Wall clock time and date at job start Tue Mar 31 2020 05:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.08999 * 110.01747 * 306.39451 * 3 2 1 5 5 C 1.54463 * 110.16183 * 67.65175 * 3 2 1 6 6 C 1.54890 * 104.10368 * 142.74946 * 5 3 2 7 7 C 1.54887 * 102.91108 * 322.30112 * 6 5 3 8 8 C 1.53877 * 110.03157 * 185.00012 * 3 2 1 9 9 H 1.08995 * 110.02951 * 121.38598 * 8 3 2 10 10 N 1.46899 * 110.03055 * 359.95300 * 8 3 2 11 11 C 1.46900 * 110.99703 * 156.38177 * 10 8 3 12 12 C 1.50703 * 109.47289 * 179.97438 * 11 10 8 13 13 O 1.21285 * 119.99732 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00349 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99475 * 359.97438 * 14 12 11 16 16 C 1.52999 * 109.47149 * 90.00353 * 15 14 12 17 17 C 1.46497 * 119.99955 * 180.02562 * 14 12 11 18 18 C 1.50696 * 109.47435 * 89.99807 * 17 14 12 19 19 H 1.07997 * 119.99824 * 359.97438 * 18 17 14 20 20 C 1.37878 * 120.00056 * 179.97438 * 18 17 14 21 21 N 1.31509 * 119.99924 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00004 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47350 * 59.99815 * 22 20 18 24 24 H 1.48494 * 109.47201 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46886 * 300.00096 * 22 20 18 26 26 H 1.09000 * 109.46675 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46931 * 299.99699 * 1 2 3 28 28 H 1.08992 * 109.46955 * 59.99855 * 1 2 3 29 29 H 1.08999 * 109.46886 * 239.99778 * 2 1 3 30 30 H 1.09002 * 109.47365 * 119.99800 * 2 1 3 31 31 H 1.09003 * 110.40626 * 24.15971 * 5 3 2 32 32 H 1.09003 * 110.65885 * 261.46196 * 5 3 2 33 33 H 1.09002 * 110.75897 * 203.89231 * 6 5 3 34 34 H 1.09006 * 110.75292 * 80.70460 * 6 5 3 35 35 H 1.09004 * 110.48468 * 156.53190 * 7 6 5 36 36 H 1.09006 * 110.48476 * 279.16949 * 7 6 5 37 37 H 1.00900 * 111.00254 * 280.32715 * 10 8 3 38 38 H 1.08996 * 109.47234 * 299.99771 * 11 10 8 39 39 H 1.09001 * 109.47558 * 59.99561 * 11 10 8 40 40 H 1.09011 * 109.46973 * 210.00010 * 15 14 12 41 41 H 1.08992 * 109.47717 * 329.99908 * 15 14 12 42 42 H 1.09005 * 109.47117 * 59.99445 * 16 15 14 43 43 H 1.09001 * 109.47266 * 179.97438 * 16 15 14 44 44 H 1.08997 * 109.47021 * 299.99535 * 16 15 14 45 45 H 1.09001 * 109.46771 * 209.99856 * 17 14 12 46 46 H 1.09000 * 109.46896 * 329.99100 * 17 14 12 47 47 H 0.97003 * 120.00314 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5915 1.9968 -0.8244 5 6 1.6977 2.1282 1.3411 6 6 2.9289 3.0215 1.6333 7 6 4.1124 2.1507 1.1435 8 6 3.5736 1.4594 -0.1260 9 1 3.8692 2.0219 -1.0115 10 7 4.0869 0.0854 -0.2073 11 6 5.3985 0.0517 -0.8680 12 6 5.8923 -1.3707 -0.9323 13 8 5.2181 -2.2679 -0.4725 14 7 7.0830 -1.6457 -1.5007 15 6 7.8970 -0.5618 -2.0565 16 6 8.8290 -0.0166 -0.9725 17 6 7.5626 -3.0285 -1.5637 18 6 7.0884 -3.6669 -2.8437 19 1 6.4893 -3.0995 -3.5404 20 6 7.4194 -4.9754 -3.1253 21 7 8.1494 -5.6661 -2.2771 22 14 6.8322 -5.7665 -4.7123 23 1 7.3631 -5.0047 -5.8713 24 1 7.3193 -7.1678 -4.7767 25 1 5.3478 -5.7557 -4.7511 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5712 1.3838 2.1272 32 1 0.7991 2.7373 1.2432 33 1 3.0144 3.2243 2.7009 34 1 2.8739 3.9519 1.0680 35 1 4.9718 2.7761 0.9017 36 1 4.3786 1.4098 1.8975 37 1 4.1318 -0.3386 0.7072 38 1 5.3069 0.4509 -1.8781 39 1 6.1065 0.6564 -0.3012 40 1 8.4903 -0.9427 -2.8879 41 1 7.2455 0.2369 -2.4109 42 1 9.4805 -0.8154 -0.6181 43 1 9.4350 0.7895 -1.3862 44 1 8.2358 0.3642 -0.1412 45 1 8.6522 -3.0367 -1.5355 46 1 7.1730 -3.5873 -0.7128 47 1 8.3820 -6.5868 -2.4751 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348152419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:30 Heat of formation + Delta-G solvation = -53.791231 kcal Electronic energy + Delta-G solvation = -23159.268268 eV Core-core repulsion = 19955.101590 eV Total energy + Delta-G solvation = -3204.166678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.53918 -38.62102 -35.27826 -34.16514 -32.96469 -32.70795 -30.07374 -28.69186 -27.60446 -26.91230 -24.77886 -22.98499 -22.60915 -22.15511 -20.93146 -19.10753 -18.31370 -16.62378 -16.33739 -16.15316 -15.50015 -15.16988 -14.76237 -14.43945 -14.24093 -13.92637 -13.56758 -13.37255 -13.29165 -12.99717 -12.63673 -12.52812 -12.05990 -11.96471 -11.79840 -11.62849 -11.49192 -11.23946 -11.15280 -11.12118 -10.90048 -10.88024 -10.69470 -10.62825 -10.47929 -10.34964 -10.23163 -10.08789 -9.60421 -8.82440 -8.39357 -8.16082 -7.60139 -6.00355 -4.04744 3.34889 3.39146 3.41719 3.51461 3.82336 4.35492 4.47441 4.49577 4.57003 4.82365 5.12599 5.14482 5.28996 5.29656 5.31268 5.34286 5.41291 5.44112 5.48691 5.54905 5.55271 5.65253 5.67853 5.73725 5.77371 5.79620 5.85518 5.94205 6.00223 6.04670 6.13016 6.18965 6.24459 6.25886 6.48106 6.50030 6.72576 7.00950 7.21815 7.48702 7.52395 7.61152 7.96612 8.28388 8.49338 8.95329 9.18129 9.60351 11.07678 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.004083 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.601022 B = 6856.630701 C = 7909.080062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.081 4.081 4 H 0.069 0.931 5 C -0.121 4.121 6 C -0.122 4.122 7 C -0.155 4.155 8 C 0.087 3.913 9 H 0.078 0.922 10 N -0.660 5.660 11 C 0.040 3.960 12 C 0.504 3.496 13 O -0.529 6.529 14 N -0.600 5.600 15 C 0.107 3.893 16 C -0.168 4.168 17 C 0.248 3.752 18 C -0.525 4.525 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.350 0.650 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.030 0.970 46 H 0.042 0.958 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.397 18.914 5.646 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.100 4.100 4 H 0.087 0.913 5 C -0.158 4.158 6 C -0.160 4.160 7 C -0.195 4.195 8 C -0.024 4.024 9 H 0.096 0.904 10 N -0.292 5.292 11 C -0.092 4.092 12 C 0.290 3.710 13 O -0.405 6.405 14 N -0.333 5.333 15 C -0.017 4.017 16 C -0.227 4.227 17 C 0.129 3.871 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.725 3.275 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.171 0.829 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.060 0.940 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.993 18.049 5.332 20.447 hybrid contribution 0.465 -0.027 -0.265 0.536 sum -7.527 18.022 5.066 20.177 Atomic orbital electron populations 1.21854 0.97241 1.01197 1.00842 1.21339 0.93559 0.95259 1.03765 1.21837 0.94016 0.97170 0.97021 0.91265 1.22518 0.97365 0.98392 0.97553 1.22410 0.95004 0.98068 1.00543 1.23162 0.98206 0.99637 0.98464 1.22274 0.94879 0.88437 0.96811 0.90397 1.60339 1.24643 1.16822 1.27407 1.21931 0.90874 0.95731 1.00664 1.20230 0.81544 0.90077 0.79198 1.90671 1.55033 1.47647 1.47154 1.48251 1.18271 1.09683 1.57056 1.21385 0.94019 0.89929 0.96387 1.22220 1.00007 1.01016 0.99425 1.19227 0.94478 0.75390 0.98021 1.21412 1.33015 0.97335 1.04609 0.92538 1.24927 0.95090 0.96937 0.97132 1.69921 1.37635 1.10087 1.35890 0.86567 0.79320 0.78203 0.83384 1.20299 1.21221 1.20149 0.93063 0.93456 0.93364 0.90089 0.92198 0.91528 0.91973 0.91931 0.91687 0.91869 0.91458 0.82905 0.88961 0.93230 0.90012 0.91893 0.92058 0.92263 0.93265 0.95178 0.94005 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.77 37.16 0.36 -1.26 16 2 C -0.10 -1.23 4.30 -26.73 -0.11 -1.34 16 3 C -0.08 -0.84 2.92 -89.40 -0.26 -1.10 16 4 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 5 C -0.12 -1.07 5.56 -24.97 -0.14 -1.21 16 6 C -0.12 -1.02 6.90 -24.74 -0.17 -1.19 16 7 C -0.16 -1.48 6.40 -25.07 -0.16 -1.64 16 8 C 0.09 0.95 3.20 -66.59 -0.21 0.73 16 9 H 0.08 0.83 7.83 -51.93 -0.41 0.42 16 10 N -0.66 -9.32 3.98 -106.81 -0.43 -9.75 16 11 C 0.04 0.60 4.55 -4.97 -0.02 0.58 16 12 C 0.50 10.46 7.71 -10.98 -0.08 10.38 16 13 O -0.53 -13.39 15.78 5.55 0.09 -13.30 16 14 N -0.60 -12.66 2.46 -175.06 -0.43 -13.09 16 15 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16 16 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 17 C 0.25 6.54 5.16 -5.20 -0.03 6.51 16 18 C -0.52 -15.08 9.39 -34.44 -0.32 -15.41 16 19 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 22 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.44 7.51 -51.93 -0.39 0.05 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 30 H 0.06 0.78 7.61 -51.93 -0.40 0.38 16 31 H 0.07 0.62 7.77 -51.93 -0.40 0.22 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.69 7.58 -51.93 -0.39 0.30 16 37 H 0.35 5.22 7.47 -39.29 -0.29 4.93 16 38 H 0.09 1.28 7.33 -51.93 -0.38 0.90 16 39 H 0.05 0.64 7.14 -51.93 -0.37 0.27 16 40 H 0.08 1.37 8.07 -51.92 -0.42 0.95 16 41 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 45 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 46 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -32.13 368.28 -9.11 -41.24 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -8.71 Total: 1.83 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -0.89 Total: -3.45 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.12 Total: -49.03 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.13 -9.11 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348152419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.550 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds