Wall clock time and date at job start Tue Mar 31 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47149 * 2 1 4 4 N 1.46496 * 109.46889 * 180.02562 * 3 2 1 5 5 C 1.34781 * 119.99750 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99958 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99872 * 179.97438 * 5 4 3 8 8 C 1.53120 * 109.52196 * 299.67716 * 7 5 4 9 9 C 1.53042 * 109.27547 * 182.44047 * 8 7 5 10 10 N 1.46841 * 109.52162 * 59.18557 * 9 8 7 11 11 C 1.46896 * 110.99936 * 174.15806 * 10 9 8 12 12 H 1.09000 * 109.47494 * 173.59340 * 11 10 9 13 13 C 1.53005 * 109.47155 * 53.59702 * 11 10 9 14 14 C 1.52996 * 109.47223 * 293.59653 * 11 10 9 15 15 C 1.50700 * 109.47139 * 295.99842 * 14 11 10 16 16 H 1.08000 * 120.00154 * 359.97438 * 15 14 11 17 17 C 1.37880 * 119.99918 * 180.02562 * 15 14 11 18 18 N 1.31507 * 120.00161 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99757 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47278 * 89.99900 * 19 17 15 21 21 H 1.48498 * 109.46739 * 209.99967 * 19 17 15 22 22 H 1.48502 * 109.46864 * 329.99580 * 19 17 15 23 23 C 1.46852 * 111.19699 * 298.25221 * 10 9 8 24 24 C 1.53037 * 109.52145 * 61.74645 * 23 10 9 25 25 H 1.08996 * 109.47187 * 299.99600 * 1 2 3 26 26 H 1.08995 * 109.46989 * 60.00086 * 1 2 3 27 27 H 1.09008 * 109.47011 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47205 * 239.99863 * 2 1 3 29 29 H 1.08999 * 109.47113 * 120.00648 * 2 1 3 30 30 H 1.08996 * 109.46749 * 60.00132 * 3 2 1 31 31 H 1.08995 * 109.47105 * 299.99843 * 3 2 1 32 32 H 0.97006 * 120.00517 * 359.97438 * 4 3 2 33 33 H 1.09003 * 109.57634 * 59.83924 * 7 5 4 34 34 H 1.08993 * 109.50435 * 302.38202 * 8 7 5 35 35 H 1.09002 * 109.50323 * 62.50510 * 8 7 5 36 36 H 1.08996 * 109.46681 * 299.16389 * 9 8 7 37 37 H 1.09004 * 109.45508 * 179.19855 * 9 8 7 38 38 H 1.09001 * 109.47112 * 299.99973 * 13 11 10 39 39 H 1.08996 * 109.47398 * 60.00119 * 13 11 10 40 40 H 1.09005 * 109.46905 * 180.02562 * 13 11 10 41 41 H 1.09004 * 109.47524 * 55.99667 * 14 11 10 42 42 H 1.09009 * 109.47436 * 175.99674 * 14 11 10 43 43 H 0.97003 * 120.00441 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.46091 * 301.73144 * 23 10 9 45 45 H 1.08999 * 109.45307 * 181.75362 * 23 10 9 46 46 H 1.08998 * 109.49969 * 180.87950 * 24 23 10 47 47 H 1.08997 * 109.50449 * 60.75911 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5725 3.6600 0.0002 7 6 5.6859 2.6096 -0.0003 8 6 6.1976 1.8946 1.2533 9 6 7.7268 1.9511 1.2784 10 7 8.1662 3.3522 1.2787 11 6 9.6229 3.4470 1.4420 12 1 9.9349 4.4849 1.3251 13 6 10.3121 2.5850 0.3822 14 6 10.0133 2.9510 2.8356 15 6 9.4140 3.8593 3.8782 16 1 8.8150 4.7059 3.5769 17 6 9.6314 3.6100 5.2168 18 7 10.3611 2.5793 5.5837 19 14 8.8891 4.7363 6.5091 20 1 7.5440 4.2349 6.8890 21 1 9.7655 4.7595 7.7077 22 1 8.7680 6.1099 5.9578 23 6 7.7267 4.0467 0.0617 24 6 6.1976 4.0528 0.0002 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9901 0.6024 -0.0006 33 1 6.0511 2.0939 -0.8884 34 1 5.8007 2.3873 2.1408 35 1 5.8721 0.8544 1.2374 36 1 8.1234 1.4462 0.3976 37 1 8.0937 1.4552 2.1771 38 1 10.0003 1.5472 0.4990 39 1 10.0341 2.9384 -0.6107 40 1 11.3931 2.6551 0.5037 41 1 9.6390 1.9372 2.9786 42 1 11.0991 2.9543 2.9317 43 1 10.5137 2.4037 6.5254 44 1 8.1233 3.5319 -0.8135 45 1 8.0937 5.0729 0.0768 46 1 5.8721 4.5546 -0.9110 47 1 5.8006 4.5794 0.8681 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351187021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:41 Heat of formation + Delta-G solvation = -60.960643 kcal Electronic energy + Delta-G solvation = -23063.245319 eV Core-core repulsion = 19858.767752 eV Total energy + Delta-G solvation = -3204.477567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.16080 -38.45582 -35.99134 -34.68790 -32.86828 -32.34935 -30.54682 -29.75342 -27.29748 -26.69427 -24.43256 -23.04846 -22.73213 -21.92602 -20.77362 -19.59634 -18.66443 -17.07930 -16.21991 -16.13901 -15.94573 -15.35920 -14.77208 -14.53739 -14.33677 -14.09231 -13.61202 -13.43930 -13.31993 -13.09405 -12.69684 -12.45202 -12.35711 -12.11737 -11.80000 -11.68750 -11.52370 -11.45737 -11.31668 -11.21233 -10.87997 -10.84819 -10.56891 -10.39194 -10.29121 -10.22094 -9.83004 -9.57456 -9.16754 -9.12399 -8.93561 -8.23153 -7.42964 -5.86521 -3.83791 2.69228 3.12551 3.42106 3.47835 3.52914 4.49636 4.54165 4.59867 4.63642 4.72248 4.88301 4.97443 5.04544 5.28919 5.30739 5.36976 5.48791 5.50808 5.53852 5.66950 5.67944 5.74731 5.79054 5.80978 5.85672 5.87230 5.93564 6.02858 6.05622 6.10728 6.31377 6.33402 6.41375 6.46208 6.56894 6.67328 6.73909 7.01026 7.42653 7.56581 7.70975 7.94968 8.05323 8.15380 8.23486 8.61291 9.22591 9.78037 11.25463 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.003971 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.305688 B = 7049.703318 C = 7855.859522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.736 5.736 5 C 0.520 3.480 6 O -0.540 6.540 7 C -0.105 4.105 8 C -0.105 4.105 9 C 0.059 3.941 10 N -0.510 5.510 11 C 0.087 3.913 12 H 0.069 0.931 13 C -0.184 4.184 14 C 0.030 3.970 15 C -0.488 4.488 16 H 0.061 0.939 17 C 0.050 3.950 18 N -0.905 5.905 19 Si 0.889 3.111 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.275 1.275 23 C 0.054 3.946 24 C -0.093 4.093 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.400 0.600 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.025 0.975 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.257 0.743 44 H 0.024 0.976 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.154 -6.583 -14.237 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.388 5.388 5 C 0.307 3.693 6 O -0.416 6.416 7 C -0.127 4.127 8 C -0.143 4.143 9 C -0.069 4.069 10 N -0.234 5.234 11 C -0.021 4.021 12 H 0.088 0.912 13 C -0.243 4.243 14 C -0.007 4.007 15 C -0.526 4.526 16 H 0.079 0.921 17 C -0.149 4.149 18 N -0.546 5.546 19 Si 0.717 3.283 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.200 1.200 23 C -0.075 4.075 24 C -0.131 4.131 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.066 0.934 44 H 0.042 0.958 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.763 -5.646 -13.678 20.209 hybrid contribution 0.191 -0.355 0.098 0.414 sum -13.573 -6.001 -13.580 20.115 Atomic orbital electron populations 1.21679 0.94642 1.02090 1.02325 1.21742 0.96932 0.95976 1.02774 1.21368 0.80017 0.96950 1.02303 1.46071 1.07112 1.09013 1.76647 1.20861 0.90359 0.83239 0.74824 1.90681 1.70565 1.31399 1.48990 1.21429 0.90407 1.00149 1.00692 1.21595 0.96968 0.98926 0.96796 1.22050 0.93244 0.90429 1.01227 1.62024 1.13658 1.12966 1.34741 1.21915 0.84435 0.98663 0.97105 0.91248 1.22524 1.01495 1.01097 0.99137 1.19199 0.96141 0.96674 0.88675 1.21184 1.29833 1.11364 0.90262 0.92091 1.24996 0.95695 0.95504 0.98698 1.69960 1.40094 1.28561 1.16023 0.86644 0.78911 0.81427 0.81279 1.20950 1.21672 1.19992 1.22098 0.94480 0.99352 0.91549 1.21388 0.95013 0.93740 1.02994 0.92292 0.92437 0.92224 0.91388 0.91159 0.91563 0.91756 0.76560 0.89283 0.90262 0.91957 0.95689 0.89057 0.92884 0.94192 0.92589 0.96346 0.96395 0.93382 0.95820 0.90906 0.91720 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.14 -0.90 6.05 -26.73 -0.16 -1.06 16 3 C 0.12 1.10 5.67 -4.04 -0.02 1.08 16 4 N -0.74 -7.57 5.46 -60.30 -0.33 -7.90 16 5 C 0.52 7.14 7.16 -10.98 -0.08 7.06 16 6 O -0.54 -9.47 15.98 5.56 0.09 -9.39 16 7 C -0.11 -1.37 2.59 -91.65 -0.24 -1.61 16 8 C -0.10 -1.47 5.26 -26.65 -0.14 -1.61 16 9 C 0.06 0.97 4.53 -3.83 -0.02 0.95 16 10 N -0.51 -9.45 4.29 -226.69 -0.97 -10.43 16 11 C 0.09 1.73 2.26 -67.71 -0.15 1.58 16 12 H 0.07 1.43 7.98 -51.93 -0.41 1.01 16 13 C -0.18 -3.07 8.44 37.16 0.31 -2.75 16 14 C 0.03 0.75 4.37 -27.88 -0.12 0.63 16 15 C -0.49 -13.63 8.81 -34.44 -0.30 -13.93 16 16 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 17 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 18 N -0.91 -27.20 13.29 55.43 0.74 -26.46 16 19 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.05 0.83 5.14 -3.83 -0.02 0.81 16 24 C -0.09 -1.38 4.68 -26.65 -0.12 -1.51 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 3.11 7.96 -40.82 -0.32 2.78 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 36 H 0.03 0.38 6.57 -51.93 -0.34 0.03 16 37 H 0.09 1.76 6.17 -51.93 -0.32 1.44 16 38 H 0.05 0.87 6.46 -51.93 -0.34 0.53 16 39 H 0.04 0.59 6.84 -51.93 -0.36 0.23 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.48 6.28 -51.93 -0.33 0.16 16 42 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.02 0.34 6.89 -51.93 -0.36 -0.02 16 45 H 0.07 1.14 8.01 -51.93 -0.42 0.72 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -32.22 362.82 -9.45 -41.67 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.62 Total: -0.70 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -0.80 Total: -9.53 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.57 Total: -44.78 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.22 -9.45 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351187021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.291 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds