Wall clock time and date at job start Tue Mar 31 2020 06:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47241 * 2 1 4 4 N 1.46499 * 109.47012 * 179.97438 * 3 2 1 5 5 C 1.34775 * 119.99696 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00427 * 359.97438 * 5 4 3 7 7 C 1.50709 * 119.99984 * 180.02562 * 5 4 3 8 8 C 1.53114 * 109.52244 * 179.97438 * 7 5 4 9 9 C 1.53033 * 109.27866 * 177.55905 * 8 7 5 10 10 N 1.46853 * 109.52305 * 300.81725 * 9 8 7 11 11 C 1.46900 * 111.00293 * 185.83831 * 10 9 8 12 12 H 1.08991 * 109.47516 * 188.74592 * 11 10 9 13 13 C 1.53002 * 109.46957 * 308.74636 * 11 10 9 14 14 C 1.53003 * 109.46787 * 68.74436 * 11 10 9 15 15 C 1.50698 * 109.47323 * 63.57749 * 14 11 10 16 16 H 1.08003 * 119.99770 * 5.07925 * 15 14 11 17 17 C 1.37871 * 120.00232 * 185.08145 * 15 14 11 18 18 N 1.31519 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00042 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47304 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47100 * 120.00427 * 19 17 15 22 22 H 1.48506 * 109.47428 * 240.00173 * 19 17 15 23 23 C 1.46845 * 111.19674 * 61.74112 * 10 9 8 24 24 C 1.53038 * 109.52395 * 298.26014 * 23 10 9 25 25 H 1.08996 * 109.46976 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46748 * 300.00271 * 1 2 3 27 27 H 1.08998 * 109.47116 * 59.99833 * 1 2 3 28 28 H 1.08991 * 109.47431 * 239.99872 * 2 1 3 29 29 H 1.09001 * 109.46979 * 119.99415 * 2 1 3 30 30 H 1.08999 * 109.46815 * 59.99834 * 3 2 1 31 31 H 1.08994 * 109.46760 * 299.99946 * 3 2 1 32 32 H 0.96998 * 120.00508 * 0.02562 * 4 3 2 33 33 H 1.08997 * 109.57120 * 59.83909 * 7 5 4 34 34 H 1.08998 * 109.50716 * 57.61727 * 8 7 5 35 35 H 1.09009 * 109.50348 * 297.49394 * 8 7 5 36 36 H 1.08998 * 109.46866 * 60.83251 * 9 8 7 37 37 H 1.09005 * 109.46646 * 180.80021 * 9 8 7 38 38 H 1.08997 * 109.47143 * 179.97438 * 13 11 10 39 39 H 1.08998 * 109.47132 * 300.00087 * 13 11 10 40 40 H 1.09004 * 109.47126 * 59.99975 * 13 11 10 41 41 H 1.09000 * 109.46560 * 183.57500 * 14 11 10 42 42 H 1.08996 * 109.47229 * 303.56902 * 14 11 10 43 43 H 0.96998 * 119.99950 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.46235 * 58.27617 * 23 10 9 45 45 H 1.08994 * 109.46274 * 178.24303 * 23 10 9 46 46 H 1.08997 * 109.50575 * 179.11916 * 24 23 10 47 47 H 1.08997 * 109.50303 * 299.24189 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0012 6 8 3.5725 3.6600 0.0008 7 6 5.6860 2.6097 0.0013 8 6 6.1976 4.0528 0.0014 9 6 7.7267 4.0467 0.0630 10 7 8.1661 3.3526 1.2803 11 6 9.6229 3.4475 1.4437 12 1 9.9398 2.7996 2.2608 13 6 10.3109 3.0094 0.1492 14 6 10.0073 4.8940 1.7613 15 6 9.4008 5.2969 3.0807 16 1 8.8705 4.5684 3.6761 17 6 9.5229 6.5954 3.5277 18 7 10.1682 7.4826 2.8024 19 14 8.7705 7.0949 5.1629 20 1 8.1029 5.9207 5.7799 21 1 9.8384 7.5892 6.0687 22 1 7.7725 8.1718 4.9402 23 6 7.7267 1.9515 1.2804 24 6 6.1976 1.8950 1.2552 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9901 0.6025 0.0006 33 1 6.0511 2.0941 -0.8869 34 1 5.8006 4.5797 0.8691 35 1 5.8722 4.5544 -0.9100 36 1 8.1235 3.5318 -0.8119 37 1 8.0938 5.0730 0.0776 38 1 11.3918 3.0802 0.2703 39 1 10.0370 1.9789 -0.0771 40 1 9.9940 3.6574 -0.6680 41 1 11.0926 4.9769 1.8198 42 1 9.6347 5.5500 0.9746 43 1 10.2538 8.3962 3.1167 44 1 8.1234 1.4463 0.3998 45 1 8.0936 1.4559 2.1792 46 1 5.8720 0.8549 1.2395 47 1 5.8005 2.3879 2.1425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351187023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:44 Heat of formation + Delta-G solvation = -60.342087 kcal Electronic energy + Delta-G solvation = -23045.480011 eV Core-core repulsion = 19841.029267 eV Total energy + Delta-G solvation = -3204.450744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.15681 -38.44641 -35.99926 -34.70640 -32.84393 -32.34000 -30.52230 -29.79538 -27.26983 -26.68209 -24.47375 -23.07301 -22.66398 -21.92171 -20.78855 -19.64306 -18.63569 -17.10008 -16.21839 -16.07324 -15.98876 -15.36802 -14.73438 -14.53444 -14.33499 -14.03492 -13.65320 -13.54021 -13.28952 -13.07768 -12.65713 -12.47831 -12.37212 -12.12602 -11.88996 -11.69417 -11.52249 -11.45715 -11.24466 -11.13287 -10.98898 -10.79489 -10.49774 -10.38649 -10.28429 -10.19647 -9.85617 -9.56566 -9.17336 -9.11697 -8.90213 -8.20821 -7.41353 -5.83690 -3.80799 2.69829 3.11097 3.42699 3.50296 3.55463 4.47661 4.53179 4.60618 4.61990 4.71478 4.86933 4.94553 5.02814 5.26930 5.27905 5.35508 5.47866 5.52149 5.54136 5.64782 5.66231 5.76364 5.78108 5.80453 5.81460 5.85568 5.94025 6.01209 6.04895 6.18615 6.24128 6.32776 6.36311 6.47060 6.62924 6.72478 6.81263 7.03223 7.41859 7.57833 7.73009 7.96608 8.07441 8.17510 8.24307 8.63059 9.24535 9.80635 11.28463 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.003795 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.725090 B = 7377.056790 C = 8159.793550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.737 5.737 5 C 0.519 3.481 6 O -0.536 6.536 7 C -0.105 4.105 8 C -0.094 4.094 9 C 0.058 3.942 10 N -0.509 5.509 11 C 0.087 3.913 12 H 0.068 0.932 13 C -0.183 4.183 14 C 0.029 3.971 15 C -0.485 4.485 16 H 0.059 0.941 17 C 0.050 3.950 18 N -0.904 5.904 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.287 1.287 23 C 0.056 3.944 24 C -0.104 4.104 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.399 0.601 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.024 0.976 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.038 0.962 40 H 0.054 0.946 41 H 0.014 0.986 42 H 0.023 0.977 43 H 0.256 0.744 44 H 0.025 0.975 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.808 -17.465 -8.093 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.007 4.007 4 N -0.390 5.390 5 C 0.305 3.695 6 O -0.411 6.411 7 C -0.126 4.126 8 C -0.133 4.133 9 C -0.070 4.070 10 N -0.233 5.233 11 C -0.021 4.021 12 H 0.086 0.914 13 C -0.242 4.242 14 C -0.008 4.008 15 C -0.524 4.524 16 H 0.077 0.923 17 C -0.149 4.149 18 N -0.546 5.546 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.215 1.215 22 H -0.213 1.213 23 C -0.073 4.073 24 C -0.142 4.142 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.233 0.767 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.041 0.959 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.440 -16.275 -7.679 22.460 hybrid contribution 0.175 -0.484 0.159 0.538 sum -13.265 -16.758 -7.520 22.657 Atomic orbital electron populations 1.21680 0.94633 1.02070 1.02383 1.21735 0.96947 0.95995 1.02672 1.21370 0.80053 0.96893 1.02366 1.46075 1.07071 1.08949 1.76899 1.20883 0.90378 0.83239 0.74953 1.90702 1.70493 1.31352 1.48572 1.21429 0.90377 1.00521 1.00301 1.21423 0.95390 0.93174 1.03289 1.22100 0.93867 1.00743 0.90304 1.62025 1.13647 1.10890 1.36736 1.21905 0.84468 1.01419 0.94261 0.91424 1.22525 1.01456 0.99571 1.00682 1.19199 0.95873 0.88310 0.97399 1.21164 1.32689 0.94780 1.03752 0.92260 1.24990 0.95855 0.96904 0.97160 1.69971 1.43355 1.03326 1.37914 0.86592 0.78850 0.78468 0.84395 1.19829 1.21504 1.21303 1.22033 0.93897 0.91220 1.00134 1.21563 0.96583 0.98797 0.97225 0.92243 0.92292 0.92385 0.91401 0.91270 0.91580 0.91709 0.76701 0.89293 0.90033 0.91627 0.95843 0.89165 0.92614 0.94304 0.92739 0.96746 0.95905 0.93429 0.95729 0.90939 0.92065 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.14 -0.83 6.05 -26.73 -0.16 -0.99 16 3 C 0.12 1.07 5.67 -4.04 -0.02 1.05 16 4 N -0.74 -7.32 5.46 -60.29 -0.33 -7.65 16 5 C 0.52 7.14 7.15 -10.98 -0.08 7.06 16 6 O -0.54 -9.66 15.98 5.55 0.09 -9.57 16 7 C -0.10 -1.37 2.59 -91.65 -0.24 -1.61 16 8 C -0.09 -1.55 4.68 -26.66 -0.12 -1.67 16 9 C 0.06 1.02 4.47 -3.83 -0.02 1.00 16 10 N -0.51 -9.48 4.26 -226.69 -0.97 -10.45 16 11 C 0.09 1.75 2.26 -67.71 -0.15 1.59 16 12 H 0.07 1.37 7.93 -51.93 -0.41 0.95 16 13 C -0.18 -3.08 8.40 37.16 0.31 -2.76 16 14 C 0.03 0.74 4.40 -27.88 -0.12 0.62 16 15 C -0.49 -13.68 8.80 -34.44 -0.30 -13.98 16 16 H 0.06 1.67 7.75 -52.48 -0.41 1.27 16 17 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 18 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 19 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 20 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 C 0.06 0.81 5.18 -3.83 -0.02 0.79 16 24 C -0.10 -1.31 5.26 -26.65 -0.14 -1.45 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.40 2.84 7.96 -40.82 -0.33 2.52 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.57 8.04 -51.93 -0.42 1.15 16 35 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 36 H 0.02 0.38 6.57 -51.93 -0.34 0.03 16 37 H 0.09 1.86 6.28 -51.93 -0.33 1.53 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.57 6.93 -51.93 -0.36 0.21 16 40 H 0.05 0.92 6.44 -51.93 -0.33 0.58 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.62 6.39 -51.93 -0.33 0.29 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.02 0.33 6.98 -51.93 -0.36 -0.03 16 45 H 0.07 1.04 7.98 -51.93 -0.41 0.63 16 46 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 47 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -32.83 363.06 -9.46 -42.29 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.64 Total: -1.26 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -0.80 Total: -9.46 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.56 Total: -44.94 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.83 -9.46 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351187023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.056 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds