Wall clock time and date at job start Tue Mar 31 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47454 * 2 1 4 4 H 1.09001 * 109.46502 * 305.00019 * 3 2 1 5 5 C 1.53001 * 109.46948 * 64.99497 * 3 2 1 6 6 C 1.52998 * 109.47484 * 184.99693 * 3 2 1 7 7 H 1.08996 * 109.47238 * 300.00574 * 6 3 2 8 8 C 1.53004 * 109.46684 * 59.99810 * 6 3 2 9 9 N 1.46492 * 109.47306 * 179.97438 * 6 3 2 10 10 C 1.34771 * 119.99799 * 125.16915 * 9 6 3 11 11 O 1.21591 * 120.00179 * 183.86269 * 10 9 6 12 12 N 1.34779 * 120.00321 * 3.86336 * 10 9 6 13 13 C 1.46498 * 120.00135 * 174.99702 * 12 10 9 14 14 C 1.53001 * 109.46906 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.46933 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00243 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99869 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00055 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99845 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47288 * 90.00319 * 19 17 15 21 21 H 1.48505 * 109.46944 * 209.99934 * 19 17 15 22 22 H 1.48503 * 109.47308 * 329.99890 * 19 17 15 23 23 C 1.46496 * 120.00224 * 305.17269 * 9 6 3 24 24 C 1.53001 * 117.49899 * 231.50369 * 23 9 6 25 25 C 1.53002 * 60.00083 * 252.50842 * 24 23 9 26 26 H 1.09007 * 109.47192 * 59.99907 * 1 2 3 27 27 H 1.09003 * 109.47773 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47352 * 299.99949 * 1 2 3 29 29 H 1.08997 * 109.47092 * 239.99566 * 2 1 3 30 30 H 1.08998 * 109.46932 * 120.00174 * 2 1 3 31 31 H 1.08998 * 109.47729 * 300.00092 * 5 3 2 32 32 H 1.09006 * 109.47018 * 60.00395 * 5 3 2 33 33 H 1.09003 * 109.46796 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47696 * 299.99897 * 8 6 3 35 35 H 1.09006 * 109.47155 * 60.00207 * 8 6 3 36 36 H 1.09003 * 109.47142 * 179.97438 * 8 6 3 37 37 H 0.96997 * 119.99512 * 355.00085 * 12 10 9 38 38 H 1.08997 * 109.47478 * 300.00608 * 13 12 10 39 39 H 1.09000 * 109.46777 * 60.00631 * 13 12 10 40 40 H 1.08997 * 109.47698 * 300.00657 * 14 13 12 41 41 H 1.09000 * 109.46738 * 60.00790 * 14 13 12 42 42 H 0.97000 * 120.00143 * 179.97438 * 18 17 15 43 43 H 1.09000 * 115.56481 * 17.18656 * 23 9 6 44 44 H 1.09007 * 117.50129 * 145.01923 * 24 23 9 45 45 H 1.08995 * 117.49721 * 359.97438 * 24 23 9 46 46 H 1.08996 * 117.49820 * 107.48963 * 25 24 23 47 47 H 1.09003 * 117.49702 * 252.51179 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5649 1.4443 -0.1256 7 1 3.9994 0.9052 0.7161 8 6 3.9696 0.7602 -1.4330 9 7 4.0531 2.8254 -0.1263 10 6 4.9875 3.2102 0.7655 11 8 5.3418 4.3724 0.8117 12 7 5.5293 2.3067 1.6061 13 6 6.6217 2.7002 2.4995 14 6 7.0501 1.4970 3.3419 15 6 8.1734 1.9020 4.2614 16 1 8.5443 2.9162 4.2467 17 6 8.7275 0.9777 5.1214 18 7 9.7074 1.3312 5.9242 19 14 8.0864 -0.7766 5.1464 20 1 8.8492 -1.5964 4.1709 21 1 8.2533 -1.3453 6.5081 22 1 6.6473 -0.7830 4.7802 23 6 3.5258 3.7884 -1.0961 24 6 4.5374 4.5810 -1.9263 25 6 3.7524 5.2745 -0.8110 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3635 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 0.5489 2.1253 1.3969 32 1 2.0698 1.5875 2.1492 33 1 1.9990 3.1541 1.3075 34 1 3.6063 -0.2675 -1.4330 35 1 3.5350 1.2992 -2.2749 36 1 5.0559 0.7618 -1.5228 37 1 5.1960 1.3959 1.6196 38 1 7.4676 3.0494 1.9073 39 1 6.2829 3.5012 3.1566 40 1 6.2041 1.1483 3.9341 41 1 7.3887 0.6958 2.6851 42 1 10.0971 0.6810 6.5295 43 1 2.5903 3.5056 -1.5788 44 1 4.2675 4.8196 -2.9551 45 1 5.5953 4.3863 -1.7506 46 1 4.2940 5.5356 0.0981 47 1 2.9660 5.9692 -1.1061 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345815069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:19 Heat of formation + Delta-G solvation = -4.262243 kcal Electronic energy + Delta-G solvation = -23517.727146 eV Core-core repulsion = 20315.708206 eV Total energy + Delta-G solvation = -3202.018940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.63466 -37.82243 -36.63438 -34.70921 -33.83895 -32.56370 -30.49821 -29.57841 -29.50203 -25.06665 -24.67484 -23.02050 -22.69563 -22.19369 -20.74739 -20.33088 -19.12936 -17.64089 -16.87672 -16.21511 -15.72638 -15.17698 -15.00713 -14.55909 -14.20805 -14.05023 -13.87794 -13.72163 -13.46210 -13.36080 -13.08362 -12.61019 -12.55588 -12.26658 -12.03813 -11.81862 -11.62036 -11.44304 -11.39911 -11.22015 -11.10653 -10.80135 -10.75338 -10.58064 -10.37623 -10.20626 -10.13173 -9.94444 -9.36479 -9.14176 -8.65078 -8.57583 -8.11829 -6.10255 -4.10074 2.76813 3.25124 3.32719 3.33972 3.39720 4.02422 4.12033 4.38040 4.38180 4.63264 4.69752 4.90267 4.94230 5.04666 5.09566 5.17712 5.22720 5.26083 5.30326 5.37530 5.43360 5.51084 5.62948 5.72201 5.74967 5.77765 5.82366 5.83881 5.91394 6.04145 6.07591 6.13602 6.18329 6.24160 6.26183 6.50170 6.59458 6.75181 7.01261 7.08435 7.25355 7.28320 7.68700 8.25424 8.46302 8.93112 8.96024 9.49993 11.02869 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015395 B = 0.004671 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.385591 B = 5993.585751 C = 7230.694759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.099 4.099 4 H 0.074 0.926 5 C -0.148 4.148 6 C 0.142 3.858 7 H 0.086 0.914 8 C -0.164 4.164 9 N -0.598 5.598 10 C 0.705 3.295 11 O -0.584 6.584 12 N -0.743 5.743 13 C 0.148 3.852 14 C -0.021 4.021 15 C -0.521 4.521 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.899 5.899 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.267 1.267 23 C 0.092 3.908 24 C -0.192 4.192 25 C -0.197 4.197 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.389 0.611 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.021 0.979 41 H 0.016 0.984 42 H 0.264 0.736 43 H 0.122 0.878 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.150 0.850 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.029 -2.524 -16.043 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.118 4.118 4 H 0.092 0.908 5 C -0.206 4.206 6 C 0.038 3.962 7 H 0.104 0.896 8 C -0.222 4.222 9 N -0.333 5.333 10 C 0.407 3.593 11 O -0.463 6.463 12 N -0.399 5.399 13 C 0.025 3.975 14 C -0.059 4.059 15 C -0.560 4.560 16 H 0.094 0.906 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.014 4.014 24 C -0.231 4.231 25 C -0.235 4.235 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.225 0.775 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.139 0.861 44 H 0.107 0.893 45 H 0.112 0.888 46 H 0.167 0.833 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.593 -1.758 -15.824 24.478 hybrid contribution -0.370 -1.481 0.038 1.527 sum -18.963 -3.239 -15.786 24.885 Atomic orbital electron populations 1.21800 0.95743 1.01503 1.01893 1.21650 0.96091 0.95809 1.02467 1.21511 0.94340 0.96680 0.99262 0.90771 1.21848 1.01009 1.01193 0.96510 1.21129 0.94122 0.82077 0.98850 0.89568 1.22243 1.02231 1.00555 0.97202 1.46533 1.42335 1.09912 1.34494 1.16015 0.79096 0.85054 0.79112 1.90657 1.65512 1.16363 1.73798 1.45814 1.39600 1.12823 1.41617 1.21367 0.86447 0.99021 0.90660 1.19787 0.97377 0.93558 0.95161 1.20915 1.16369 0.99228 1.19455 0.90583 1.24990 0.94551 0.98719 0.94967 1.69902 1.25072 1.35106 1.23612 0.86766 0.79860 0.85109 0.77420 1.20234 1.21269 1.19125 1.21247 0.97417 0.87880 0.94812 1.23237 0.98682 1.05407 0.95769 1.24138 1.02783 0.92997 1.03540 0.92903 0.92849 0.92434 0.91410 0.91660 0.92523 0.92676 0.92154 0.91247 0.92073 0.92065 0.77504 0.92272 0.92075 0.96121 0.96587 0.92566 0.86066 0.89297 0.88788 0.83265 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16 2 C -0.12 -0.89 5.19 -26.73 -0.14 -1.03 16 3 C -0.10 -0.84 1.75 -90.62 -0.16 -1.00 16 4 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 5 C -0.15 -1.46 8.79 37.16 0.33 -1.14 16 6 C 0.14 1.44 2.20 -67.93 -0.15 1.29 16 7 H 0.09 0.92 5.50 -51.93 -0.29 0.63 16 8 C -0.16 -1.44 8.92 37.16 0.33 -1.11 16 9 N -0.60 -7.69 1.96 -164.24 -0.32 -8.01 16 10 C 0.70 11.96 8.04 -86.92 -0.70 11.27 16 11 O -0.58 -11.71 12.23 5.29 0.06 -11.65 16 12 N -0.74 -12.72 5.46 -65.23 -0.36 -13.07 16 13 C 0.15 3.07 5.62 -4.04 -0.02 3.05 16 14 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 15 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 16 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 19 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 23 C 0.09 1.07 5.65 -67.93 -0.38 0.69 16 24 C -0.19 -2.38 9.90 -26.73 -0.26 -2.64 16 25 C -0.20 -2.60 9.64 -26.73 -0.26 -2.86 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 29 H 0.07 0.44 6.17 -51.93 -0.32 0.12 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.71 7.60 -51.93 -0.39 0.32 16 34 H 0.07 0.50 6.32 -51.93 -0.33 0.17 16 35 H 0.06 0.50 7.80 -51.93 -0.41 0.10 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.39 5.78 5.87 -40.82 -0.24 5.54 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 41 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.12 1.13 6.71 -51.93 -0.35 0.78 16 44 H 0.09 0.90 8.14 -51.92 -0.42 0.47 16 45 H 0.09 1.41 7.82 -51.93 -0.41 1.00 16 46 H 0.15 2.53 4.95 -53.45 -0.26 2.26 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -31.14 359.41 -8.88 -40.02 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.18 Total: 5.37 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.60 Total: -7.82 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.10 Total: -47.72 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.06 Total: -11.65 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.14 -8.88 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345815069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.755 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds