147 0.81081 0.99077 0.88182 1.22501 1.01723 1.00684 0.98218 1.46629 1.48432 1.11027 1.27946 1.16007 0.78914 0.82854 0.81730 1.90864 1.64996 1.55004 1.36689 1.45997 1.53532 1.13552 1.26733 1.21582 0.92030 0.97527 0.87473 1.19307 0.96701 0.88522 0.97825 1.21099 1.30036 0.98770 1.05815 0.92188 1.24994 0.96506 0.96767 0.96059 1.69967 1.45083 1.08287 1.30032 0.86466 0.80171 0.78799 0.82196 1.19569 1.20964 1.20968 1.21557 0.98280 0.96648 0.87257 1.23516 0.98713 0.97375 1.03602 1.23526 1.03838 1.00332 0.94195 0.93004 0.92913 0.92489 0.91605 0.91840 0.92932 0.92639 0.92608 0.91547 0.92505 0.91241 0.76448 0.92851 0.92999 0.96070 0.96084 0.92962 0.86849 0.87361 0.87045 0.88066 0.87501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.12 -1.00 5.19 -26.73 -0.14 -1.14 16 3 C -0.10 -0.97 1.84 -90.62 -0.17 -1.14 16 4 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 5 C -0.14 -1.66 8.79 37.15 0.33 -1.33 16 6 C 0.16 1.95 2.23 -67.93 -0.15 1.80 16 7 H 0.10 1.47 6.91 -51.93 -0.36 1.11 16 8 C -0.17 -1.67 7.70 37.16 0.29 -1.39 16 9 N -0.60 -8.40 1.94 -164.23 -0.32 -8.72 16 10 C 0.70 13.07 8.12 -86.92 -0.71 12.37 16 11 O -0.60 -13.22 15.68 5.28 0.08 -13.14 16 12 N -0.74 -14.04 4.97 -65.23 -0.32 -14.36 16 13 C 0.14 3.07 5.62 -4.04 -0.02 3.04 16 14 C 0.01 0.35 5.09 -27.89 -0.14 0.21 16 15 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 16 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 19 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.07 0.76 5.03 -67.93 -0.34 0.42 16 24 C -0.19 -2.16 8.03 -26.69 -0.21 -2.38 16 25 C -0.18 -1.64 8.66 -26.69 -0.23 -1.87 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 29 H 0.07 0.49 6.17 -51.93 -0.32 0.17 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.52 6.56 -51.93 -0.34 0.18 16 32 H 0.05 0.75 7.61 -51.93 -0.39 0.35 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.54 6.32 -51.93 -0.33 0.21 16 35 H 0.06 0.62 8.08 -51.92 -0.42 0.20 16 36 H 0.07 0.59 5.25 -51.93 -0.27 0.32 16 37 H 0.40 6.75 4.54 -40.82 -0.19 6.56 16 38 H 0.05 1.24 8.14 -51.92 -0.42 0.82 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.11 1.44 6.98 -51.93 -0.36 1.08 16 45 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.11 0.99 5.80 -51.93 -0.30 0.69 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -31.58 361.33 -9.17 -40.75 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.22 Total: 4.54 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.55 Total: -5.53 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.09 Total: -48.63 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.58 -9.17 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345815068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.111 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds