Wall clock time and date at job start Tue Mar 31 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47428 * 2 1 4 4 H 1.08999 * 110.05425 * 306.42615 * 3 2 1 5 5 C 1.54266 * 110.02878 * 67.83723 * 3 2 1 6 6 C 1.55238 * 104.23333 * 142.89793 * 5 3 2 7 7 C 1.54894 * 102.58338 * 322.08174 * 6 5 3 8 8 C 1.53869 * 110.03216 * 185.00100 * 3 2 1 9 9 H 1.08995 * 110.03881 * 0.02562 * 8 3 2 10 10 N 1.46898 * 110.06868 * 121.41276 * 8 3 2 11 11 C 1.46913 * 110.99884 * 203.64314 * 10 8 3 12 12 C 1.50699 * 109.47097 * 179.97438 * 11 10 8 13 13 O 1.21284 * 120.00001 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99951 * 179.97438 * 12 11 10 15 15 C 1.46495 * 120.00288 * 0.02562 * 14 12 11 16 16 C 1.53013 * 109.47217 * 89.99492 * 15 14 12 17 17 C 1.46504 * 120.00192 * 179.97438 * 14 12 11 18 18 C 1.50705 * 109.47073 * 90.00011 * 17 14 12 19 19 H 1.07998 * 119.99542 * 0.02562 * 18 17 14 20 20 C 1.37871 * 119.99706 * 179.97438 * 18 17 14 21 21 N 1.31511 * 120.00773 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99585 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47089 * 90.00217 * 22 20 18 24 24 H 1.48504 * 109.47214 * 210.00317 * 22 20 18 25 25 H 1.48499 * 109.47302 * 330.00121 * 22 20 18 26 26 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46610 * 299.99387 * 1 2 3 28 28 H 1.08997 * 109.47076 * 59.99493 * 1 2 3 29 29 H 1.09008 * 109.47270 * 240.00251 * 2 1 3 30 30 H 1.08999 * 109.47565 * 120.00326 * 2 1 3 31 31 H 1.09005 * 110.48526 * 261.57665 * 5 3 2 32 32 H 1.09006 * 110.48581 * 24.21857 * 5 3 2 33 33 H 1.08996 * 110.89448 * 203.79739 * 6 5 3 34 34 H 1.08993 * 110.76342 * 80.31404 * 6 5 3 35 35 H 1.09002 * 110.48891 * 279.18596 * 7 6 5 36 36 H 1.08998 * 110.48494 * 156.67683 * 7 6 5 37 37 H 1.00902 * 111.00475 * 79.69055 * 10 8 3 38 38 H 1.08993 * 109.47006 * 299.99844 * 11 10 8 39 39 H 1.08996 * 109.46669 * 59.99889 * 11 10 8 40 40 H 1.08996 * 109.47495 * 209.99609 * 15 14 12 41 41 H 1.08999 * 109.47042 * 330.00485 * 15 14 12 42 42 H 1.08996 * 109.46830 * 180.02562 * 16 15 14 43 43 H 1.08996 * 109.46984 * 300.00430 * 16 15 14 44 44 H 1.08999 * 109.46304 * 60.00541 * 16 15 14 45 45 H 1.08996 * 109.47635 * 210.00312 * 17 14 12 46 46 H 1.09003 * 109.46870 * 330.00148 * 17 14 12 47 47 H 0.96994 * 120.00562 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5915 1.9976 -0.8239 5 6 1.7007 2.1229 1.3423 6 6 2.9314 3.0224 1.6361 7 6 4.1126 2.1495 1.1440 8 6 3.5735 1.4594 -0.1260 9 1 3.9544 0.4400 -0.1876 10 7 3.9730 2.2179 -1.3189 11 6 5.3048 1.8065 -1.7828 12 6 5.6794 2.6039 -3.0055 13 8 4.9122 3.4330 -3.4472 14 7 6.8668 2.3958 -3.6080 15 6 7.7932 1.3940 -3.0748 16 6 7.5127 0.0400 -3.7301 17 6 7.2307 3.1706 -4.7969 18 6 7.9491 4.4272 -4.3771 19 1 8.1179 4.6282 -3.3295 20 6 8.3915 5.3195 -5.3305 21 7 8.1863 5.0745 -6.6062 22 14 9.2825 6.8767 -4.8101 23 1 10.7419 6.6116 -4.7389 24 1 9.0223 7.9509 -5.8020 25 1 8.7916 7.3055 -3.4759 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 0.8000 2.7291 1.2457 32 1 1.5775 1.3771 2.1276 33 1 3.0191 3.2246 2.7036 34 1 2.8752 3.9515 1.0691 35 1 4.3788 1.4080 1.8973 36 1 4.9734 2.7732 0.9031 37 1 3.9422 3.2110 -1.1431 38 1 6.0355 1.9852 -0.9941 39 1 5.2910 0.7454 -2.0317 40 1 8.8182 1.6962 -3.2896 41 1 7.6571 1.3108 -1.9966 42 1 8.2017 -0.7054 -3.3330 43 1 6.4877 -0.2621 -3.5154 44 1 7.6488 0.1233 -4.8084 45 1 7.8841 2.5741 -5.4335 46 1 6.3285 3.4349 -5.3485 47 1 8.4979 5.7021 -7.2769 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348152420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:33 Heat of formation + Delta-G solvation = -59.261820 kcal Electronic energy + Delta-G solvation = -22979.276914 eV Core-core repulsion = 19774.873013 eV Total energy + Delta-G solvation = -3204.403900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.51545 -38.62964 -35.29479 -34.39457 -32.93373 -32.65200 -30.06256 -28.65573 -27.67944 -26.99838 -25.05730 -22.99000 -22.56182 -22.10684 -20.47094 -19.83984 -18.24729 -16.64049 -16.34726 -15.98838 -15.43028 -15.37579 -14.79211 -14.57755 -14.34512 -13.88856 -13.51533 -13.41691 -13.24769 -13.12724 -12.88363 -12.40081 -12.15578 -11.98847 -11.90084 -11.62853 -11.42151 -11.21678 -11.15689 -11.12330 -10.90830 -10.83190 -10.76659 -10.69519 -10.59103 -10.50050 -10.48966 -10.10634 -9.60525 -8.84285 -8.41504 -8.19465 -7.60497 -6.01970 -4.06713 3.30692 3.37374 3.40963 3.51513 3.80095 4.34706 4.43620 4.47403 4.56202 4.83646 5.01065 5.09718 5.17305 5.20290 5.30326 5.32531 5.35432 5.47070 5.49849 5.52839 5.55884 5.60801 5.61587 5.68528 5.73226 5.75787 5.84047 5.86047 5.92785 6.00499 6.04886 6.08760 6.12663 6.23598 6.25703 6.39958 6.51179 7.01869 7.22084 7.49127 7.53825 7.60712 7.95030 8.26775 8.49268 8.93568 9.17736 9.58435 11.06029 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.003695 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.014868 B = 7574.965187 C = 8112.605564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.084 4.084 4 H 0.087 0.913 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.157 4.157 8 C 0.088 3.912 9 H 0.077 0.923 10 N -0.664 5.664 11 C 0.041 3.959 12 C 0.504 3.496 13 O -0.529 6.529 14 N -0.600 5.600 15 C 0.107 3.893 16 C -0.169 4.169 17 C 0.247 3.753 18 C -0.525 4.525 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.351 0.649 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 -11.799 16.079 21.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.103 4.103 4 H 0.105 0.895 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.197 4.197 8 C -0.023 4.023 9 H 0.096 0.904 10 N -0.296 5.296 11 C -0.091 4.091 12 C 0.290 3.710 13 O -0.405 6.405 14 N -0.333 5.333 15 C -0.017 4.017 16 C -0.228 4.228 17 C 0.128 3.872 18 C -0.564 4.564 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.200 1.200 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.172 0.828 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.334 -11.679 15.176 21.303 hybrid contribution 1.305 1.215 0.894 1.995 sum -8.029 -10.463 16.070 20.789 Atomic orbital electron populations 1.21777 0.96021 1.01217 1.01867 1.21589 0.95752 0.96143 1.01649 1.21855 0.94377 0.96159 0.97938 0.89479 1.22514 0.97766 0.98374 0.96975 1.22533 0.94738 0.98412 1.00550 1.23113 0.98281 0.99438 0.98828 1.22296 0.95133 0.97397 0.87459 0.90430 1.60298 1.25987 1.10580 1.32769 1.21925 0.90716 1.00439 0.96054 1.20217 0.81919 0.83822 0.85090 1.90671 1.50167 1.34687 1.65004 1.48249 1.15930 1.38093 1.30988 1.21394 0.95290 0.88002 0.97045 1.22225 1.01176 0.97153 1.02200 1.19240 0.96595 0.89875 0.81477 1.21438 1.36483 1.05308 0.93182 0.92596 1.24933 0.96205 0.98175 0.94815 1.69929 1.46609 1.36970 0.99858 0.86510 0.79629 0.82893 0.78450 1.20690 1.21082 1.19955 0.93137 0.92856 0.92604 0.91845 0.92413 0.91824 0.91806 0.91856 0.91343 0.91457 0.91726 0.82845 0.93142 0.88969 0.90050 0.91970 0.92275 0.93034 0.92022 0.95124 0.93911 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.77 37.16 0.36 -0.88 16 2 C -0.11 -1.03 5.06 -26.73 -0.14 -1.16 16 3 C -0.08 -0.87 2.72 -89.50 -0.24 -1.11 16 4 H 0.09 1.07 7.92 -51.93 -0.41 0.66 16 5 C -0.12 -1.06 5.54 -24.88 -0.14 -1.20 16 6 C -0.12 -1.18 6.94 -24.55 -0.17 -1.35 16 7 C -0.16 -1.58 6.19 -25.07 -0.16 -1.74 16 8 C 0.09 0.98 2.88 -66.60 -0.19 0.79 16 9 H 0.08 0.83 7.36 -51.93 -0.38 0.45 16 10 N -0.66 -9.74 5.73 -106.81 -0.61 -10.35 16 11 C 0.04 0.63 4.51 -4.97 -0.02 0.60 16 12 C 0.50 10.62 7.71 -10.99 -0.08 10.53 16 13 O -0.53 -13.60 15.78 5.55 0.09 -13.51 16 14 N -0.60 -12.77 2.46 -175.05 -0.43 -13.20 16 15 C 0.11 1.72 5.93 -4.04 -0.02 1.70 16 16 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 17 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 18 C -0.53 -15.03 9.39 -34.44 -0.32 -15.36 16 19 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 22 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.41 7.51 -51.92 -0.39 0.02 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.06 0.47 8.00 -51.93 -0.42 0.06 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.52 7.76 -51.93 -0.40 0.11 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 37 H 0.35 5.56 8.17 -39.29 -0.32 5.24 16 38 H 0.05 0.69 7.04 -51.93 -0.37 0.33 16 39 H 0.09 1.25 7.11 -51.93 -0.37 0.88 16 40 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.67 7.22 -51.93 -0.38 0.29 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 46 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -32.34 370.76 -9.26 -41.60 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.74 Total: 1.90 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.87 Total: -2.92 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.31 Total: -49.67 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.34 -9.26 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348152420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.659 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds