Wall clock time and date at job start Tue Mar 31 2020 05:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 H 1.09003 * 109.46802 * 304.99493 * 3 2 1 5 5 C 1.53001 * 109.47293 * 64.99740 * 3 2 1 6 6 C 1.53005 * 109.46820 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47145 * 299.99738 * 6 5 3 8 8 C 1.53001 * 109.47048 * 60.00401 * 7 6 5 9 9 C 1.52995 * 109.46916 * 185.00064 * 3 2 1 10 10 H 1.09000 * 109.47368 * 299.99127 * 9 3 2 11 11 N 1.46502 * 109.47349 * 59.99752 * 9 3 2 12 12 C 1.46499 * 120.00062 * 60.00143 * 11 9 3 13 13 C 1.34779 * 119.99726 * 239.99897 * 11 9 3 14 14 O 1.21582 * 120.00318 * 0.02562 * 13 11 9 15 15 N 1.34774 * 119.99640 * 180.02562 * 13 11 9 16 16 C 1.46499 * 120.00002 * 180.02562 * 15 13 11 17 17 C 1.53001 * 109.47403 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47045 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00341 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99889 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99940 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00084 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47161 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47190 * 120.00121 * 22 20 18 25 25 H 1.48506 * 109.46993 * 239.99887 * 22 20 18 26 26 H 1.09001 * 109.47030 * 60.00671 * 1 2 3 27 27 H 1.09002 * 109.46596 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47262 * 299.99972 * 1 2 3 29 29 H 1.08999 * 109.46921 * 239.99616 * 2 1 3 30 30 H 1.09001 * 109.47030 * 119.99329 * 2 1 3 31 31 H 1.08996 * 109.47049 * 299.99649 * 5 3 2 32 32 H 1.08996 * 109.47065 * 59.99959 * 5 3 2 33 33 H 1.09003 * 109.47140 * 59.99836 * 6 5 3 34 34 H 1.09000 * 109.46688 * 179.97438 * 6 5 3 35 35 H 1.08997 * 109.47205 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47490 * 300.00787 * 7 6 5 37 37 H 1.09002 * 109.47512 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.47398 * 59.99803 * 8 7 6 39 39 H 1.09002 * 109.47391 * 89.99876 * 12 11 9 40 40 H 1.09001 * 109.46813 * 329.99933 * 12 11 9 41 41 H 1.09004 * 109.47041 * 210.00060 * 12 11 9 42 42 H 0.97001 * 120.00361 * 359.97438 * 15 13 11 43 43 H 1.09002 * 109.47093 * 299.99866 * 16 15 13 44 44 H 1.09006 * 109.47588 * 59.99611 * 16 15 13 45 45 H 1.09002 * 109.47172 * 300.00167 * 17 16 15 46 46 H 1.09004 * 109.47016 * 59.99953 * 17 16 15 47 47 H 0.96998 * 120.00002 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 2.1446 3.5693 1.3069 7 6 3.6694 3.5717 1.1810 8 6 4.0742 2.8876 -0.1263 9 6 3.5647 1.4443 -0.1257 10 1 3.9994 0.9055 0.7161 11 7 3.9524 0.7893 -1.3775 12 6 3.4909 1.3278 -2.6595 13 6 4.7335 -0.3087 -1.3497 14 8 5.1161 -0.7558 -0.2858 15 7 5.0905 -0.9110 -2.5013 16 6 5.9391 -2.1048 -2.4712 17 6 6.1928 -2.5865 -3.9010 18 6 7.0663 -3.8141 -3.8699 19 1 7.4061 -4.2113 -2.9249 20 6 7.4316 -4.4303 -5.0481 21 7 7.0174 -3.9468 -6.1989 22 14 8.5137 -5.9524 -5.0096 23 1 8.8409 -6.2917 -3.6014 24 1 7.7928 -7.0884 -5.6383 25 1 9.7683 -5.6870 -5.7586 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 0.5489 2.1253 1.3968 32 1 2.0697 1.5876 2.1491 33 1 1.7096 4.1080 0.4650 34 1 1.8558 4.0568 2.2381 35 1 4.0323 4.5995 1.1812 36 1 4.1044 3.0329 2.0228 37 1 5.1605 2.8897 -0.2163 38 1 3.6392 3.4264 -0.9682 39 1 4.2134 2.0554 -3.0291 40 1 2.5243 1.8126 -2.5230 41 1 3.3918 0.5159 -3.3800 42 1 4.7850 -0.5545 -3.3501 43 1 6.8893 -1.8632 -1.9948 44 1 5.4393 -2.8918 -1.9063 45 1 5.2425 -2.8282 -4.3770 46 1 6.6925 -1.7997 -4.4662 47 1 7.2747 -4.3801 -7.0278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345817410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:07 Heat of formation + Delta-G solvation = -63.393079 kcal Electronic energy + Delta-G solvation = -23183.528355 eV Core-core repulsion = 19978.945310 eV Total energy + Delta-G solvation = -3204.583045 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40108 -38.50639 -34.96664 -34.73234 -34.05513 -32.78369 -30.37256 -29.35360 -28.68000 -26.70421 -24.69898 -24.02059 -22.49757 -20.94013 -20.79305 -20.04322 -19.28852 -17.65631 -16.58340 -16.15052 -15.56432 -15.01840 -14.96563 -14.50663 -14.22321 -14.14500 -13.82267 -13.59587 -13.36834 -13.27288 -12.84565 -12.68724 -12.62289 -12.31243 -12.24048 -11.69416 -11.62217 -11.34755 -11.19708 -11.11123 -11.03428 -10.93964 -10.60081 -10.54191 -10.34817 -10.28540 -10.22280 -9.80058 -9.49873 -9.21367 -8.62304 -8.43000 -8.12347 -6.07523 -4.09806 2.96554 3.29771 3.37328 3.43002 3.62289 4.31789 4.42661 4.51608 4.59334 4.69147 4.89843 4.96887 5.08371 5.12760 5.19657 5.29504 5.29687 5.30808 5.36969 5.46289 5.52800 5.56145 5.60784 5.69381 5.82110 5.86377 5.88612 5.95635 5.98643 6.02556 6.11856 6.17579 6.26150 6.32812 6.40817 6.43700 6.73647 6.81156 7.06253 7.26197 7.58993 7.65921 7.92102 8.28190 8.43824 8.95549 9.05476 9.54861 11.04241 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030010 B = 0.003184 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.802587 B = 8791.024065 C = 9056.402225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.094 4.094 4 H 0.070 0.930 5 C -0.113 4.113 6 C -0.120 4.120 7 C -0.116 4.116 8 C -0.127 4.127 9 C 0.163 3.837 10 H 0.101 0.899 11 N -0.631 5.631 12 C 0.079 3.921 13 C 0.701 3.299 14 O -0.597 6.597 15 N -0.739 5.739 16 C 0.140 3.860 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.284 1.284 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.393 0.607 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 16.562 11.004 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.114 4.114 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.166 4.166 9 C 0.058 3.942 10 H 0.119 0.881 11 N -0.369 5.369 12 C -0.065 4.065 13 C 0.402 3.598 14 O -0.476 6.476 15 N -0.394 5.394 16 C 0.017 3.983 17 C -0.024 4.024 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.227 0.773 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.775 16.150 11.573 23.621 hybrid contribution 0.424 -0.616 -0.737 1.050 sum -12.350 15.534 10.836 22.611 Atomic orbital electron populations 1.21806 0.96147 1.01438 1.01368 1.21494 0.95233 0.95994 1.02743 1.21517 0.95222 0.96503 0.98151 0.91139 1.21609 1.00732 0.95400 0.97339 1.21560 0.95754 0.96830 1.01592 1.21496 0.95879 1.00377 0.97701 1.21902 1.01279 0.95460 0.97943 1.20922 0.93627 0.92510 0.87109 0.88094 1.47031 1.53847 1.29328 1.06664 1.21655 0.99888 0.99436 0.85535 1.15993 0.79048 0.79850 0.84881 1.90861 1.60541 1.66746 1.29448 1.45680 1.55079 1.31929 1.06676 1.21575 0.92071 0.83564 1.01118 1.19322 0.97412 0.96565 0.89145 1.21097 1.30814 1.10936 0.92907 0.92172 1.25001 0.96252 0.97652 0.95446 1.69970 1.45453 1.40569 0.97396 0.86461 0.80181 0.82699 0.78255 1.19557 1.20956 1.20963 0.93062 0.92958 0.92776 0.91733 0.91955 0.91563 0.91732 0.92087 0.92068 0.91901 0.91728 0.91604 0.91872 0.92947 0.91137 0.91364 0.77262 0.92859 0.92877 0.96045 0.96030 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.67 37.16 0.36 -1.02 16 2 C -0.12 -1.32 5.32 -26.73 -0.14 -1.46 16 3 C -0.09 -0.93 1.56 -90.62 -0.14 -1.07 16 4 H 0.07 0.65 6.66 -51.93 -0.35 0.30 16 5 C -0.11 -0.93 4.96 -26.73 -0.13 -1.07 16 6 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 7 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 8 C -0.13 -1.27 5.21 -26.70 -0.14 -1.41 16 9 C 0.16 1.95 1.97 -67.90 -0.13 1.81 16 10 H 0.10 1.50 6.90 -51.93 -0.36 1.14 16 11 N -0.63 -8.60 1.91 -179.64 -0.34 -8.95 16 12 C 0.08 0.82 9.26 59.85 0.55 1.37 16 13 C 0.70 12.79 8.25 -86.92 -0.72 12.07 16 14 O -0.60 -13.12 15.67 5.29 0.08 -13.04 16 15 N -0.74 -13.69 5.42 -65.22 -0.35 -14.04 16 16 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 19 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 22 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.44 6.57 -51.93 -0.34 0.10 16 29 H 0.06 0.86 7.42 -51.93 -0.39 0.48 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.49 6.56 -51.93 -0.34 0.15 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 41 H 0.07 0.71 6.36 -51.93 -0.33 0.38 16 42 H 0.39 6.39 6.20 -40.82 -0.25 6.13 16 43 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -31.64 361.27 -9.39 -41.02 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -8.55 Total: 1.60 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.38 Total: -3.01 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.04 Total: -48.56 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.64 -9.39 -41.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345817410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.370 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds