Wall clock time and date at job start Tue Mar 31 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47662 * 2 1 4 4 H 1.09007 * 109.47003 * 55.00246 * 3 2 1 5 5 C 1.52998 * 109.47135 * 295.00363 * 3 2 1 6 6 C 1.53009 * 109.47063 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47130 * 59.99972 * 6 5 3 8 8 C 1.52998 * 109.46844 * 300.00158 * 7 6 5 9 9 C 1.53001 * 109.47494 * 60.00200 * 8 7 6 10 10 H 1.08998 * 109.47418 * 59.99767 * 9 8 7 11 11 N 1.46497 * 109.47063 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00526 * 59.99902 * 11 9 8 13 13 C 1.34781 * 120.00103 * 239.99900 * 11 9 8 14 14 O 1.21593 * 119.99684 * 359.97438 * 13 11 9 15 15 N 1.34770 * 120.00528 * 180.02562 * 13 11 9 16 16 C 1.46493 * 120.00393 * 179.97438 * 15 13 11 17 17 C 1.52996 * 109.47400 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47159 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48501 * 109.47188 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.47085 * 210.00372 * 22 20 18 25 25 H 1.48498 * 109.47634 * 330.00608 * 22 20 18 26 26 H 1.09006 * 109.46853 * 300.00072 * 1 2 3 27 27 H 1.09005 * 109.47117 * 59.99395 * 1 2 3 28 28 H 1.08995 * 109.47515 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46853 * 239.99928 * 2 1 3 30 30 H 1.09005 * 109.47117 * 120.00605 * 2 1 3 31 31 H 1.08996 * 109.47449 * 60.00060 * 5 3 2 32 32 H 1.08998 * 109.46974 * 299.99275 * 5 3 2 33 33 H 1.08998 * 109.46853 * 299.99618 * 6 5 3 34 34 H 1.09003 * 109.47102 * 179.97438 * 6 5 3 35 35 H 1.08995 * 109.47152 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47086 * 59.99790 * 7 6 5 37 37 H 1.08998 * 109.46979 * 299.99698 * 8 7 6 38 38 H 1.09004 * 109.46971 * 179.97438 * 8 7 6 39 39 H 1.09003 * 109.46443 * 269.99968 * 12 11 9 40 40 H 1.08998 * 109.46962 * 29.99380 * 12 11 9 41 41 H 1.08994 * 109.47024 * 150.00172 * 12 11 9 42 42 H 0.97000 * 119.99567 * 359.97438 * 15 13 11 43 43 H 1.09004 * 109.46794 * 59.99777 * 16 15 13 44 44 H 1.09000 * 109.47559 * 300.00254 * 16 15 13 45 45 H 1.09004 * 109.47066 * 60.00265 * 17 16 15 46 46 H 1.08994 * 109.47405 * 300.00096 * 17 16 15 47 47 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 2.1449 3.5692 -1.3070 7 6 3.6698 3.5715 -1.1811 8 6 4.0744 2.8873 0.1262 9 6 3.5649 1.4446 0.1259 10 1 3.9998 0.9058 -0.7158 11 7 3.9519 0.7898 1.3780 12 6 3.4896 1.3282 2.6597 13 6 4.7334 -0.3080 1.3508 14 8 5.1167 -0.7551 0.2871 15 7 5.0890 -0.9107 2.5025 16 6 5.9379 -2.1043 2.4730 17 6 6.1909 -2.5858 3.9030 18 6 7.0648 -3.8133 3.8725 19 1 7.4059 -4.2100 2.9277 20 6 7.4338 -4.4262 5.0512 21 7 7.0187 -3.9429 6.2017 22 14 8.5232 -5.9431 5.0137 23 1 9.9486 -5.5305 5.0717 24 1 8.2101 -6.8064 6.1808 25 1 8.2773 -6.6985 3.7591 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5140 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 0.5490 2.1253 -1.3968 32 1 2.0699 1.5875 -2.1491 33 1 1.7100 4.1080 -0.4652 34 1 1.8570 4.0565 -2.2386 35 1 4.0328 4.5992 -1.1813 36 1 4.1046 3.0327 -2.0228 37 1 3.6396 3.4261 0.9680 38 1 5.1608 2.8885 0.2158 39 1 4.2117 2.0560 3.0297 40 1 2.5229 1.8128 2.5227 41 1 3.3903 0.5163 3.3801 42 1 4.7829 -0.5542 3.3511 43 1 6.8887 -1.8622 1.9979 44 1 5.4391 -2.8911 1.9071 45 1 5.2404 -2.8278 4.3784 46 1 6.6900 -1.7990 4.4684 47 1 7.2781 -4.3743 7.0309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345817404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:57 Heat of formation + Delta-G solvation = -80.960062 kcal Electronic energy + Delta-G solvation = -23184.532405 eV Core-core repulsion = 19979.187598 eV Total energy + Delta-G solvation = -3205.344807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.59452 -39.63454 -36.60707 -36.04623 -34.85124 -34.76857 -31.80053 -30.50973 -29.68319 -27.78882 -26.58504 -24.81026 -23.65804 -22.71595 -21.59325 -21.16846 -20.35204 -18.99587 -18.50097 -17.53123 -16.88784 -16.50354 -16.11294 -15.79360 -15.51541 -15.29081 -14.97529 -14.75433 -14.37724 -14.29230 -14.18548 -13.99777 -13.68393 -13.42912 -13.32707 -13.03126 -12.94324 -12.52963 -12.49373 -12.35925 -12.25181 -12.13772 -11.95916 -11.69002 -11.65813 -11.48979 -11.34795 -11.19925 -11.07410 -10.93902 -10.61008 -10.12988 -9.40028 -8.24704 -6.35062 1.41270 1.42040 1.53421 1.70109 2.15660 2.40476 3.07439 3.09947 3.61161 3.80565 3.91972 4.15629 4.17277 4.25881 4.34349 4.41930 4.46261 4.49156 4.51047 4.53672 4.55609 4.66387 4.75019 4.83156 4.83972 4.84993 4.91272 5.03439 5.11900 5.17098 5.20177 5.26113 5.30597 5.32067 5.34558 5.37569 5.50252 5.51971 5.57384 5.59024 5.65804 5.79270 6.00489 6.16384 6.77531 7.01384 7.34129 7.58734 8.87319 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030017 B = 0.003184 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.569640 B = 8791.276591 C = 9056.555462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.090 0.910 5 C -0.110 4.110 6 C -0.114 4.114 7 C -0.115 4.115 8 C -0.121 4.121 9 C 0.158 3.842 10 H 0.064 0.936 11 N -0.621 5.621 12 C 0.071 3.929 13 C 0.696 3.304 14 O -0.641 6.641 15 N -0.735 5.735 16 C 0.161 3.839 17 C 0.026 3.974 18 C -0.547 4.547 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.267 1.267 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.405 0.595 43 H 0.041 0.959 44 H 0.040 0.960 45 H 0.008 0.992 46 H 0.008 0.992 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.365 18.132 -10.898 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.108 0.892 5 C -0.148 4.148 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.159 4.159 9 C 0.055 3.945 10 H 0.083 0.917 11 N -0.357 5.357 12 C -0.071 4.071 13 C 0.398 3.602 14 O -0.523 6.523 15 N -0.391 5.391 16 C 0.036 3.964 17 C -0.011 4.011 18 C -0.586 4.586 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.565 5.565 22 Si 0.790 3.210 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.191 1.191 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.242 0.758 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.080 17.774 -11.449 25.402 hybrid contribution 0.807 -1.058 0.686 1.497 sum -13.273 16.716 -10.763 23.905 Atomic orbital electron populations 1.21760 0.94095 1.01580 1.02700 1.21456 0.96993 0.96608 1.00344 1.21473 0.93145 0.95837 0.99970 0.89199 1.21609 1.01680 0.95863 0.95682 1.21543 0.94575 0.96080 1.02972 1.21504 0.96961 1.00750 0.96101 1.21844 1.00147 0.94078 0.99837 1.21077 0.95279 0.93125 0.85063 0.91730 1.47090 1.52133 1.27698 1.08750 1.21931 1.01690 0.99771 0.83720 1.16153 0.79436 0.80800 0.83834 1.90829 1.62320 1.68306 1.30869 1.45378 1.54912 1.31140 1.07655 1.21050 0.91985 0.84582 0.98736 1.19104 0.96088 0.95490 0.90439 1.21453 1.31647 1.12339 0.93134 0.92412 1.25869 0.97515 1.00757 0.94959 1.70059 1.46282 1.42132 0.98050 0.85435 0.78857 0.78739 0.77963 1.19719 1.20368 1.19133 0.91809 0.91237 0.93530 0.94268 0.94342 0.89886 0.93039 0.90641 0.90680 0.90340 0.92976 0.89890 0.93486 0.91494 0.88218 0.91507 0.75838 0.94095 0.94145 0.97358 0.97355 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.67 71.98 0.70 -1.71 16 2 C -0.12 -2.59 5.32 30.59 0.16 -2.43 16 3 C -0.08 -1.53 1.56 -10.80 -0.02 -1.55 16 4 H 0.09 1.32 6.66 -2.38 -0.02 1.30 16 5 C -0.11 -1.59 4.96 30.60 0.15 -1.43 16 6 C -0.11 -1.32 5.92 30.60 0.18 -1.13 16 7 C -0.12 -1.69 5.92 30.59 0.18 -1.50 16 8 C -0.12 -2.23 5.20 30.59 0.16 -2.07 16 9 C 0.16 3.76 1.97 44.99 0.09 3.85 16 10 H 0.06 2.03 6.90 -2.39 -0.02 2.01 16 11 N -0.62 -16.84 1.91 -840.61 -1.61 -18.44 16 12 C 0.07 1.34 9.26 127.77 1.18 2.53 16 13 C 0.70 26.24 8.25 179.06 1.48 27.72 16 14 O -0.64 -29.64 15.67 -4.01 -0.06 -29.70 16 15 N -0.73 -27.97 5.42 -478.55 -2.59 -30.56 16 16 C 0.16 7.39 5.61 86.38 0.48 7.88 16 17 C 0.03 1.37 5.09 29.85 0.15 1.52 16 18 C -0.55 -31.30 9.11 25.60 0.23 -31.07 16 19 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 20 C 0.01 0.44 5.46 84.66 0.46 0.91 16 21 N -0.93 -54.73 13.29 21.45 0.28 -54.45 16 22 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H 0.06 0.91 8.14 -2.38 -0.02 0.90 16 27 H 0.07 0.95 6.57 -2.38 -0.02 0.93 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.04 1.04 7.43 -2.38 -0.02 1.03 16 31 H 0.08 0.96 6.56 -2.39 -0.02 0.94 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 1.22 7.67 -2.39 -0.02 1.20 16 38 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 1.33 6.42 -2.39 -0.02 1.32 16 41 H 0.07 1.31 6.36 -2.39 -0.02 1.29 16 42 H 0.40 13.29 6.20 -92.71 -0.58 12.72 16 43 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 45 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 46 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -70.03 361.26 3.99 -66.04 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.35 Total: 19.39 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.60 Total: 1.49 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -3.92 Total: -103.45 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.06 Total: -29.70 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -70.03 3.99 -66.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345817404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.919 kcal (2) G-P(sol) polarization free energy of solvation -70.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds