Wall clock time and date at job start Tue Mar 31 2020 05:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46919 * 2 1 4 4 H 1.08994 * 109.47006 * 52.31794 * 3 2 1 5 5 C 1.52997 * 109.47119 * 292.31494 * 3 2 1 6 6 C 1.53002 * 109.46792 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47264 * 60.00324 * 6 5 3 8 8 C 1.53002 * 109.46708 * 299.99793 * 7 6 5 9 9 C 1.52999 * 109.46634 * 172.31672 * 3 2 1 10 10 H 1.09004 * 109.47505 * 299.99799 * 9 3 2 11 11 N 1.46497 * 109.47391 * 60.00018 * 9 3 2 12 12 C 1.46496 * 120.00094 * 110.56807 * 11 9 3 13 13 C 1.34773 * 120.00240 * 290.56851 * 11 9 3 14 14 O 1.21597 * 119.99791 * 352.71816 * 13 11 9 15 15 N 1.34771 * 120.00469 * 172.72187 * 13 11 9 16 16 C 1.46508 * 120.00320 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.46952 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.46871 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99997 * 359.97438 * 18 17 16 20 20 C 1.37870 * 119.99852 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99729 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00170 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46816 * 269.99507 * 22 20 18 24 24 H 1.48495 * 109.47155 * 29.99615 * 22 20 18 25 25 H 1.48500 * 109.47115 * 149.99904 * 22 20 18 26 26 H 1.08999 * 109.46937 * 300.00211 * 1 2 3 27 27 H 1.09003 * 109.47050 * 59.99339 * 1 2 3 28 28 H 1.08996 * 109.47322 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46937 * 239.99789 * 2 1 3 30 30 H 1.09000 * 109.47130 * 119.99899 * 2 1 3 31 31 H 1.09004 * 109.47395 * 300.00050 * 5 3 2 32 32 H 1.08994 * 109.47246 * 60.00420 * 5 3 2 33 33 H 1.09001 * 109.47290 * 179.97438 * 6 5 3 34 34 H 1.08993 * 109.47537 * 300.00070 * 6 5 3 35 35 H 1.09003 * 109.47061 * 59.99415 * 7 6 5 36 36 H 1.08996 * 109.47329 * 179.97438 * 7 6 5 37 37 H 1.08993 * 109.47083 * 299.99635 * 8 7 6 38 38 H 1.09010 * 109.46696 * 179.97438 * 8 7 6 39 39 H 1.09009 * 109.46938 * 269.82904 * 12 11 9 40 40 H 1.09002 * 109.47289 * 29.82731 * 12 11 9 41 41 H 1.09002 * 109.47552 * 149.83331 * 12 11 9 42 42 H 0.97002 * 119.99915 * 359.97438 * 15 13 11 43 43 H 1.08995 * 109.47007 * 59.99661 * 16 15 13 44 44 H 1.09003 * 109.46837 * 300.00043 * 16 15 13 45 45 H 1.08995 * 109.47591 * 59.99958 * 17 16 15 46 46 H 1.09003 * 109.47335 * 299.99677 * 17 16 15 47 47 H 0.97006 * 119.99963 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5688 1.9944 0.8133 5 6 1.6936 2.1059 -1.3344 6 6 2.2041 3.5482 -1.3346 7 6 3.7220 3.5520 -1.1420 8 6 4.0684 2.8886 0.1924 9 6 3.5578 1.4468 0.1929 10 1 3.8046 0.9741 1.1436 11 7 4.1911 0.7049 -0.9002 12 6 4.9864 1.4163 -1.9039 13 6 4.0420 -0.6320 -0.9824 14 8 3.4960 -1.2394 -0.0816 15 7 4.4982 -1.2958 -2.0630 16 6 4.3357 -2.7491 -2.1525 17 6 4.9359 -3.2492 -3.4680 18 6 4.7681 -4.7440 -3.5604 19 1 4.2824 -5.2834 -2.7607 20 6 5.2347 -5.4230 -4.6659 21 7 5.0888 -6.7275 -4.7463 22 14 6.0755 -4.4902 -6.0488 23 1 5.0615 -4.0648 -7.0469 24 1 6.7578 -3.2932 -5.4952 25 1 7.0754 -5.3714 -6.7038 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.1648 1.5540 -2.1478 32 1 0.6124 2.1029 -1.4718 33 1 1.9578 4.0208 -2.2855 34 1 1.7334 4.1004 -0.5213 35 1 4.1928 2.9998 -1.9554 36 1 4.0858 4.5795 -1.1426 37 1 3.5976 3.4408 1.0057 38 1 5.1498 2.8909 0.3294 39 1 4.3425 1.7193 -2.7297 40 1 5.4367 2.2998 -1.4513 41 1 5.7716 0.7592 -2.2778 42 1 4.9335 -0.8113 -2.7817 43 1 3.2753 -2.9988 -2.1183 44 1 4.8480 -3.2242 -1.3159 45 1 5.9963 -2.9995 -3.5018 46 1 4.4239 -2.7741 -4.3049 47 1 5.4167 -7.2053 -5.5243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345817406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:01 Heat of formation + Delta-G solvation = -14.551685 kcal Electronic energy + Delta-G solvation = -23968.289700 eV Core-core repulsion = 20765.824576 eV Total energy + Delta-G solvation = -3202.465124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03416 -38.34433 -35.26880 -34.74403 -33.50181 -32.70983 -30.71068 -29.55593 -29.44406 -26.48561 -24.78827 -23.88287 -22.31281 -20.96932 -20.69675 -20.34249 -19.04763 -17.62734 -16.88930 -16.51446 -15.75955 -15.00122 -14.87211 -14.35316 -14.24142 -14.13993 -13.87003 -13.61599 -13.49492 -13.26220 -12.81876 -12.60735 -12.57013 -12.22728 -12.17497 -12.02258 -11.48366 -11.44597 -11.38070 -11.13776 -10.93222 -10.57483 -10.39144 -10.30814 -10.14348 -10.01919 -9.93762 -9.91143 -9.45169 -9.27701 -8.60872 -8.45451 -8.20834 -6.09257 -4.08978 2.90955 3.26022 3.33527 3.34860 3.56408 4.27137 4.39127 4.54853 4.58282 4.65625 4.94761 5.02098 5.06660 5.23809 5.25760 5.27071 5.28148 5.32948 5.44826 5.50201 5.54087 5.59114 5.68475 5.78593 5.82894 5.88772 5.98022 6.03440 6.09396 6.13579 6.19545 6.24375 6.28717 6.37508 6.55110 6.61546 6.72579 6.78358 6.97017 7.10820 7.27596 7.32275 7.70040 8.30879 8.48007 8.95122 8.99788 9.51115 11.03896 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022957 B = 0.004118 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.383052 B = 6798.576310 C = 7328.787947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.096 4.096 4 H 0.070 0.930 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.162 4.162 8 C -0.124 4.124 9 C 0.173 3.827 10 H 0.077 0.923 11 N -0.629 5.629 12 C 0.068 3.932 13 C 0.699 3.301 14 O -0.581 6.581 15 N -0.743 5.743 16 C 0.149 3.851 17 C -0.021 4.021 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.267 1.267 25 H -0.287 1.287 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.390 0.610 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.020 0.980 46 H 0.016 0.984 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.001 23.921 6.902 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.115 4.115 4 H 0.088 0.912 5 C -0.150 4.150 6 C -0.154 4.154 7 C -0.199 4.199 8 C -0.162 4.162 9 C 0.069 3.931 10 H 0.095 0.905 11 N -0.368 5.368 12 C -0.075 4.075 13 C 0.401 3.599 14 O -0.459 6.459 15 N -0.399 5.399 16 C 0.026 3.974 17 C -0.059 4.059 18 C -0.559 4.559 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.538 5.538 22 Si 0.709 3.291 23 H -0.203 1.203 24 H -0.191 1.191 25 H -0.213 1.213 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.224 0.776 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.362 23.273 7.458 24.669 hybrid contribution 0.612 0.652 -1.229 1.520 sum -2.750 23.925 6.229 24.875 Atomic orbital electron populations 1.21923 0.97714 1.01116 1.00492 1.22011 0.93504 0.94714 1.04736 1.21617 0.94841 0.97476 0.97587 0.91151 1.21576 1.00445 0.95137 0.97850 1.21502 0.95660 0.97022 1.01172 1.22547 0.97169 1.01018 0.99132 1.21773 1.01033 0.94788 0.98596 1.20825 0.91845 0.90703 0.89740 0.90499 1.46984 1.55103 1.05338 1.29345 1.22184 0.95079 0.98238 0.91998 1.15840 0.79665 0.81035 0.83389 1.90935 1.48287 1.67105 1.39555 1.45698 1.63509 1.09996 1.20647 1.21337 1.00843 0.75475 0.99748 1.19786 0.96024 0.97871 0.92219 1.20924 1.39163 0.89709 1.06131 0.90606 1.24993 0.95425 0.94748 0.98096 1.69907 1.46801 1.07131 1.29913 0.86756 0.79765 0.80113 0.82453 1.20257 1.19132 1.21302 0.93721 0.93502 0.93098 0.90968 0.90201 0.91933 0.92176 0.92399 0.92504 0.88236 0.92327 0.90618 0.91407 0.92429 0.89584 0.91936 0.77626 0.92274 0.92262 0.96154 0.96586 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.71 37.16 0.36 -1.58 16 2 C -0.11 -1.60 3.53 -26.73 -0.09 -1.70 16 3 C -0.10 -1.08 1.99 -90.62 -0.18 -1.26 16 4 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 5 C -0.11 -1.16 4.84 -26.73 -0.13 -1.29 16 6 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 7 C -0.16 -1.20 5.12 -26.73 -0.14 -1.33 16 8 C -0.12 -1.00 4.94 -26.75 -0.13 -1.13 16 9 C 0.17 1.92 2.60 -67.96 -0.18 1.75 16 10 H 0.08 0.98 7.97 -51.93 -0.41 0.57 16 11 N -0.63 -7.78 2.23 -182.48 -0.41 -8.18 16 12 C 0.07 0.62 7.68 59.84 0.46 1.08 16 13 C 0.70 11.57 6.50 -86.93 -0.56 11.00 16 14 O -0.58 -11.42 11.92 5.28 0.06 -11.36 16 15 N -0.74 -12.54 5.39 -65.22 -0.35 -12.89 16 16 C 0.15 3.08 5.61 -4.04 -0.02 3.06 16 17 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 18 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 19 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 22 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.55 6.66 -51.93 -0.35 0.20 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.24 5.37 -51.93 -0.28 0.96 16 30 H 0.08 1.31 6.74 -51.93 -0.35 0.96 16 31 H 0.06 0.74 6.97 -51.93 -0.36 0.37 16 32 H 0.06 0.62 6.66 -51.93 -0.35 0.27 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.73 3.06 -55.38 -0.17 0.56 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.51 7.33 -51.92 -0.38 0.13 16 39 H 0.06 0.48 6.43 -51.92 -0.33 0.15 16 40 H 0.09 0.62 4.75 -51.93 -0.25 0.37 16 41 H 0.06 0.57 6.70 -51.93 -0.35 0.22 16 42 H 0.39 5.64 6.41 -40.82 -0.26 5.37 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 46 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -31.41 338.84 -8.80 -40.21 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.99 Total: 3.60 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.32 Total: -6.21 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.01 Total: -47.77 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.06 Total: -11.36 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.41 -8.80 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345817406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.653 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds