Wall clock time and date at job start Tue Mar 31 2020 06:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47144 * 2 1 4 4 N 1.46500 * 109.47551 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99748 * 94.88511 * 4 3 2 6 6 H 1.07997 * 120.00662 * 339.49689 * 5 4 3 7 7 C 1.38814 * 119.99280 * 159.21824 * 5 4 3 8 8 N 1.31625 * 120.00495 * 354.96653 * 7 5 4 9 9 Si 1.86807 * 119.99782 * 174.97173 * 7 5 4 10 10 H 1.48496 * 109.46859 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47303 * 119.99865 * 9 7 5 12 12 H 1.48503 * 109.46720 * 239.99926 * 9 7 5 13 13 C 1.46493 * 119.99728 * 274.89020 * 4 3 2 14 14 C 1.50699 * 109.47492 * 269.99692 * 13 4 3 15 15 O 1.21280 * 119.99706 * 0.02562 * 14 13 4 16 16 N 1.34775 * 120.00000 * 180.02562 * 14 13 4 17 17 C 1.46926 * 120.63290 * 355.26032 * 16 14 13 18 18 C 1.53194 * 108.77476 * 126.37345 * 17 16 14 19 19 C 1.53034 * 109.31277 * 54.63430 * 18 17 16 20 20 C 1.53044 * 109.53950 * 298.63336 * 19 18 17 21 21 C 1.46934 * 120.62759 * 174.98485 * 16 14 13 22 22 H 1.08998 * 109.58717 * 113.84212 * 21 16 14 23 23 C 1.52998 * 109.58589 * 353.41459 * 21 16 14 24 24 C 1.52997 * 109.46954 * 182.88791 * 23 21 16 25 25 H 1.08999 * 109.47310 * 300.00573 * 1 2 3 26 26 H 1.08998 * 109.47279 * 60.00234 * 1 2 3 27 27 H 1.09001 * 109.46713 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47463 * 239.99868 * 2 1 3 29 29 H 1.09007 * 109.47118 * 119.99551 * 2 1 3 30 30 H 1.08999 * 109.47485 * 59.99534 * 3 2 1 31 31 H 1.09007 * 109.46747 * 299.99778 * 3 2 1 32 32 H 0.97000 * 119.99956 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.47511 * 30.00186 * 13 4 3 34 34 H 1.09005 * 109.47301 * 149.99612 * 13 4 3 35 35 H 1.09004 * 109.58407 * 246.15536 * 17 16 14 36 36 H 1.08992 * 109.58681 * 6.58276 * 17 16 14 37 37 H 1.09000 * 109.49521 * 174.58719 * 18 17 16 38 38 H 1.09001 * 109.49500 * 294.68416 * 18 17 16 39 39 H 1.09004 * 109.46146 * 58.65713 * 19 18 17 40 40 H 1.09007 * 109.45946 * 178.63247 * 19 18 17 41 41 H 1.09003 * 109.49774 * 181.31759 * 20 19 18 42 42 H 1.09001 * 109.49801 * 301.38071 * 20 19 18 43 43 H 1.09003 * 109.47079 * 302.88938 * 23 21 16 44 44 H 1.09001 * 109.47451 * 62.88271 * 23 21 16 45 45 H 1.09004 * 109.46983 * 305.29585 * 24 23 21 46 46 H 1.08996 * 109.47310 * 65.29843 * 24 23 21 47 47 H 1.09004 * 109.47022 * 185.30109 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1901 1.5435 -1.1807 6 1 3.7019 1.2941 -2.1112 7 6 5.5105 1.9719 -1.1828 8 7 6.0733 2.3754 -0.0634 9 14 6.4887 1.9759 -2.7743 10 1 5.6335 1.4792 -3.8820 11 1 6.9369 3.3590 -3.0763 12 1 7.6732 1.0921 -2.6293 13 6 4.2369 1.3347 1.2650 14 6 4.4878 2.7133 1.8195 15 8 4.0936 3.6898 1.2180 16 7 5.1503 2.8610 2.9839 17 6 5.5431 1.6874 3.7759 18 6 7.0468 1.7639 4.0581 19 6 7.3700 3.1055 4.7197 20 6 6.9980 4.2471 3.7707 21 6 5.4987 4.1986 3.4825 22 1 4.9463 4.4019 4.3999 23 6 5.1473 5.2475 2.4255 24 6 5.5769 6.6310 2.9175 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 6.9958 2.6751 -0.0650 33 1 3.6475 0.7580 1.9780 34 1 5.1894 0.8338 1.0919 35 1 4.9943 1.6819 4.7177 36 1 5.3220 0.7785 3.2165 37 1 7.3336 0.9509 4.7250 38 1 7.5976 1.6782 3.1214 39 1 6.8000 3.2013 5.6440 40 1 8.4358 3.1525 4.9438 41 1 7.2501 5.2014 4.2331 42 1 7.5497 4.1383 2.8369 43 1 5.6669 5.0148 1.4960 44 1 4.0713 5.2417 2.2514 45 1 5.1306 6.8245 3.8930 46 1 6.6631 6.6656 3.0016 47 1 5.2430 7.3886 2.2085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350631568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:10 Heat of formation + Delta-G solvation = -11.652259 kcal Electronic energy + Delta-G solvation = -24682.708804 eV Core-core repulsion = 21480.369409 eV Total energy + Delta-G solvation = -3202.339395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.41990 -36.75443 -35.35999 -33.63090 -32.80897 -31.89859 -30.44013 -28.86512 -27.16083 -25.47706 -24.27620 -23.53300 -22.10083 -20.59847 -20.46269 -19.89194 -18.04720 -16.65295 -15.70443 -15.17334 -14.89953 -14.35256 -14.23823 -14.02260 -13.89651 -13.67815 -13.11422 -13.09909 -12.83721 -12.51579 -12.41726 -12.20178 -11.92982 -11.45833 -11.33956 -11.23210 -11.07009 -10.87752 -10.74944 -10.69900 -10.63513 -10.50344 -10.24310 -10.18275 -10.10447 -9.95252 -9.86677 -9.78849 -9.65002 -8.59517 -7.67223 -7.44098 -6.64212 -5.72267 -3.11180 3.40590 3.48234 3.49538 4.03946 4.40119 4.62673 5.16076 5.23111 5.28773 5.42975 5.50711 5.55521 5.65442 5.65927 5.76368 5.77804 5.83062 5.94276 5.99009 6.06084 6.08616 6.11848 6.18719 6.28697 6.29265 6.31435 6.39679 6.43446 6.47082 6.53440 6.54699 6.62776 6.63688 6.75841 6.84193 6.95726 7.10267 7.18169 7.30322 7.35137 7.76642 7.80954 8.39773 8.76422 9.26959 9.83694 10.03286 10.36768 11.36083 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.007061 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.162473 B = 3964.760540 C = 4755.407744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.152 3.848 4 N -0.577 5.577 5 C -0.241 4.241 6 H 0.072 0.928 7 C 0.003 3.997 8 N -0.902 5.902 9 Si 0.910 3.090 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C 0.173 3.827 14 C 0.543 3.457 15 O -0.527 6.527 16 N -0.626 5.626 17 C 0.121 3.879 18 C -0.134 4.134 19 C -0.114 4.114 20 C -0.130 4.130 21 C 0.159 3.841 22 H 0.045 0.955 23 C -0.108 4.108 24 C -0.158 4.158 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.251 0.749 33 H 0.024 0.976 34 H 0.100 0.900 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.045 0.955 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -1.168 9.886 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C 0.025 3.975 4 N -0.296 5.296 5 C -0.370 4.370 6 H 0.090 0.910 7 C -0.194 4.194 8 N -0.549 5.549 9 Si 0.741 3.259 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.043 3.957 14 C 0.332 3.668 15 O -0.401 6.401 16 N -0.364 5.364 17 C -0.003 4.003 18 C -0.173 4.173 19 C -0.152 4.152 20 C -0.168 4.168 21 C 0.054 3.946 22 H 0.063 0.937 23 C -0.146 4.146 24 C -0.216 4.216 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.968 -0.593 9.477 9.545 hybrid contribution 0.974 0.154 -0.680 1.198 sum 0.006 -0.438 8.796 8.807 Atomic orbital electron populations 1.21716 0.97255 1.00359 1.01118 1.22138 0.93831 1.00939 1.01418 1.20781 0.84724 0.92752 0.99209 1.43722 0.99496 1.83978 1.02447 1.19267 0.94355 1.37441 0.85960 0.91046 1.24869 0.98320 0.99234 0.96928 1.69527 1.12786 1.48144 1.24470 0.86092 0.79745 0.77036 0.83031 1.20605 1.21956 1.21984 1.20561 0.97367 0.91714 0.86108 1.21713 0.74581 0.93843 0.76661 1.90488 1.52112 1.40237 1.57282 1.48346 1.60047 1.04406 1.23620 1.21400 0.93985 0.89874 0.95039 1.21899 0.97435 0.96765 1.01166 1.21462 1.00166 0.95388 0.98152 1.21942 0.97511 0.97511 0.99884 1.20869 0.93353 0.84258 0.96074 0.93687 1.22017 1.03852 0.90601 0.98101 1.22031 1.00365 0.99138 1.00061 0.93406 0.93213 0.93776 0.92305 0.93136 0.95064 0.93375 0.93784 0.95831 0.88182 0.93415 0.90120 0.92090 0.90998 0.92677 0.92738 0.92105 0.91364 0.89954 0.89684 0.93990 0.93625 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.75 16 2 C -0.14 -2.54 6.26 -26.73 -0.17 -2.71 16 3 C 0.15 3.25 5.67 -4.04 -0.02 3.23 16 4 N -0.58 -14.32 2.02 -174.61 -0.35 -14.67 16 5 C -0.24 -6.54 9.69 -15.06 -0.15 -6.69 16 6 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 7 C 0.00 0.09 5.24 -17.43 -0.09 0.00 16 8 N -0.90 -24.72 8.09 55.49 0.45 -24.28 16 9 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 C 0.17 4.00 3.80 -5.20 -0.02 3.98 16 14 C 0.54 12.69 5.34 -10.99 -0.06 12.64 16 15 O -0.53 -14.13 11.41 5.56 0.06 -14.07 16 16 N -0.63 -12.18 2.98 -165.47 -0.49 -12.67 16 17 C 0.12 1.92 6.35 -3.71 -0.02 1.89 16 18 C -0.13 -1.91 6.08 -26.61 -0.16 -2.08 16 19 C -0.11 -1.53 5.88 -26.69 -0.16 -1.69 16 20 C -0.13 -2.04 4.75 -26.83 -0.13 -2.17 16 21 C 0.16 2.84 3.03 -67.82 -0.21 2.63 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 23 C -0.11 -2.15 3.90 -26.73 -0.10 -2.26 16 24 C -0.16 -2.52 9.33 37.16 0.35 -2.17 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.03 0.67 8.11 -51.93 -0.42 0.24 16 31 H 0.05 1.06 8.00 -51.92 -0.42 0.64 16 32 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.02 0.49 7.68 -51.92 -0.40 0.09 16 34 H 0.10 2.49 6.31 -51.93 -0.33 2.17 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.29 5.93 -51.93 -0.31 0.98 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.85 6.84 -51.93 -0.36 0.49 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.08 2.00 7.15 -51.93 -0.37 1.63 16 44 H 0.08 1.91 6.34 -51.93 -0.33 1.58 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.04 0.68 6.83 -51.93 -0.35 0.32 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -29.55 353.94 -9.34 -38.89 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.75 Total: 1.50 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -0.57 Total: 2.86 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.40 Total: -51.62 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.06 Total: -14.07 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.55 -9.34 -38.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350631568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.234 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds