Wall clock time and date at job start Tue Mar 31 2020 05:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47027 * 2 1 4 4 H 1.08998 * 110.53954 * 307.61194 * 3 2 1 5 5 C 1.54892 * 110.48750 * 70.21967 * 3 2 1 6 6 C 1.54889 * 102.74772 * 156.62069 * 5 3 2 7 7 C 1.54266 * 104.19712 * 322.05838 * 6 5 3 8 8 C 1.53877 * 106.59779 * 23.60840 * 7 6 5 9 9 H 1.08995 * 110.03468 * 240.66465 * 8 7 6 10 10 N 1.46901 * 110.03223 * 119.28275 * 8 7 6 11 11 C 1.46904 * 110.99923 * 86.45129 * 10 8 7 12 12 C 1.52997 * 109.47076 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47106 * 180.02562 * 12 11 10 14 14 O 1.21284 * 120.00064 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00310 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99658 * 0.02562 * 15 13 12 17 17 C 1.46493 * 120.00107 * 179.97438 * 15 13 12 18 18 C 1.50706 * 109.47128 * 90.00402 * 17 15 13 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 15 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 15 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47483 * 269.99808 * 22 20 18 24 24 H 1.48499 * 109.47134 * 30.00322 * 22 20 18 25 25 H 1.48507 * 109.46904 * 150.00145 * 22 20 18 26 26 H 1.09007 * 109.46953 * 60.00641 * 1 2 3 27 27 H 1.09010 * 109.47218 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47768 * 300.00551 * 1 2 3 29 29 H 1.08997 * 109.47138 * 239.99858 * 2 1 3 30 30 H 1.08998 * 109.47084 * 119.99467 * 2 1 3 31 31 H 1.09002 * 110.75148 * 38.30478 * 5 3 2 32 32 H 1.09000 * 110.75807 * 274.94189 * 5 3 2 33 33 H 1.08995 * 110.48464 * 203.38203 * 6 5 3 34 34 H 1.08993 * 110.48739 * 80.73791 * 6 5 3 35 35 H 1.08999 * 110.03394 * 264.32810 * 7 6 5 36 36 H 1.09000 * 110.03023 * 142.89109 * 7 6 5 37 37 H 1.00894 * 111.00289 * 210.41306 * 10 8 7 38 38 H 1.08999 * 109.46829 * 60.00383 * 11 10 8 39 39 H 1.08997 * 109.47598 * 300.00452 * 11 10 8 40 40 H 1.08999 * 109.47026 * 60.00445 * 12 11 10 41 41 H 1.09004 * 109.47166 * 300.00211 * 12 11 10 42 42 H 1.09009 * 109.46709 * 269.99707 * 16 15 13 43 43 H 1.08998 * 109.47569 * 29.99343 * 16 15 13 44 44 H 1.08997 * 109.47185 * 150.00014 * 16 15 13 45 45 H 1.09001 * 109.47786 * 330.00675 * 17 15 13 46 46 H 1.09006 * 109.47401 * 210.00260 * 17 15 13 47 47 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0107 -0.8086 5 6 1.7577 2.1173 1.3653 6 6 2.8151 3.2481 1.4128 7 6 4.0701 2.6197 0.7724 8 6 3.5772 1.4717 -0.1258 9 1 3.9983 0.5252 0.2131 10 7 3.9631 1.7229 -1.5208 11 6 5.3163 1.2191 -1.7915 12 6 5.6822 1.4989 -3.2505 13 6 7.0700 0.9815 -3.5284 14 8 7.7038 0.4416 -2.6465 15 7 7.6065 1.1177 -4.7573 16 6 6.8407 1.7694 -5.8227 17 6 8.9558 0.6152 -5.0273 18 6 8.8748 -0.8145 -5.4968 19 1 7.9142 -1.3004 -5.5848 20 6 10.0269 -1.5023 -5.8139 21 7 11.1966 -0.9109 -5.7063 22 14 9.9264 -3.2748 -6.3952 23 1 10.0017 -4.1848 -5.2241 24 1 8.6413 -3.4900 -7.1075 25 1 11.0564 -3.5585 -7.3160 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.9088 1.4125 2.1830 32 1 0.7492 2.5300 1.3911 33 1 3.0175 3.5381 2.4438 34 1 2.4805 4.1078 0.8324 35 1 4.7297 2.2302 1.5478 36 1 4.5956 3.3633 0.1733 37 1 3.2932 1.3212 -2.1593 38 1 5.3474 0.1450 -1.6084 39 1 6.0285 1.7202 -1.1361 40 1 5.6512 2.5730 -3.4333 41 1 4.9699 0.9980 -3.9063 42 1 6.2568 1.0218 -6.3598 43 1 6.1700 2.5101 -5.3873 44 1 7.5254 2.2609 -6.5139 45 1 9.5514 0.6650 -4.1157 46 1 9.4230 1.2255 -5.8003 47 1 11.2487 0.0094 -5.4041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348179679.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:20 Heat of formation + Delta-G solvation = -67.111998 kcal Electronic energy + Delta-G solvation = -22423.453944 eV Core-core repulsion = 19218.709634 eV Total energy + Delta-G solvation = -3204.744310 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.43194 -38.89918 -35.34618 -34.76277 -33.32969 -32.84105 -30.60319 -27.84292 -27.62859 -26.63551 -25.49015 -23.41736 -22.71863 -21.97185 -20.23640 -19.88867 -18.49130 -16.95508 -16.56250 -16.34691 -15.49924 -15.38696 -14.96646 -14.87733 -14.24068 -14.13312 -13.72442 -13.43400 -13.26043 -13.17417 -12.90699 -12.36249 -12.29248 -12.14209 -11.97038 -11.83189 -11.63924 -11.40735 -11.22787 -11.07102 -11.04455 -10.90297 -10.80817 -10.77311 -10.66013 -10.57721 -10.53421 -10.11969 -9.12392 -8.97659 -8.47897 -8.37723 -7.61018 -6.38225 -4.09848 3.37611 3.44154 3.47357 3.62107 3.74653 4.23018 4.30561 4.39875 4.54095 4.64032 4.92678 4.99122 5.07480 5.13980 5.18377 5.28900 5.31048 5.33690 5.37943 5.39968 5.46827 5.53418 5.55751 5.65534 5.73271 5.75572 5.78754 5.84413 5.87903 5.89919 5.94295 6.00991 6.10252 6.13434 6.13787 6.19489 6.23606 6.81022 7.02994 7.12998 7.34032 7.41169 8.04806 8.29725 8.44112 8.78443 9.02771 9.59958 10.99298 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023664 B = 0.003006 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.970851 B = 9312.822794 C = 9776.741574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.083 0.917 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.117 4.117 8 C 0.086 3.914 9 H 0.048 0.952 10 N -0.685 5.685 11 C 0.075 3.925 12 C -0.135 4.135 13 C 0.505 3.495 14 O -0.545 6.545 15 N -0.600 5.600 16 C 0.087 3.913 17 C 0.234 3.766 18 C -0.605 4.605 19 H 0.050 0.950 20 C 0.018 3.982 21 N -0.911 5.911 22 Si 1.075 2.925 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.283 1.283 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.337 0.663 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.033 0.967 46 H 0.021 0.979 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.456 7.780 9.928 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.113 4.113 4 H 0.102 0.898 5 C -0.154 4.154 6 C -0.159 4.159 7 C -0.156 4.156 8 C -0.024 4.024 9 H 0.066 0.934 10 N -0.316 5.316 11 C -0.054 4.054 12 C -0.176 4.176 13 C 0.291 3.709 14 O -0.423 6.423 15 N -0.332 5.332 16 C -0.057 4.057 17 C 0.115 3.885 18 C -0.644 4.644 19 H 0.069 0.931 20 C -0.186 4.186 21 N -0.547 5.547 22 Si 0.903 3.097 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.209 1.209 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.155 0.845 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.051 0.949 46 H 0.039 0.961 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.956 6.848 9.990 23.344 hybrid contribution -1.101 0.319 0.254 1.174 sum -21.057 7.167 10.244 24.489 Atomic orbital electron populations 1.21765 0.95707 1.01497 1.01816 1.21610 0.96041 0.96116 1.02028 1.22224 0.94560 0.95978 0.98511 0.89845 1.22513 0.98768 0.97533 0.96626 1.22311 0.95387 0.97953 1.00258 1.22203 0.97412 0.97937 0.98002 1.22221 0.94132 0.97199 0.88833 0.93403 1.60685 1.03742 1.63367 1.03781 1.21689 0.89878 0.98390 0.95475 1.21599 0.95340 1.02892 0.97736 1.20321 0.87918 0.79976 0.82643 1.90665 1.63012 1.43796 1.44837 1.47958 1.18464 1.57459 1.09338 1.21623 0.96282 0.96631 0.91211 1.19354 0.78007 0.94809 0.96379 1.22271 0.95569 0.97762 1.48793 0.93118 1.25824 0.92005 1.05738 0.94989 1.70771 1.25364 1.14608 1.43941 0.83465 0.75280 0.74339 0.76630 1.21366 1.21556 1.20883 0.92743 0.92913 0.92664 0.92161 0.91930 0.91567 0.91679 0.92017 0.91599 0.92238 0.90546 0.84515 0.94360 0.90314 0.88829 0.89780 0.93196 0.92242 0.91574 0.94898 0.96113 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.79 37.16 0.36 -0.67 16 2 C -0.12 -0.96 5.28 -26.73 -0.14 -1.10 16 3 C -0.09 -0.79 2.28 -88.96 -0.20 -0.99 16 4 H 0.08 0.72 7.98 -51.93 -0.41 0.30 16 5 C -0.12 -0.89 5.67 -24.74 -0.14 -1.03 16 6 C -0.12 -1.01 6.83 -25.07 -0.17 -1.18 16 7 C -0.12 -1.19 6.48 -25.61 -0.17 -1.36 16 8 C 0.09 0.90 2.81 -66.59 -0.19 0.71 16 9 H 0.05 0.56 7.53 -51.93 -0.39 0.17 16 10 N -0.68 -7.75 6.15 -105.54 -0.65 -8.40 16 11 C 0.07 1.08 4.80 -3.82 -0.02 1.06 16 12 C -0.14 -2.01 4.51 -27.89 -0.13 -2.14 16 13 C 0.51 10.69 7.67 -10.98 -0.08 10.61 16 14 O -0.55 -14.00 15.56 5.55 0.09 -13.91 16 15 N -0.60 -13.08 2.86 -182.95 -0.52 -13.60 16 16 C 0.09 1.40 10.28 59.85 0.62 2.02 16 17 C 0.23 6.26 4.52 -5.19 -0.02 6.23 16 18 C -0.61 -17.74 9.39 -34.44 -0.32 -18.06 16 19 H 0.05 1.50 7.81 -52.48 -0.41 1.09 16 20 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 21 N -0.91 -28.23 13.65 55.43 0.76 -27.47 16 22 Si 1.07 26.04 29.90 -169.99 -5.08 20.95 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 28 H 0.05 0.35 7.55 -51.93 -0.39 -0.04 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.51 8.02 -51.93 -0.42 0.10 16 31 H 0.07 0.50 7.97 -51.93 -0.41 0.09 16 32 H 0.06 0.44 8.06 -51.93 -0.42 0.02 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 37 H 0.34 3.42 8.35 -39.29 -0.33 3.09 16 38 H 0.04 0.62 8.02 -51.93 -0.42 0.20 16 39 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 40 H 0.09 1.23 7.40 -51.93 -0.38 0.84 16 41 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 42 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 43 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 44 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 45 H 0.03 0.98 7.29 -51.93 -0.38 0.60 16 46 H 0.02 0.55 7.76 -51.93 -0.40 0.15 16 47 H 0.27 8.24 7.22 -40.82 -0.29 7.94 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -33.68 371.60 -9.33 -43.01 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.81 Total: -0.72 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.70 Total: -5.45 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.42 Total: -49.48 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.68 -9.33 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348179679.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.105 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds