Wall clock time and date at job start Tue Mar 31 2020 05:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46653 * 2 1 4 4 H 1.08999 * 110.05700 * 53.58607 * 3 2 1 5 5 C 1.54370 * 110.04667 * 292.10862 * 3 2 1 6 6 C 1.54895 * 104.19618 * 217.09352 * 5 3 2 7 7 C 1.54888 * 102.74867 * 37.97170 * 6 5 3 8 8 C 1.53876 * 110.02723 * 175.00039 * 3 2 1 9 9 H 1.09009 * 110.02964 * 238.61428 * 8 3 2 10 10 N 1.46900 * 110.03376 * 359.97438 * 8 3 2 11 11 C 1.46902 * 110.99975 * 204.30925 * 10 8 3 12 12 C 1.52993 * 109.47459 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47381 * 180.02562 * 12 11 10 14 14 O 1.21276 * 120.00359 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99999 * 179.97438 * 13 12 11 16 16 C 1.46508 * 120.00109 * 0.02562 * 15 13 12 17 17 C 1.46495 * 120.00109 * 179.97438 * 15 13 12 18 18 C 1.50703 * 109.47395 * 270.00339 * 17 15 13 19 19 H 1.07994 * 119.99603 * 359.97438 * 18 17 15 20 20 C 1.37875 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31513 * 120.00380 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99776 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99769 * 22 20 18 26 26 H 1.09003 * 109.47163 * 60.00425 * 1 2 3 27 27 H 1.09003 * 109.47324 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47569 * 300.00128 * 1 2 3 29 29 H 1.08994 * 109.47453 * 240.00184 * 2 1 3 30 30 H 1.08994 * 109.47105 * 119.99779 * 2 1 3 31 31 H 1.08997 * 110.46558 * 98.42724 * 5 3 2 32 32 H 1.09005 * 110.62221 * 335.83501 * 5 3 2 33 33 H 1.08996 * 110.75332 * 279.65491 * 6 5 3 34 34 H 1.09001 * 110.75481 * 156.28416 * 6 5 3 35 35 H 1.08999 * 110.48763 * 203.38375 * 7 6 5 36 36 H 1.08998 * 110.48947 * 80.73388 * 7 6 5 37 37 H 1.00897 * 110.99924 * 80.35950 * 10 8 3 38 38 H 1.09003 * 109.46878 * 60.00024 * 11 10 8 39 39 H 1.09004 * 109.47142 * 300.00715 * 11 10 8 40 40 H 1.09003 * 109.47030 * 60.00149 * 12 11 10 41 41 H 1.09004 * 109.47553 * 300.00495 * 12 11 10 42 42 H 1.08989 * 109.47094 * 269.99954 * 16 15 13 43 43 H 1.09002 * 109.46932 * 29.99703 * 16 15 13 44 44 H 1.09000 * 109.47143 * 149.99439 * 16 15 13 45 45 H 1.09005 * 109.47411 * 150.00273 * 17 15 13 46 46 H 1.08998 * 109.46900 * 30.00352 * 17 15 13 47 47 H 0.97001 * 119.99667 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5914 1.9976 0.8240 5 6 1.7016 2.1234 -1.3435 6 6 2.9302 3.0207 -1.6346 7 6 4.1133 2.1501 -1.1434 8 6 3.5734 1.4595 0.1260 9 1 3.8690 2.0221 1.0116 10 7 4.0866 0.0856 0.2090 11 6 5.3908 0.0507 0.8843 12 6 5.8916 -1.3933 0.9522 13 6 7.2291 -1.4292 1.6455 14 8 7.7321 -0.4010 2.0464 15 7 7.8659 -2.6040 1.8210 16 6 7.2581 -3.8461 1.3372 17 6 9.1664 -2.6388 2.4945 18 6 10.2648 -2.4839 1.4744 19 1 10.0187 -2.3712 0.4289 20 6 11.5838 -2.4870 1.8758 21 7 11.8835 -2.6247 3.1489 22 14 12.9453 -2.2943 0.6115 23 1 12.3486 -2.1567 -0.7415 24 1 13.8248 -3.4904 0.6448 25 1 13.7450 -1.0831 0.9257 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 0.8008 2.7295 -1.2475 32 1 1.5777 1.3794 -2.1305 33 1 2.8728 3.9499 -1.0678 34 1 3.0165 3.2229 -2.7022 35 1 4.9724 2.7757 -0.9011 36 1 4.3802 1.4089 -1.8967 37 1 4.1421 -0.3356 -0.7062 38 1 5.2874 0.4469 1.8946 39 1 6.1047 0.6576 0.3274 40 1 5.9948 -1.7899 -0.0579 41 1 5.1775 -1.9999 1.5093 42 1 6.6349 -4.2752 2.1217 43 1 6.6449 -3.6335 0.4615 44 1 8.0424 -4.5538 1.0684 45 1 9.2825 -3.5913 3.0116 46 1 9.2235 -1.8242 3.2165 47 1 11.1765 -2.7244 3.8055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348179676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:14 Heat of formation + Delta-G solvation = -62.222752 kcal Electronic energy + Delta-G solvation = -22567.944538 eV Core-core repulsion = 19363.412242 eV Total energy + Delta-G solvation = -3204.532296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.53211 -38.92222 -35.27501 -34.71863 -33.18176 -32.84260 -30.60383 -27.74556 -27.62620 -26.57914 -25.45377 -23.30372 -22.81341 -21.80637 -21.01653 -19.30604 -18.43053 -16.94600 -16.56668 -16.12274 -15.75114 -15.31421 -15.08278 -14.62989 -14.25746 -13.87940 -13.73408 -13.62638 -13.27285 -13.05478 -12.78765 -12.41979 -12.24202 -12.05377 -11.97755 -11.67803 -11.66084 -11.40237 -11.29415 -11.21156 -10.96984 -10.89615 -10.88329 -10.69601 -10.55548 -10.52450 -10.42473 -10.13967 -9.12422 -8.97589 -8.39392 -8.38206 -7.61231 -6.38707 -4.10584 3.37973 3.43241 3.47862 3.60337 3.75243 4.22776 4.38477 4.45564 4.53458 4.68697 4.99350 5.09688 5.13423 5.17305 5.22307 5.29975 5.31699 5.37091 5.39599 5.40436 5.44608 5.57318 5.61855 5.67572 5.70602 5.80464 5.81985 5.85668 5.88090 5.96470 6.01827 6.07423 6.13458 6.15836 6.17020 6.28382 6.41464 6.81422 7.01794 7.13424 7.33042 7.41002 8.04345 8.30219 8.44227 8.78146 9.02945 9.59442 10.98767 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026201 B = 0.003071 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.411142 B = 9115.429213 C = 9724.855691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.099 4.099 3 C -0.083 4.083 4 H 0.070 0.930 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.154 4.154 8 C 0.086 3.914 9 H 0.079 0.921 10 N -0.680 5.680 11 C 0.074 3.926 12 C -0.135 4.135 13 C 0.505 3.495 14 O -0.545 6.545 15 N -0.600 5.600 16 C 0.085 3.915 17 C 0.234 3.766 18 C -0.605 4.605 19 H 0.051 0.949 20 C 0.018 3.982 21 N -0.911 5.911 22 Si 1.078 2.922 23 H -0.290 1.290 24 H -0.286 1.286 25 H -0.286 1.286 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.338 0.662 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.021 0.979 46 H 0.033 0.967 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.363 4.771 -9.134 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.137 4.137 3 C -0.102 4.102 4 H 0.088 0.912 5 C -0.158 4.158 6 C -0.161 4.161 7 C -0.193 4.193 8 C -0.024 4.024 9 H 0.098 0.902 10 N -0.310 5.310 11 C -0.055 4.055 12 C -0.175 4.175 13 C 0.291 3.709 14 O -0.423 6.423 15 N -0.332 5.332 16 C -0.059 4.059 17 C 0.114 3.886 18 C -0.644 4.644 19 H 0.069 0.931 20 C -0.186 4.186 21 N -0.547 5.547 22 Si 0.906 3.094 23 H -0.216 1.216 24 H -0.213 1.213 25 H -0.212 1.212 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.156 0.844 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.039 0.961 46 H 0.051 0.949 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.778 5.202 -8.497 23.043 hybrid contribution -1.027 0.168 -0.612 1.208 sum -21.806 5.370 -9.109 24.234 Atomic orbital electron populations 1.21869 0.97141 1.01114 1.01182 1.21325 0.93665 0.95595 1.03075 1.21843 0.94236 0.96956 0.97156 0.91187 1.22494 0.97532 0.98444 0.97304 1.22427 0.94884 0.98180 1.00649 1.23120 0.98363 0.99716 0.98107 1.22238 0.94412 0.88531 0.97238 0.90242 1.60709 1.26869 1.18050 1.25385 1.21681 0.88604 0.95272 0.99961 1.21592 0.95522 0.98710 1.01718 1.20336 0.86358 0.83785 0.80401 1.90661 1.68092 1.32631 1.50965 1.47964 1.21717 1.05756 1.57768 1.21632 0.98383 0.87719 0.98185 1.19337 0.78889 0.96851 0.93498 1.22302 0.92595 1.54860 0.94667 0.93050 1.25824 0.99191 0.93762 0.99789 1.70739 1.36809 1.45978 1.01200 0.83427 0.74933 0.76964 0.74088 1.21638 1.21274 1.21201 0.93283 0.93161 0.93217 0.92416 0.90445 0.92008 0.91612 0.91572 0.91828 0.91621 0.91551 0.84364 0.90384 0.94340 0.89799 0.88884 0.93709 0.92212 0.90916 0.96129 0.94882 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.77 37.16 0.36 -0.81 16 2 C -0.10 -0.84 4.30 -26.73 -0.11 -0.96 16 3 C -0.08 -0.71 2.93 -89.44 -0.26 -0.97 16 4 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 5 C -0.12 -0.92 5.54 -25.01 -0.14 -1.05 16 6 C -0.12 -0.99 6.91 -24.74 -0.17 -1.16 16 7 C -0.15 -1.45 6.43 -25.07 -0.16 -1.61 16 8 C 0.09 0.86 3.20 -66.59 -0.21 0.65 16 9 H 0.08 0.88 7.82 -51.92 -0.41 0.48 16 10 N -0.68 -7.29 4.35 -105.54 -0.46 -7.75 16 11 C 0.07 1.03 4.80 -3.83 -0.02 1.01 16 12 C -0.13 -1.97 4.51 -27.89 -0.13 -2.10 16 13 C 0.50 10.61 7.67 -10.99 -0.08 10.52 16 14 O -0.55 -13.91 15.56 5.56 0.09 -13.83 16 15 N -0.60 -13.00 2.86 -182.95 -0.52 -13.52 16 16 C 0.08 1.36 10.24 59.85 0.61 1.98 16 17 C 0.23 6.23 4.47 -5.19 -0.02 6.20 16 18 C -0.61 -17.65 9.39 -34.44 -0.32 -17.97 16 19 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 20 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 21 N -0.91 -28.16 13.65 55.43 0.76 -27.40 16 22 Si 1.08 26.01 29.90 -169.99 -5.08 20.93 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H 0.05 0.35 7.51 -51.93 -0.39 -0.04 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.50 7.62 -51.93 -0.40 0.10 16 30 H 0.08 0.77 7.58 -51.93 -0.39 0.38 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.50 7.77 -51.93 -0.40 0.10 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.63 7.57 -51.93 -0.39 0.23 16 37 H 0.34 3.31 7.79 -39.29 -0.31 3.01 16 38 H 0.08 1.21 8.02 -51.93 -0.42 0.79 16 39 H 0.04 0.60 8.08 -51.93 -0.42 0.18 16 40 H 0.08 1.08 7.40 -51.93 -0.38 0.70 16 41 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 42 H 0.04 0.62 8.14 -51.94 -0.42 0.20 16 43 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.02 0.55 7.94 -51.93 -0.41 0.13 16 46 H 0.03 0.98 7.29 -51.93 -0.38 0.60 16 47 H 0.27 8.24 7.22 -40.82 -0.29 7.94 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -33.22 368.45 -9.18 -42.40 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.76 Total: -0.55 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.76 Total: -5.82 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.23 Total: -48.68 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.08 Total: 20.93 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.22 -9.18 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348179676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.820 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds