Wall clock time and date at job start Tue Mar 31 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46829 * 2 1 4 4 H 1.09002 * 109.47638 * 296.79131 * 3 2 1 5 5 C 1.53001 * 109.47164 * 56.79392 * 3 2 1 6 6 C 1.52997 * 109.47075 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47287 * 299.99805 * 6 5 3 8 8 C 1.52998 * 109.47421 * 60.00105 * 7 6 5 9 9 C 1.53003 * 109.46759 * 176.78925 * 3 2 1 10 10 H 1.09007 * 109.47091 * 60.00478 * 9 3 2 11 11 N 1.46493 * 109.47243 * 300.00145 * 9 3 2 12 12 C 1.46504 * 120.00193 * 344.38062 * 11 9 3 13 13 C 1.34780 * 120.00161 * 164.37956 * 11 9 3 14 14 O 1.21585 * 119.99691 * 359.97438 * 13 11 9 15 15 N 1.34768 * 120.00225 * 179.73015 * 13 11 9 16 16 C 1.46501 * 120.00196 * 180.27839 * 15 13 11 17 17 C 1.53006 * 109.47369 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47015 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00434 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99983 * 179.97438 * 18 17 16 21 21 N 1.31523 * 119.99743 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00257 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47084 * 90.00437 * 22 20 18 24 24 H 1.48501 * 109.47513 * 209.99975 * 22 20 18 25 25 H 1.48501 * 109.47441 * 330.00412 * 22 20 18 26 26 H 1.09003 * 109.47146 * 299.99452 * 1 2 3 27 27 H 1.08999 * 109.47770 * 59.99581 * 1 2 3 28 28 H 1.09002 * 109.47064 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46428 * 240.00537 * 2 1 3 30 30 H 1.08992 * 109.47260 * 120.00811 * 2 1 3 31 31 H 1.09003 * 109.46622 * 299.99621 * 5 3 2 32 32 H 1.09002 * 109.47056 * 59.99383 * 5 3 2 33 33 H 1.09002 * 109.47372 * 59.99957 * 6 5 3 34 34 H 1.09007 * 109.46839 * 179.97438 * 6 5 3 35 35 H 1.09002 * 109.47179 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47237 * 299.99840 * 7 6 5 37 37 H 1.08990 * 109.47532 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.47132 * 59.99670 * 8 7 6 39 39 H 1.08996 * 109.46940 * 273.75605 * 12 11 9 40 40 H 1.09001 * 109.46693 * 33.75562 * 12 11 9 41 41 H 1.08995 * 109.46911 * 153.75681 * 12 11 9 42 42 H 0.97006 * 120.00523 * 0.26947 * 15 13 11 43 43 H 1.09008 * 109.46730 * 299.99293 * 16 15 13 44 44 H 1.08993 * 109.47573 * 59.99349 * 16 15 13 45 45 H 1.08995 * 109.46831 * 299.99685 * 17 16 15 46 46 H 1.09001 * 109.46745 * 59.99655 * 17 16 15 47 47 H 0.97008 * 119.99567 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.7244 1.9395 -0.9173 5 6 1.4651 2.1867 1.2070 6 6 1.9755 3.6290 1.2073 7 6 3.5033 3.6293 1.2883 8 6 4.0783 2.8852 0.0814 9 6 3.5678 1.4432 0.0808 10 1 3.9774 0.9131 -0.7791 11 7 3.9920 0.7753 1.3137 12 6 3.0261 0.5427 2.3904 13 6 5.2708 0.3748 1.4575 14 8 6.0723 0.5674 0.5637 15 7 5.6623 -0.2348 2.5939 16 6 7.0538 -0.6647 2.7527 17 6 7.2312 -1.3228 4.1225 18 6 8.6624 -1.7656 4.2855 19 1 9.3743 -1.5951 3.4914 20 6 9.0632 -2.3884 5.4484 21 7 8.1962 -2.5965 6.4153 22 14 10.8371 -2.9378 5.6502 23 1 11.6294 -1.8392 6.2591 24 1 10.8883 -4.1321 6.5314 25 1 11.4040 -3.2790 4.3208 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 0.3766 2.1861 1.1494 32 1 1.7807 1.6896 2.1243 33 1 1.6603 4.1262 0.2900 34 1 1.5656 4.1592 2.0670 35 1 3.8670 4.6569 1.2890 36 1 3.8186 3.1321 2.2057 37 1 5.1667 2.8850 0.1394 38 1 3.7630 3.3823 -0.8359 39 1 2.9770 1.4232 3.0309 40 1 2.0429 0.3503 1.9610 41 1 3.3399 -0.3185 2.9801 42 1 5.0229 -0.3889 3.3069 43 1 7.3044 -1.3809 1.9700 44 1 7.7123 0.2006 2.6777 45 1 6.9808 -0.6065 4.9049 46 1 6.5727 -2.1882 4.1978 47 1 8.4783 -3.0343 7.2337 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345817408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:04 Heat of formation + Delta-G solvation = -12.285170 kcal Electronic energy + Delta-G solvation = -23593.607743 eV Core-core repulsion = 20391.240903 eV Total energy + Delta-G solvation = -3202.366840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06662 -38.55886 -34.85626 -34.36021 -34.06717 -32.75137 -30.99140 -29.51850 -28.70280 -26.73237 -24.68950 -24.11909 -22.32789 -21.14818 -20.88923 -20.13231 -19.22396 -17.61440 -16.37460 -16.15773 -15.59297 -15.53971 -14.82949 -14.47886 -14.35858 -14.18365 -13.78289 -13.60712 -13.32808 -13.29924 -12.79201 -12.66163 -12.31331 -12.29209 -12.16029 -12.12173 -11.63303 -11.44487 -11.15054 -11.12666 -11.00860 -10.65783 -10.60742 -10.31876 -10.23194 -10.07309 -10.00808 -9.66077 -9.40768 -9.20683 -8.61461 -8.42159 -8.09879 -6.07167 -4.09503 2.98805 3.31165 3.37198 3.41952 3.65677 4.28523 4.43698 4.52524 4.53525 4.69099 4.86743 4.99392 5.03702 5.09783 5.18945 5.28589 5.29993 5.35099 5.37702 5.45859 5.49136 5.54576 5.56433 5.65662 5.75440 5.83662 5.88737 5.94990 6.01450 6.13569 6.14785 6.17350 6.26096 6.33971 6.37744 6.44512 6.79207 6.82001 7.07699 7.26747 7.59212 7.66382 7.92355 8.28848 8.45682 8.95712 9.07787 9.55115 11.04537 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028171 B = 0.003383 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.688192 B = 8273.913575 C = 8539.339813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.138 4.138 3 C -0.090 4.090 4 H 0.081 0.919 5 C -0.169 4.169 6 C -0.115 4.115 7 C -0.117 4.117 8 C -0.131 4.131 9 C 0.175 3.825 10 H 0.079 0.921 11 N -0.625 5.625 12 C 0.044 3.956 13 C 0.701 3.299 14 O -0.596 6.596 15 N -0.740 5.740 16 C 0.140 3.860 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.441 9.594 -10.201 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.174 4.174 3 C -0.109 4.109 4 H 0.099 0.901 5 C -0.205 4.205 6 C -0.152 4.152 7 C -0.155 4.155 8 C -0.170 4.170 9 C 0.071 3.929 10 H 0.097 0.903 11 N -0.364 5.364 12 C -0.098 4.098 13 C 0.402 3.598 14 O -0.475 6.475 15 N -0.395 5.395 16 C 0.017 3.983 17 C -0.024 4.024 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.227 0.773 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.834 9.638 -10.679 22.912 hybrid contribution 0.630 -0.327 0.573 0.913 sum -17.203 9.310 -10.106 22.018 Atomic orbital electron populations 1.21841 0.95817 1.01544 1.01866 1.21950 0.95871 0.96371 1.03252 1.21386 0.93802 0.96152 0.99572 0.90073 1.22852 1.00329 0.96439 1.00897 1.21492 0.95848 0.96601 1.01305 1.21481 0.95097 0.99821 0.99073 1.21912 1.01838 0.95113 0.98142 1.20747 0.93077 0.92515 0.86597 0.90320 1.46963 1.08233 1.63251 1.17953 1.22778 0.95628 1.00627 0.90793 1.15976 0.81728 0.78691 0.83404 1.90868 1.51958 1.62714 1.41931 1.45695 1.13741 1.62909 1.17128 1.21565 0.78160 0.98166 1.00419 1.19315 0.97740 0.95683 0.89663 1.21059 0.94687 1.38444 1.01639 0.92239 1.24993 0.97748 0.95751 0.95811 1.69965 1.34234 1.42908 1.06293 0.86515 0.84720 0.78176 0.78156 1.20581 1.21197 1.19715 0.92316 0.92932 0.92859 0.91823 0.90079 0.91804 0.87409 0.92556 0.92348 0.92517 0.91765 0.90783 0.91667 0.92414 0.87333 0.91780 0.77293 0.92900 0.92906 0.96052 0.96057 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.48 37.16 0.35 -0.70 16 2 C -0.14 -1.15 4.98 -26.73 -0.13 -1.29 16 3 C -0.09 -0.79 2.03 -90.62 -0.18 -0.97 16 4 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 5 C -0.17 -1.32 4.19 -26.73 -0.11 -1.43 16 6 C -0.11 -0.96 5.92 -26.74 -0.16 -1.12 16 7 C -0.12 -1.23 5.67 -26.73 -0.15 -1.38 16 8 C -0.13 -1.56 5.45 -26.75 -0.15 -1.70 16 9 C 0.17 2.08 2.17 -67.95 -0.15 1.94 16 10 H 0.08 1.08 7.88 -51.92 -0.41 0.67 16 11 N -0.63 -8.35 2.12 -194.40 -0.41 -8.77 16 12 C 0.04 0.45 6.87 59.85 0.41 0.86 16 13 C 0.70 12.70 8.09 -86.92 -0.70 12.00 16 14 O -0.60 -13.04 15.45 5.29 0.08 -12.95 16 15 N -0.74 -13.63 5.42 -65.22 -0.35 -13.99 16 16 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 17 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 18 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 22 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H 0.06 0.37 6.37 -51.93 -0.33 0.03 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.73 4.88 -51.93 -0.25 0.48 16 31 H 0.06 0.44 6.37 -51.93 -0.33 0.11 16 32 H 0.11 0.85 2.79 -69.70 -0.19 0.66 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.77 6.35 -51.93 -0.33 0.44 16 37 H 0.07 1.11 7.38 -51.93 -0.38 0.72 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.55 6.07 -51.93 -0.32 0.23 16 40 H 0.11 0.90 2.65 -51.93 -0.14 0.76 16 41 H 0.06 0.66 6.18 -51.93 -0.32 0.34 16 42 H 0.39 6.34 6.13 -40.82 -0.25 6.09 16 43 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -31.64 344.08 -9.20 -40.85 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.87 Total: 2.58 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.55 Total: -3.89 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.03 Total: -48.30 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.64 -9.20 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345817408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.561 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds