Wall clock time and date at job start Tue Mar 31 2020 05:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 H 1.08997 * 110.05840 * 53.58218 * 3 2 1 5 5 C 1.53876 * 110.02939 * 292.16946 * 3 2 1 6 6 C 1.54268 * 106.59766 * 240.71381 * 5 3 2 7 7 C 1.54888 * 104.19735 * 336.39225 * 6 5 3 8 8 C 1.54260 * 110.03458 * 175.00512 * 3 2 1 9 9 H 1.09005 * 110.59777 * 24.15468 * 8 3 2 10 10 N 1.46904 * 110.48450 * 261.57253 * 8 3 2 11 11 C 1.46902 * 110.99914 * 158.76561 * 10 8 3 12 12 C 1.50699 * 109.46944 * 179.97438 * 11 10 8 13 13 O 1.21276 * 120.00018 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00043 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99687 * 0.02562 * 14 12 11 16 16 C 1.53002 * 109.47219 * 269.99856 * 15 14 12 17 17 C 1.46493 * 120.00248 * 180.02562 * 14 12 11 18 18 C 1.50706 * 109.47128 * 269.99866 * 17 14 12 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 14 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 14 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 H 1.09000 * 109.47418 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47135 * 300.00115 * 1 2 3 28 28 H 1.08997 * 109.47545 * 59.99843 * 1 2 3 29 29 H 1.08998 * 109.46743 * 240.00034 * 2 1 3 30 30 H 1.08997 * 109.47545 * 120.00157 * 2 1 3 31 31 H 1.09007 * 110.02993 * 121.43471 * 5 3 2 32 32 H 1.08996 * 110.03757 * 359.97438 * 5 3 2 33 33 H 1.09000 * 110.48411 * 217.71597 * 6 5 3 34 34 H 1.08996 * 110.59812 * 95.12485 * 6 5 3 35 35 H 1.08998 * 110.75618 * 279.62812 * 7 6 5 36 36 H 1.08994 * 110.91855 * 156.33086 * 7 6 5 37 37 H 1.00894 * 111.00188 * 282.72341 * 10 8 3 38 38 H 1.09005 * 109.46869 * 60.00466 * 11 10 8 39 39 H 1.08998 * 109.47593 * 300.00154 * 11 10 8 40 40 H 1.08994 * 109.46878 * 30.00015 * 15 14 12 41 41 H 1.09002 * 109.46817 * 150.00396 * 15 14 12 42 42 H 1.09003 * 109.47088 * 300.00462 * 16 15 14 43 43 H 1.08998 * 109.46930 * 60.00022 * 16 15 14 44 44 H 1.08994 * 109.47076 * 180.02562 * 16 15 14 45 45 H 1.09001 * 109.47786 * 150.00138 * 17 14 12 46 46 H 1.09006 * 109.47401 * 29.99724 * 17 14 12 47 47 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9976 0.8239 5 6 1.7013 2.1212 -1.3388 6 6 3.0448 2.5270 -1.9794 7 6 4.0201 2.6343 -0.7809 8 6 3.5773 1.4595 0.1262 9 1 4.0018 0.5210 -0.2306 10 7 3.9762 1.7063 1.5183 11 6 5.3477 1.2405 1.7634 12 6 5.7209 1.5104 3.1983 13 8 4.9228 2.0382 3.9435 14 7 6.9416 1.1651 3.6535 15 6 7.9059 0.5280 2.7532 16 6 7.7347 -0.9912 2.8150 17 6 7.3043 1.4269 5.0485 18 6 7.9279 2.7946 5.1573 19 1 8.0430 3.4073 4.2753 20 6 8.3515 3.2637 6.3826 21 7 8.2118 2.5174 7.4565 22 14 9.1252 4.9586 6.5171 23 1 9.4915 5.2246 7.9314 24 1 10.3439 5.0151 5.6705 25 1 8.1544 5.9838 6.0566 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.0886 3.0058 -1.1645 32 1 1.1741 1.4229 -1.9887 33 1 2.9520 3.4892 -2.4830 34 1 3.3826 1.7623 -2.6788 35 1 3.8965 3.5873 -0.2665 36 1 5.0521 2.5036 -1.1061 37 1 3.8779 2.6821 1.7551 38 1 6.0348 1.7707 1.1039 39 1 5.4086 0.1701 1.5670 40 1 7.7329 0.8719 1.7335 41 1 8.9181 0.7923 3.0591 42 1 7.9076 -1.3351 3.8348 43 1 6.7225 -1.2555 2.5092 44 1 8.4524 -1.4652 2.1455 45 1 8.0173 0.6747 5.3860 46 1 6.4100 1.3849 5.6705 47 1 7.8104 1.6371 7.3865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348152417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:23 Heat of formation + Delta-G solvation = -63.248105 kcal Electronic energy + Delta-G solvation = -22983.395161 eV Core-core repulsion = 19778.818402 eV Total energy + Delta-G solvation = -3204.576759 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.53056 -38.71821 -35.43624 -34.46974 -33.11641 -32.88562 -30.06500 -28.71878 -27.67941 -26.68146 -24.76825 -23.06395 -22.68197 -22.18833 -20.77122 -19.69852 -18.47676 -16.93057 -16.54644 -16.07440 -15.70163 -15.41772 -14.95960 -14.27322 -13.86634 -13.72779 -13.59725 -13.47675 -13.33565 -13.20223 -13.10946 -12.47542 -12.29697 -12.05657 -11.90193 -11.77537 -11.53657 -11.46253 -11.27849 -11.24110 -10.94138 -10.84941 -10.77578 -10.69227 -10.52130 -10.51248 -10.47830 -10.09320 -9.11921 -8.94652 -8.37111 -8.22211 -7.60481 -6.36853 -4.08745 3.39961 3.43808 3.47633 3.64297 3.70778 4.27311 4.42178 4.52198 4.55197 4.77190 5.00755 5.05350 5.13018 5.20163 5.23001 5.24247 5.35822 5.38841 5.42376 5.47777 5.50399 5.54843 5.58850 5.61129 5.68796 5.74821 5.76941 5.84181 5.93068 5.96861 6.02503 6.04303 6.12659 6.16051 6.24088 6.33539 6.41580 6.81204 7.06583 7.18857 7.44848 7.47455 8.06373 8.33664 8.45076 8.79662 9.07623 9.61176 11.00420 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020919 B = 0.003622 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.184789 B = 7729.267097 C = 8041.783986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.082 4.082 4 H 0.080 0.920 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.159 4.159 8 C 0.089 3.911 9 H 0.082 0.918 10 N -0.665 5.665 11 C 0.043 3.957 12 C 0.504 3.496 13 O -0.529 6.529 14 N -0.596 5.596 15 C 0.107 3.893 16 C -0.169 4.169 17 C 0.238 3.762 18 C -0.606 4.606 19 H 0.050 0.950 20 C 0.019 3.981 21 N -0.910 5.910 22 Si 1.071 2.929 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.352 0.648 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.020 0.980 46 H 0.033 0.967 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.526 -5.303 -20.096 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.101 4.101 4 H 0.099 0.901 5 C -0.159 4.159 6 C -0.158 4.158 7 C -0.199 4.199 8 C -0.022 4.022 9 H 0.100 0.900 10 N -0.297 5.297 11 C -0.089 4.089 12 C 0.290 3.710 13 O -0.405 6.405 14 N -0.329 5.329 15 C -0.017 4.017 16 C -0.227 4.227 17 C 0.118 3.882 18 C -0.645 4.645 19 H 0.068 0.932 20 C -0.185 4.185 21 N -0.546 5.546 22 Si 0.899 3.101 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.214 1.214 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.172 0.828 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.038 0.962 46 H 0.051 0.949 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.566 -4.525 -18.327 20.729 hybrid contribution 0.023 -0.444 -1.664 1.722 sum -8.543 -4.969 -19.990 22.300 Atomic orbital electron populations 1.21801 0.96163 1.01243 1.01725 1.21555 0.95530 0.96111 1.01856 1.21757 0.94549 0.96400 0.97400 0.90120 1.22250 0.97138 1.00135 0.96371 1.22244 0.95317 1.01056 0.97196 1.23267 0.99217 0.99692 0.97675 1.22543 0.95291 0.97595 0.86742 0.90000 1.60180 1.22418 1.26392 1.20663 1.21889 0.90286 1.01663 0.95067 1.20246 0.82111 0.79460 0.89166 1.90670 1.49610 1.42271 1.57942 1.48054 1.12601 1.58910 1.13290 1.21402 0.94698 0.92031 0.93554 1.22225 1.01361 0.96712 1.02450 1.19290 0.95757 0.96478 0.76686 1.22249 1.43675 1.01897 0.96637 0.93195 1.25804 0.95989 1.04866 0.91841 1.70800 1.41781 1.11642 1.30334 0.83511 0.75995 0.74503 0.76057 1.20650 1.21499 1.21441 0.93114 0.92663 0.92935 0.92528 0.91440 0.91979 0.91655 0.91933 0.91782 0.91202 0.91752 0.82771 0.93043 0.88945 0.91779 0.90061 0.92177 0.92959 0.92099 0.96199 0.94930 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.74 37.16 0.36 -0.95 16 2 C -0.11 -1.09 5.06 -26.73 -0.14 -1.22 16 3 C -0.08 -0.84 2.66 -89.50 -0.24 -1.08 16 4 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 5 C -0.12 -1.04 5.96 -25.61 -0.15 -1.19 16 6 C -0.12 -1.01 6.83 -25.07 -0.17 -1.18 16 7 C -0.16 -1.59 6.41 -24.74 -0.16 -1.75 16 8 C 0.09 0.99 2.69 -66.06 -0.18 0.81 16 9 H 0.08 0.88 7.59 -51.93 -0.39 0.48 16 10 N -0.67 -9.70 5.90 -106.24 -0.63 -10.33 16 11 C 0.04 0.66 4.57 -4.98 -0.02 0.64 16 12 C 0.50 10.67 7.71 -10.98 -0.08 10.59 16 13 O -0.53 -13.64 15.78 5.56 0.09 -13.55 16 14 N -0.60 -12.76 2.46 -175.05 -0.43 -13.19 16 15 C 0.11 1.74 5.93 -4.04 -0.02 1.72 16 16 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 17 C 0.24 6.27 4.47 -5.19 -0.02 6.25 16 18 C -0.61 -17.55 9.39 -34.44 -0.32 -17.87 16 19 H 0.05 1.45 7.81 -52.48 -0.41 1.04 16 20 C 0.02 0.56 5.46 -17.82 -0.10 0.47 16 21 N -0.91 -28.07 13.65 55.43 0.76 -27.31 16 22 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.41 7.00 -51.93 -0.36 0.04 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.51 6.87 -51.93 -0.36 0.15 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.75 7.82 -51.93 -0.41 0.34 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.35 5.53 8.00 -39.29 -0.31 5.22 16 38 H 0.05 0.71 7.38 -51.93 -0.38 0.33 16 39 H 0.09 1.25 7.12 -51.93 -0.37 0.88 16 40 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 41 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.67 7.22 -51.93 -0.37 0.30 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.02 0.53 7.94 -51.93 -0.41 0.11 16 46 H 0.03 0.97 7.29 -51.93 -0.38 0.59 16 47 H 0.27 8.21 7.22 -40.82 -0.29 7.92 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -33.29 369.36 -9.25 -42.53 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.65 Total: 2.22 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.87 Total: -6.68 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.30 Total: -50.82 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.55 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.29 -9.25 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348152417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.715 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds