Wall clock time and date at job start Tue Mar 31 2020 05:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47332 * 2 1 4 4 H 1.08993 * 110.05522 * 304.86045 * 3 2 1 5 5 C 1.54270 * 110.03118 * 66.27471 * 3 2 1 6 6 C 1.54884 * 104.19582 * 142.89451 * 5 3 2 7 7 C 1.54898 * 102.74946 * 322.05917 * 6 5 3 8 8 C 1.53869 * 110.03284 * 183.44050 * 3 2 1 9 9 H 1.09000 * 110.07138 * 121.40859 * 8 3 2 10 10 N 1.46896 * 110.03287 * 0.02562 * 8 3 2 11 11 C 1.46908 * 111.00372 * 169.20579 * 10 8 3 12 12 C 1.52992 * 109.47555 * 180.02562 * 11 10 8 13 13 C 1.50692 * 109.47265 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00125 * 0.02562 * 13 12 11 15 15 N 1.34782 * 120.00245 * 179.97438 * 13 12 11 16 16 C 1.46505 * 119.99704 * 0.02562 * 15 13 12 17 17 C 1.46502 * 119.99988 * 179.97438 * 15 13 12 18 18 C 1.50697 * 109.47109 * 269.99811 * 17 15 13 19 19 H 1.08004 * 120.00138 * 0.02562 * 18 17 15 20 20 C 1.37879 * 120.00046 * 180.02562 * 18 17 15 21 21 N 1.31512 * 119.99755 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47123 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47043 * 300.00245 * 22 20 18 25 25 H 1.48497 * 109.47007 * 60.00118 * 22 20 18 26 26 H 1.09002 * 109.47331 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47083 * 299.99819 * 1 2 3 28 28 H 1.08995 * 109.47303 * 59.99961 * 1 2 3 29 29 H 1.09004 * 109.47037 * 239.99674 * 2 1 3 30 30 H 1.09004 * 109.46777 * 120.00277 * 2 1 3 31 31 H 1.09001 * 110.48408 * 24.21825 * 5 3 2 32 32 H 1.08996 * 110.59836 * 261.63321 * 5 3 2 33 33 H 1.08999 * 110.76091 * 203.74431 * 6 5 3 34 34 H 1.09000 * 110.91568 * 80.44653 * 6 5 3 35 35 H 1.09004 * 110.48265 * 279.26224 * 7 6 5 36 36 H 1.09001 * 110.48443 * 156.62280 * 7 6 5 37 37 H 1.00903 * 111.00099 * 45.25497 * 10 8 3 38 38 H 1.09002 * 109.46889 * 59.99763 * 11 10 8 39 39 H 1.09000 * 109.46491 * 300.00148 * 11 10 8 40 40 H 1.09001 * 109.47148 * 59.99392 * 12 11 10 41 41 H 1.09007 * 109.46992 * 299.99824 * 12 11 10 42 42 H 1.09002 * 109.47006 * 269.99870 * 16 15 13 43 43 H 1.08997 * 109.47257 * 29.99833 * 16 15 13 44 44 H 1.09002 * 109.46717 * 149.99747 * 16 15 13 45 45 H 1.09002 * 109.46797 * 150.00188 * 17 15 13 46 46 H 1.08991 * 109.46961 * 30.00181 * 17 15 13 47 47 H 0.97003 * 119.99833 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6129 1.9899 -0.8401 5 6 1.6664 2.1351 1.3269 6 6 2.8869 3.0348 1.6425 7 6 4.0826 2.1600 1.1903 8 6 3.5762 1.4584 -0.0868 9 1 3.8953 2.0131 -0.9691 10 7 4.0912 0.0838 -0.1441 11 6 5.5207 0.0708 -0.4827 12 6 6.0197 -1.3745 -0.5336 13 6 7.4861 -1.3878 -0.8803 14 8 8.0744 -0.3439 -1.0678 15 7 8.1443 -2.5596 -0.9811 16 6 7.4338 -3.8206 -0.7541 17 6 9.5698 -2.5725 -1.3187 18 6 9.7309 -2.6422 -2.8155 19 1 8.8587 -2.6734 -3.4516 20 6 10.9919 -2.6662 -3.3727 21 7 12.0539 -2.6287 -2.5981 22 14 11.1916 -2.7519 -5.2281 23 1 12.6365 -2.7662 -5.5702 24 1 10.5502 -3.9902 -5.7383 25 1 10.5467 -1.5678 -5.8505 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5229 1.3964 2.1155 32 1 0.7681 2.7400 1.2040 33 1 2.9451 3.2464 2.7102 34 1 2.8467 3.9606 1.0685 35 1 4.3292 1.4255 1.9570 36 1 4.9479 2.7835 0.9656 37 1 3.5602 -0.4744 -0.7957 38 1 6.0785 0.6218 0.2746 39 1 5.6678 0.5401 -1.4555 40 1 5.4618 -1.9251 -1.2911 41 1 5.8724 -1.8442 0.4390 42 1 7.4939 -4.0866 0.3013 43 1 6.3886 -3.7055 -1.0408 44 1 7.8905 -4.6079 -1.3538 45 1 10.0437 -3.4411 -0.8615 46 1 10.0400 -1.6631 -0.9446 47 1 12.9410 -2.6460 -2.9901 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348179677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:17 Heat of formation + Delta-G solvation = -55.161784 kcal Electronic energy + Delta-G solvation = -22542.506490 eV Core-core repulsion = 19338.280381 eV Total energy + Delta-G solvation = -3204.226110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.51066 -38.82640 -35.14978 -34.59421 -33.30552 -32.61012 -30.59668 -27.89836 -27.72627 -26.53824 -25.57911 -23.43368 -23.02734 -21.66066 -20.64396 -19.11418 -18.22617 -16.55277 -16.36006 -16.10513 -15.96621 -15.26023 -15.08355 -14.85336 -14.47758 -14.20627 -13.85659 -13.45947 -13.28564 -12.69292 -12.59459 -12.29237 -12.16360 -11.92357 -11.88084 -11.70675 -11.50969 -11.23595 -11.18218 -11.11965 -11.02795 -10.87265 -10.80307 -10.69130 -10.62370 -10.51560 -10.49462 -10.14642 -9.62807 -8.85510 -8.42250 -8.40716 -7.60569 -6.03023 -4.07903 3.32058 3.36418 3.38567 3.49902 3.84129 4.29874 4.38776 4.43297 4.47489 4.67869 5.02569 5.04346 5.13881 5.21166 5.25981 5.30701 5.36486 5.38624 5.41114 5.44888 5.50846 5.58263 5.65224 5.71550 5.77523 5.85360 5.87064 5.90209 5.94372 5.96199 6.02408 6.09264 6.15128 6.18986 6.24704 6.28406 6.29890 7.06996 7.08701 7.38649 7.47040 7.57264 7.93480 8.25305 8.46166 8.91703 9.13770 9.57105 11.05034 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026590 B = 0.002978 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.774577 B = 9399.625225 C = 9569.918086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.090 4.090 4 H 0.068 0.932 5 C -0.113 4.113 6 C -0.126 4.126 7 C -0.116 4.116 8 C 0.086 3.914 9 H 0.041 0.959 10 N -0.685 5.685 11 C 0.073 3.927 12 C -0.136 4.136 13 C 0.504 3.496 14 O -0.545 6.545 15 N -0.604 5.604 16 C 0.084 3.916 17 C 0.245 3.755 18 C -0.527 4.527 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.286 1.286 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.339 0.661 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.506 4.690 7.775 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.109 4.109 4 H 0.086 0.914 5 C -0.151 4.151 6 C -0.164 4.164 7 C -0.154 4.154 8 C -0.024 4.024 9 H 0.059 0.941 10 N -0.319 5.319 11 C -0.056 4.056 12 C -0.176 4.176 13 C 0.290 3.710 14 O -0.423 6.423 15 N -0.336 5.336 16 C -0.060 4.060 17 C 0.126 3.874 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.211 1.211 24 H -0.203 1.203 25 H -0.202 1.202 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.846 5.173 8.333 23.947 hybrid contribution 0.216 0.000 -2.101 2.112 sum -21.630 5.173 6.232 23.097 Atomic orbital electron populations 1.21824 0.96391 1.01378 1.01499 1.21501 0.94814 0.95915 1.02680 1.21889 0.94201 0.96664 0.98104 0.91373 1.22380 0.97476 0.98311 0.96911 1.22467 0.95069 0.98004 1.00821 1.22431 0.97336 0.98265 0.97355 1.22137 0.93708 0.89149 0.97434 0.94124 1.60849 1.03429 1.11515 1.56060 1.21678 0.87800 0.95721 1.00430 1.21599 0.94312 0.98371 1.03334 1.20308 0.88535 0.84119 0.78014 1.90663 1.69357 1.31648 1.50681 1.48165 1.12944 1.04699 1.67805 1.21628 0.96498 0.87706 1.00149 1.19269 0.74055 0.98411 0.95712 1.21404 0.92289 1.50954 0.91898 0.92598 1.24942 0.95702 0.95115 0.98384 1.69925 0.98028 1.50369 1.35107 0.86556 0.76966 0.78587 0.85291 1.21148 1.20254 1.20207 0.92926 0.92788 0.93201 0.92246 0.90485 0.91301 0.92135 0.91636 0.91828 0.90334 0.91996 0.84038 0.90252 0.94512 0.89907 0.88923 0.93754 0.92420 0.90909 0.95061 0.93882 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.75 37.16 0.36 -0.70 16 2 C -0.11 -0.89 4.17 -26.73 -0.11 -1.00 16 3 C -0.09 -0.77 2.95 -89.50 -0.26 -1.03 16 4 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 5 C -0.11 -0.89 5.46 -25.07 -0.14 -1.03 16 6 C -0.13 -1.06 6.91 -24.74 -0.17 -1.23 16 7 C -0.12 -1.20 5.77 -25.07 -0.14 -1.35 16 8 C 0.09 0.90 3.21 -66.60 -0.21 0.69 16 9 H 0.04 0.47 8.05 -51.93 -0.42 0.05 16 10 N -0.68 -7.69 5.39 -105.55 -0.57 -8.26 16 11 C 0.07 1.05 4.80 -3.82 -0.02 1.03 16 12 C -0.14 -2.01 4.51 -27.89 -0.13 -2.14 16 13 C 0.50 10.62 7.67 -10.99 -0.08 10.53 16 14 O -0.55 -13.95 15.56 5.56 0.09 -13.86 16 15 N -0.60 -13.06 2.86 -182.95 -0.52 -13.58 16 16 C 0.08 1.35 10.24 59.85 0.61 1.96 16 17 C 0.24 6.55 5.16 -5.19 -0.03 6.52 16 18 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 19 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 22 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.36 7.45 -51.93 -0.39 -0.03 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.47 6.42 -51.93 -0.33 0.14 16 30 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 31 H 0.07 0.55 7.79 -51.93 -0.40 0.15 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.34 3.42 6.15 -39.29 -0.24 3.18 16 38 H 0.08 1.26 7.55 -51.93 -0.39 0.86 16 39 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.08 1.08 7.40 -51.93 -0.38 0.70 16 41 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 44 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 45 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 46 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -32.57 367.55 -9.20 -41.78 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.71 Total: -0.83 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.74 Total: -1.61 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.36 Total: -48.09 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.57 -9.20 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348179677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.383 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds