Wall clock time and date at job start Tue Mar 31 2020 06:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47171 * 2 1 4 4 N 1.46496 * 109.47248 * 180.02562 * 3 2 1 5 5 C 1.36934 * 119.99866 * 269.99486 * 4 3 2 6 6 H 1.07996 * 120.00288 * 338.00876 * 5 4 3 7 7 C 1.38816 * 119.99795 * 158.00322 * 5 4 3 8 8 N 1.31616 * 120.00340 * 6.28887 * 7 5 4 9 9 Si 1.86803 * 119.99980 * 186.28242 * 7 5 4 10 10 H 1.48507 * 109.46733 * 60.00310 * 9 7 5 11 11 H 1.48500 * 109.47203 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47339 * 300.00492 * 9 7 5 13 13 C 1.46507 * 120.00221 * 89.99899 * 4 3 2 14 14 C 1.50690 * 109.46974 * 270.46517 * 13 4 3 15 15 O 1.21288 * 120.00095 * 359.97438 * 14 13 4 16 16 N 1.34782 * 119.99927 * 179.97438 * 14 13 4 17 17 C 1.46927 * 120.63129 * 5.27272 * 16 14 13 18 18 C 1.53191 * 108.77116 * 233.63201 * 17 16 14 19 19 C 1.53037 * 109.31324 * 305.35818 * 18 17 16 20 20 C 1.53351 * 109.60490 * 61.37844 * 19 18 17 21 21 C 1.46924 * 120.63013 * 185.28822 * 16 14 13 22 22 H 1.08994 * 109.59349 * 246.15763 * 21 16 14 23 23 C 1.52998 * 109.58829 * 6.44642 * 21 16 14 24 24 C 1.53004 * 109.47171 * 178.20761 * 23 21 16 25 25 H 1.09000 * 109.47029 * 60.00083 * 1 2 3 26 26 H 1.08997 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47174 * 300.00016 * 1 2 3 28 28 H 1.09002 * 109.47174 * 239.99984 * 2 1 3 29 29 H 1.08996 * 109.47722 * 119.99806 * 2 1 3 30 30 H 1.08992 * 109.47357 * 59.99499 * 3 2 1 31 31 H 1.09000 * 109.47076 * 299.99888 * 3 2 1 32 32 H 0.96992 * 120.00129 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46824 * 150.46101 * 13 4 3 34 34 H 1.08999 * 109.46708 * 30.46639 * 13 4 3 35 35 H 1.09007 * 109.58141 * 353.41591 * 17 16 14 36 36 H 1.08993 * 109.58752 * 113.83762 * 17 16 14 37 37 H 1.08996 * 109.49897 * 65.31973 * 18 17 16 38 38 H 1.09007 * 109.49362 * 185.37834 * 18 17 16 39 39 H 1.08996 * 109.46249 * 181.39060 * 19 18 17 40 40 H 1.08998 * 109.46153 * 301.36543 * 19 18 17 41 41 H 1.08997 * 109.68391 * 178.74677 * 20 19 18 42 42 H 1.09001 * 109.47191 * 58.55033 * 20 19 18 43 43 H 1.09004 * 109.47229 * 298.20823 * 23 21 16 44 44 H 1.08997 * 109.47533 * 58.20250 * 23 21 16 45 45 H 1.08999 * 109.46827 * 304.73324 * 24 23 21 46 46 H 1.08992 * 109.47253 * 64.73744 * 24 23 21 47 47 H 1.09000 * 109.46635 * 184.73500 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.4425 1.1850 6 1 3.7095 1.7927 2.0865 7 6 5.5025 0.9922 1.2282 8 7 6.1290 0.6824 0.1129 9 14 6.3795 0.8261 2.8691 10 1 5.6423 -0.1340 3.7294 11 1 7.7610 0.3302 2.6441 12 1 6.4324 2.1506 3.5384 13 6 4.2370 1.4427 -1.2697 14 6 4.4780 0.0221 -1.7107 15 8 4.0781 -0.8998 -1.0316 16 7 5.1380 -0.2240 -2.8598 17 6 5.7286 0.8760 -3.6343 18 6 5.2143 0.7961 -5.0751 19 6 5.5045 -0.5964 -5.6396 20 6 4.7700 -1.6530 -4.8055 21 6 5.2801 -1.5974 -3.3620 22 1 6.3297 -1.8901 -3.3339 23 6 4.4587 -2.5498 -2.4908 24 6 4.5727 -3.9723 -3.0425 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 7.0461 0.3682 0.1431 33 1 5.1930 1.9494 -1.1375 34 1 3.6512 1.9639 -2.0269 35 1 5.4372 1.8300 -3.1947 36 1 6.8147 0.7852 -3.6283 37 1 4.1397 0.9776 -5.0885 38 1 5.7177 1.5478 -5.6832 39 1 5.1617 -0.6480 -6.6730 40 1 6.5770 -0.7869 -5.6028 41 1 4.9578 -2.6435 -5.2198 42 1 3.6994 -1.4486 -4.8212 43 1 4.8371 -2.5250 -1.4688 44 1 3.4138 -2.2396 -2.4988 45 1 4.2734 -3.9806 -4.0905 46 1 5.6042 -4.3137 -2.9565 47 1 3.9217 -4.6359 -2.4734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350631569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:14 Heat of formation + Delta-G solvation = -10.381376 kcal Electronic energy + Delta-G solvation = -24906.375103 eV Core-core repulsion = 21704.090817 eV Total energy + Delta-G solvation = -3202.284285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.48427 -36.82893 -35.25570 -33.68915 -32.74379 -31.94323 -30.43130 -28.94821 -27.15242 -25.42315 -24.31818 -23.61139 -22.06094 -20.61446 -20.45710 -19.80067 -18.16947 -16.66919 -15.65872 -15.20183 -15.07162 -14.36042 -14.13061 -14.07798 -13.96441 -13.55209 -13.20343 -13.08348 -12.89584 -12.64236 -12.31159 -12.17319 -11.91923 -11.44058 -11.41373 -11.24864 -11.05568 -10.90417 -10.75634 -10.68695 -10.61263 -10.49664 -10.28747 -10.25935 -10.02777 -10.01124 -9.93461 -9.74934 -9.49925 -8.57777 -7.66485 -7.46691 -6.67367 -5.73104 -3.12230 3.42658 3.48446 3.50673 4.03466 4.34340 4.59617 5.04909 5.12863 5.16924 5.42467 5.45112 5.56044 5.60990 5.72478 5.72831 5.86707 5.87181 5.90931 5.94407 6.02788 6.05759 6.14367 6.21354 6.22085 6.27817 6.31584 6.34502 6.35375 6.46167 6.55465 6.58680 6.59718 6.66698 6.72364 6.91993 6.96664 7.19185 7.23636 7.38918 7.51891 7.72625 7.79921 8.42109 8.73306 9.26623 9.82291 9.98299 10.36303 11.33435 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.007142 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.680659 B = 3919.706416 C = 4488.514558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.152 3.848 4 N -0.579 5.579 5 C -0.239 4.239 6 H 0.071 0.929 7 C 0.007 3.993 8 N -0.909 5.909 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.287 1.287 13 C 0.165 3.835 14 C 0.539 3.461 15 O -0.527 6.527 16 N -0.625 5.625 17 C 0.123 3.877 18 C -0.136 4.136 19 C -0.116 4.116 20 C -0.131 4.131 21 C 0.154 3.846 22 H 0.050 0.950 23 C -0.108 4.108 24 C -0.160 4.160 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.031 0.969 32 H 0.253 0.747 33 H 0.116 0.884 34 H 0.021 0.979 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.044 0.956 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -1.076 -11.105 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.025 3.975 4 N -0.298 5.298 5 C -0.368 4.368 6 H 0.089 0.911 7 C -0.189 4.189 8 N -0.556 5.556 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.213 1.213 13 C 0.036 3.964 14 C 0.328 3.672 15 O -0.402 6.402 16 N -0.362 5.362 17 C -0.001 4.001 18 C -0.174 4.174 19 C -0.154 4.154 20 C -0.169 4.169 21 C 0.050 3.950 22 H 0.068 0.932 23 C -0.146 4.146 24 C -0.218 4.218 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.133 0.867 34 H 0.039 0.961 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.603 -1.572 -10.657 11.082 hybrid contribution 0.772 -0.436 0.711 1.136 sum -1.831 -2.008 -9.946 10.310 Atomic orbital electron populations 1.21792 0.98399 1.00107 1.00323 1.22162 0.92207 1.00436 1.03067 1.20905 0.84524 0.93950 0.98110 1.43786 0.99555 1.84512 1.01996 1.19179 0.95106 1.35165 0.87374 0.91075 1.24891 0.97909 0.99215 0.96893 1.69639 1.11653 1.49781 1.24486 0.86274 0.78414 0.77699 0.83709 1.21286 1.21864 1.21329 1.20780 0.98265 0.91627 0.85775 1.21912 0.74353 0.93915 0.77008 1.90484 1.52059 1.45410 1.52226 1.48290 1.58346 1.04964 1.24637 1.21392 0.97192 0.91340 0.90186 1.21961 1.01557 0.96848 0.97081 1.21528 1.00270 0.95211 0.98367 1.22107 1.00301 0.98392 0.96115 1.20971 0.98266 0.83695 0.92055 0.93168 1.22033 1.00589 0.91174 1.00780 1.22048 1.00694 0.98806 1.00219 0.93907 0.94067 0.93703 0.91738 0.92272 0.93942 0.95044 0.93630 0.86666 0.96128 0.89900 0.92848 0.91906 0.91664 0.92656 0.92276 0.91668 0.92060 0.88318 0.91877 0.93557 0.93669 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.14 -2.90 5.51 -26.73 -0.15 -3.04 16 3 C 0.15 3.25 5.71 -4.04 -0.02 3.22 16 4 N -0.58 -14.38 2.09 -174.61 -0.36 -14.74 16 5 C -0.24 -6.50 9.70 -15.06 -0.15 -6.65 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C 0.01 0.20 5.40 -17.43 -0.09 0.11 16 8 N -0.91 -24.97 8.22 55.49 0.46 -24.52 16 9 Si 0.91 22.28 29.56 -169.99 -5.02 17.26 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.17 3.83 3.82 -5.19 -0.02 3.81 16 14 C 0.54 12.37 5.41 -10.99 -0.06 12.31 16 15 O -0.53 -13.55 9.28 5.55 0.05 -13.50 16 16 N -0.62 -12.02 2.97 -165.22 -0.49 -12.51 16 17 C 0.12 1.97 6.35 -3.71 -0.02 1.94 16 18 C -0.14 -1.73 6.08 -26.61 -0.16 -1.89 16 19 C -0.12 -1.42 5.89 -26.53 -0.16 -1.57 16 20 C -0.13 -1.82 4.85 -26.45 -0.13 -1.95 16 21 C 0.15 2.69 3.02 -67.60 -0.20 2.49 16 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 23 C -0.11 -2.04 3.90 -26.73 -0.10 -2.14 16 24 C -0.16 -2.40 9.67 37.16 0.36 -2.04 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.47 6.33 -51.93 -0.33 1.14 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.04 0.88 8.03 -51.93 -0.42 0.47 16 31 H 0.03 0.61 7.90 -51.93 -0.41 0.20 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.12 2.89 5.83 -51.93 -0.30 2.58 16 34 H 0.02 0.43 7.66 -51.93 -0.40 0.04 16 35 H 0.08 1.34 5.93 -51.92 -0.31 1.04 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.82 6.63 -51.93 -0.34 0.47 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.10 2.28 6.25 -51.93 -0.32 1.96 16 44 H 0.06 1.29 7.22 -51.93 -0.38 0.92 16 45 H 0.05 0.61 6.29 -51.93 -0.33 0.29 16 46 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 348.71 15.07 5.25 5.25 Total: -1.00 -29.17 348.71 -9.23 -38.40 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.58 Total: 1.84 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.54 Total: 2.51 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.40 Total: -51.77 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.05 Total: -13.50 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.17 -9.23 -38.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350631569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.019 kcal (2) G-P(sol) polarization free energy of solvation -29.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds