Wall clock time and date at job start Tue Mar 31 2020 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47149 * 2 1 4 4 N 1.46496 * 109.46889 * 180.02562 * 3 2 1 5 5 C 1.34781 * 119.99750 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99958 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99872 * 179.97438 * 5 4 3 8 8 C 1.53120 * 109.52196 * 299.67716 * 7 5 4 9 9 C 1.53042 * 109.27547 * 182.44047 * 8 7 5 10 10 N 1.46841 * 109.52162 * 59.18557 * 9 8 7 11 11 C 1.46896 * 110.99936 * 174.15806 * 10 9 8 12 12 H 1.09000 * 109.47494 * 173.59340 * 11 10 9 13 13 C 1.53005 * 109.47155 * 53.59702 * 11 10 9 14 14 C 1.52996 * 109.47223 * 293.59653 * 11 10 9 15 15 C 1.50700 * 109.47139 * 295.99842 * 14 11 10 16 16 H 1.08000 * 120.00154 * 359.97438 * 15 14 11 17 17 C 1.37880 * 119.99918 * 180.02562 * 15 14 11 18 18 N 1.31507 * 120.00161 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99757 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47278 * 89.99900 * 19 17 15 21 21 H 1.48498 * 109.46739 * 209.99967 * 19 17 15 22 22 H 1.48502 * 109.46864 * 329.99580 * 19 17 15 23 23 C 1.46852 * 111.19699 * 298.25221 * 10 9 8 24 24 C 1.53037 * 109.52145 * 61.74645 * 23 10 9 25 25 H 1.08996 * 109.47187 * 299.99600 * 1 2 3 26 26 H 1.08995 * 109.46989 * 60.00086 * 1 2 3 27 27 H 1.09008 * 109.47011 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47205 * 239.99863 * 2 1 3 29 29 H 1.08999 * 109.47113 * 120.00648 * 2 1 3 30 30 H 1.08996 * 109.46749 * 60.00132 * 3 2 1 31 31 H 1.08995 * 109.47105 * 299.99843 * 3 2 1 32 32 H 0.97006 * 120.00517 * 359.97438 * 4 3 2 33 33 H 1.09003 * 109.57634 * 59.83924 * 7 5 4 34 34 H 1.08993 * 109.50435 * 302.38202 * 8 7 5 35 35 H 1.09002 * 109.50323 * 62.50510 * 8 7 5 36 36 H 1.08996 * 109.46681 * 299.16389 * 9 8 7 37 37 H 1.09004 * 109.45508 * 179.19855 * 9 8 7 38 38 H 1.09001 * 109.47112 * 299.99973 * 13 11 10 39 39 H 1.08996 * 109.47398 * 60.00119 * 13 11 10 40 40 H 1.09005 * 109.46905 * 180.02562 * 13 11 10 41 41 H 1.09004 * 109.47524 * 55.99667 * 14 11 10 42 42 H 1.09009 * 109.47436 * 175.99674 * 14 11 10 43 43 H 0.97003 * 120.00441 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.46091 * 301.73144 * 23 10 9 45 45 H 1.08999 * 109.45307 * 181.75362 * 23 10 9 46 46 H 1.08998 * 109.49969 * 180.87950 * 24 23 10 47 47 H 1.08997 * 109.50449 * 60.75911 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5725 3.6600 0.0002 7 6 5.6859 2.6096 -0.0003 8 6 6.1976 1.8946 1.2533 9 6 7.7268 1.9511 1.2784 10 7 8.1662 3.3522 1.2787 11 6 9.6229 3.4470 1.4420 12 1 9.9349 4.4849 1.3251 13 6 10.3121 2.5850 0.3822 14 6 10.0133 2.9510 2.8356 15 6 9.4140 3.8593 3.8782 16 1 8.8150 4.7059 3.5769 17 6 9.6314 3.6100 5.2168 18 7 10.3611 2.5793 5.5837 19 14 8.8891 4.7363 6.5091 20 1 7.5440 4.2349 6.8890 21 1 9.7655 4.7595 7.7077 22 1 8.7680 6.1099 5.9578 23 6 7.7267 4.0467 0.0617 24 6 6.1976 4.0528 0.0002 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9901 0.6024 -0.0006 33 1 6.0511 2.0939 -0.8884 34 1 5.8007 2.3873 2.1408 35 1 5.8721 0.8544 1.2374 36 1 8.1234 1.4462 0.3976 37 1 8.0937 1.4552 2.1771 38 1 10.0003 1.5472 0.4990 39 1 10.0341 2.9384 -0.6107 40 1 11.3931 2.6551 0.5037 41 1 9.6390 1.9372 2.9786 42 1 11.0991 2.9543 2.9317 43 1 10.5137 2.4037 6.5254 44 1 8.1233 3.5319 -0.8135 45 1 8.0937 5.0729 0.0768 46 1 5.8721 4.5546 -0.9110 47 1 5.8006 4.5794 0.8681 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351187021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:40 Heat of formation + Delta-G solvation = -82.387766 kcal Electronic energy + Delta-G solvation = -23064.174469 eV Core-core repulsion = 19858.767752 eV Total energy + Delta-G solvation = -3205.406717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28682 -39.76290 -36.84599 -36.16143 -34.51606 -33.52109 -31.79645 -31.21017 -29.12553 -27.55659 -25.68368 -24.82714 -24.04705 -22.57687 -22.01068 -20.83679 -20.05419 -18.32937 -18.11991 -17.22884 -16.75307 -16.68489 -16.49443 -15.76922 -15.62712 -15.31007 -14.86122 -14.75731 -14.45816 -14.17471 -13.84599 -13.70127 -13.56872 -13.35319 -13.19481 -13.01508 -12.83200 -12.78714 -12.60252 -12.45443 -12.28623 -12.07213 -12.01235 -11.75283 -11.74099 -11.52923 -11.37517 -11.06211 -10.96076 -10.64785 -10.45258 -10.09351 -8.81261 -8.08979 -6.12389 1.40773 1.41638 1.52384 1.62161 2.22769 2.47630 3.14414 3.28963 3.65841 3.82418 3.89769 3.95705 4.07882 4.21139 4.30317 4.36155 4.41094 4.45542 4.47012 4.57255 4.66134 4.66709 4.74681 4.75941 4.82710 4.86271 4.92472 5.00847 5.09239 5.14952 5.20731 5.23511 5.24540 5.27575 5.29244 5.34243 5.45223 5.52498 5.54709 5.74917 5.92870 6.37104 6.54525 6.55561 6.60144 7.01562 7.25656 7.53034 9.02818 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.003971 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.305688 B = 7049.703318 C = 7855.859522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.115 3.885 4 N -0.719 5.719 5 C 0.518 3.482 6 O -0.585 6.585 7 C -0.096 4.096 8 C -0.096 4.096 9 C 0.061 3.939 10 N -0.538 5.538 11 C 0.095 3.905 12 H 0.059 0.941 13 C -0.172 4.172 14 C 0.036 3.964 15 C -0.496 4.496 16 H 0.053 0.947 17 C -0.002 4.002 18 N -0.938 5.938 19 Si 0.950 3.050 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.059 3.941 24 C -0.089 4.089 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.416 0.584 33 H 0.123 0.877 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.001 0.999 42 H -0.009 1.009 43 H 0.258 0.742 44 H 0.049 0.951 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 -7.649 -15.993 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.008 4.008 4 N -0.372 5.372 5 C 0.306 3.694 6 O -0.465 6.465 7 C -0.117 4.117 8 C -0.134 4.134 9 C -0.066 4.066 10 N -0.263 5.263 11 C -0.013 4.013 12 H 0.078 0.922 13 C -0.231 4.231 14 C -0.001 4.001 15 C -0.535 4.535 16 H 0.071 0.929 17 C -0.198 4.198 18 N -0.581 5.581 19 Si 0.777 3.223 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.068 4.068 24 C -0.127 4.127 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.253 0.747 33 H 0.141 0.859 34 H 0.065 0.935 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.019 0.981 42 H 0.010 0.990 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.712 -6.751 -15.445 22.373 hybrid contribution 0.463 -0.036 0.645 0.795 sum -14.250 -6.787 -14.800 21.637 Atomic orbital electron populations 1.21696 0.94201 1.02809 1.02134 1.21694 0.97216 0.93847 1.03715 1.21451 0.79332 0.98845 1.01206 1.45977 1.07638 1.08759 1.74818 1.20970 0.90634 0.83426 0.74402 1.90668 1.71340 1.33148 1.51361 1.21358 0.89991 0.99011 1.01356 1.21515 0.95100 1.00807 0.96022 1.21995 0.94753 0.89263 1.00630 1.61879 1.12593 1.14615 1.37198 1.21589 0.86153 0.98454 0.95140 0.92244 1.22377 1.01026 1.00574 0.99155 1.19058 0.94073 0.95409 0.91537 1.21485 1.29339 1.11369 0.91293 0.92887 1.25766 0.96253 0.96934 1.00867 1.70070 1.41414 1.30119 1.16457 0.85673 0.78136 0.79703 0.78835 1.20598 1.21024 1.19442 1.22081 0.94778 0.98999 0.90988 1.21305 0.94433 0.94971 1.02025 0.92880 0.92342 0.91014 0.89918 0.90652 0.93312 0.92333 0.74732 0.85891 0.93545 0.88492 0.93081 0.92543 0.92484 0.91411 0.92686 0.98084 0.99037 0.93300 0.93306 0.91441 0.90549 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 71.98 0.71 -0.79 16 2 C -0.13 -1.36 6.05 30.60 0.19 -1.18 16 3 C 0.12 2.01 5.67 86.38 0.49 2.50 16 4 N -0.72 -13.21 5.46 -463.07 -2.53 -15.74 16 5 C 0.52 13.45 7.16 87.66 0.63 14.08 16 6 O -0.59 -20.43 15.98 -3.03 -0.05 -20.48 16 7 C -0.10 -2.27 2.59 -11.46 -0.03 -2.30 16 8 C -0.10 -2.54 5.26 30.65 0.16 -2.38 16 9 C 0.06 1.95 4.53 86.33 0.39 2.34 16 10 N -0.54 -19.65 4.29 -871.11 -3.74 -23.39 16 11 C 0.09 3.78 2.26 44.92 0.10 3.88 16 12 H 0.06 2.45 7.98 -2.39 -0.02 2.43 16 13 C -0.17 -5.42 8.44 71.98 0.61 -4.81 16 14 C 0.04 1.87 4.37 29.85 0.13 2.00 16 15 C -0.50 -28.43 8.81 25.60 0.23 -28.21 16 16 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 17 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 18 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 19 Si 0.95 46.41 29.54 68.60 2.03 48.44 16 20 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 23 C 0.06 1.74 5.14 86.32 0.44 2.18 16 24 C -0.09 -2.54 4.68 30.65 0.14 -2.39 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.42 5.02 7.96 -92.70 -0.74 4.29 16 33 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 1.86 7.66 -2.39 -0.02 1.84 16 36 H 0.05 1.36 6.57 -2.39 -0.02 1.35 16 37 H 0.06 2.20 6.17 -2.38 -0.01 2.18 16 38 H 0.06 1.74 6.46 -2.39 -0.02 1.72 16 39 H 0.07 1.76 6.84 -2.39 -0.02 1.75 16 40 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.00 0.05 6.28 -2.38 -0.01 0.04 16 42 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 43 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.05 1.21 6.89 -2.39 -0.02 1.19 16 45 H 0.07 2.03 8.01 -2.39 -0.02 2.01 16 46 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.05 1.62 8.04 -2.39 -0.02 1.60 16 Total: -1.00 -72.03 362.82 0.84 -71.19 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.19 Total: 12.02 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 4.65 Total: -14.76 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -5.98 Total: -96.41 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.05 Total: -20.48 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -72.03 0.84 -71.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351187021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.195 kcal (2) G-P(sol) polarization free energy of solvation -72.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds