Wall clock time and date at job start Tue Mar 31 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47520 * 2 1 4 4 N 1.46503 * 109.47223 * 119.99815 * 2 1 3 5 5 C 1.46001 * 118.54152 * 119.97636 * 4 2 1 6 6 C 1.52965 * 110.04929 * 161.86422 * 5 4 2 7 7 N 1.47189 * 108.74276 * 50.28026 * 6 5 4 8 8 C 1.46900 * 110.99998 * 167.64936 * 7 6 5 9 9 C 1.53001 * 109.46866 * 207.70072 * 8 7 6 10 10 C 1.52997 * 109.46923 * 54.33018 * 9 8 7 11 11 C 1.52995 * 109.47189 * 294.32351 * 9 8 7 12 12 C 1.53004 * 109.46959 * 174.32792 * 9 8 7 13 13 C 1.50696 * 109.47389 * 179.97438 * 12 9 8 14 14 H 1.08000 * 119.99685 * 0.02562 * 13 12 9 15 15 C 1.37880 * 120.00462 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99444 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00238 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47183 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47018 * 120.00084 * 17 15 13 20 20 H 1.48498 * 109.47085 * 240.00557 * 17 15 13 21 21 C 1.46897 * 110.17481 * 291.01562 * 7 6 5 22 22 C 1.33722 * 118.53671 * 300.00637 * 4 2 1 23 23 O 1.21287 * 118.62276 * 1.65815 * 22 4 2 24 24 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47252 * 300.00314 * 1 2 3 26 26 H 1.09003 * 109.46761 * 60.00050 * 1 2 3 27 27 H 1.08999 * 109.47252 * 239.99685 * 2 1 3 28 28 H 1.08990 * 109.47424 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46561 * 299.99902 * 3 2 1 30 30 H 1.08997 * 109.46618 * 59.99455 * 3 2 1 31 31 H 1.09003 * 109.37930 * 282.04213 * 5 4 2 32 32 H 1.09008 * 109.37464 * 41.80212 * 5 4 2 33 33 H 1.09001 * 109.57395 * 290.51142 * 6 5 4 34 34 H 1.09001 * 109.60328 * 170.06793 * 6 5 4 35 35 H 1.09003 * 109.46890 * 87.70694 * 8 7 6 36 36 H 1.08996 * 109.47184 * 327.70239 * 8 7 6 37 37 H 1.09006 * 109.46876 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47090 * 299.99269 * 10 9 8 39 39 H 1.08998 * 109.47588 * 59.99942 * 10 9 8 40 40 H 1.08995 * 109.47578 * 313.89935 * 11 9 8 41 41 H 1.09003 * 109.47256 * 73.90492 * 11 9 8 42 42 H 1.09007 * 109.47291 * 193.89751 * 11 9 8 43 43 H 1.09001 * 109.47340 * 59.99635 * 12 9 8 44 44 H 1.09005 * 109.47218 * 300.00452 * 12 9 8 45 45 H 0.97001 * 120.00250 * 179.97438 * 16 15 13 46 46 H 1.09004 * 109.38831 * 170.45060 * 21 7 6 47 47 H 1.09000 * 109.39201 * 290.14821 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8551 -1.8748 1.0253 6 6 3.6134 -2.1723 2.3200 7 7 2.6562 -2.1783 3.4381 8 6 3.2662 -2.7410 4.6503 9 6 2.1780 -3.3661 5.5256 10 6 1.3802 -4.3788 4.7019 11 6 1.2398 -2.2696 6.0338 12 6 2.8263 -4.0749 6.7165 13 6 1.7546 -4.6901 7.5791 14 1 0.7151 -4.5863 7.3050 15 6 2.1011 -5.3864 8.7176 16 7 3.3669 -5.5132 9.0510 17 14 0.7727 -6.1495 9.7863 18 1 -0.5605 -5.8661 9.1968 19 1 0.9791 -7.6183 9.8592 20 1 0.8434 -5.5713 11.1523 21 6 2.1549 -0.8194 3.6831 22 6 1.6774 -0.2086 2.3960 23 8 0.9528 0.7626 2.4475 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 2.2265 -2.7280 0.7702 32 1 3.5702 -1.6994 0.2215 33 1 4.3663 -1.4021 2.4875 34 1 4.0951 -3.1473 2.2459 35 1 3.7685 -1.9488 5.2055 36 1 3.9914 -3.5052 4.3709 37 1 0.6052 -4.8245 5.3256 38 1 0.9183 -3.8738 3.8535 39 1 2.0486 -5.1600 4.3399 40 1 1.8285 -1.4298 6.4028 41 1 0.5986 -1.9336 5.2189 42 1 0.6236 -2.6643 6.8417 43 1 3.3948 -3.3534 7.3034 44 1 3.4948 -4.8561 6.3545 45 1 3.6108 -6.0028 9.8521 46 1 1.3282 -0.8611 4.3924 47 1 2.9557 -0.2077 4.0987 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356929593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:52 Heat of formation + Delta-G solvation = -32.684695 kcal Electronic energy + Delta-G solvation = -23789.068019 eV Core-core repulsion = 20585.816590 eV Total energy + Delta-G solvation = -3203.251430 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.76663 -38.17323 -36.30780 -35.31751 -32.65543 -31.75628 -29.77832 -27.60103 -27.27480 -26.95012 -26.23388 -24.30745 -23.70174 -22.23804 -21.26632 -18.44577 -17.92642 -17.15904 -16.30181 -16.23667 -15.80600 -15.16579 -14.79087 -14.37276 -14.28474 -13.95756 -13.61189 -13.35073 -13.29270 -12.80114 -12.70139 -12.38436 -12.29166 -12.12774 -11.96545 -11.80567 -11.76800 -11.40803 -11.28296 -11.05892 -10.96829 -10.76050 -10.68681 -10.37956 -10.32082 -10.03492 -9.68625 -9.47838 -8.97151 -8.87306 -8.75750 -8.32225 -8.21956 -5.96918 -3.96590 2.64751 2.89436 3.32767 3.40862 3.44599 3.88923 4.45110 4.49428 4.68343 4.86146 4.93084 5.01946 5.06794 5.18387 5.33619 5.39283 5.43368 5.52134 5.55558 5.61415 5.64065 5.68678 5.75474 5.80399 5.84987 6.00091 6.10466 6.17852 6.23685 6.26754 6.51525 6.53178 6.67952 6.74150 6.85114 7.00374 7.08227 7.23550 7.30619 7.37482 7.43051 7.69687 7.83996 8.03486 8.19190 8.48055 9.08951 9.66350 11.14784 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035392 B = 0.003639 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.946522 B = 7692.922890 C = 7927.332547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 C -0.169 4.169 4 N -0.601 5.601 5 C 0.120 3.880 6 C 0.033 3.967 7 N -0.522 5.522 8 C 0.063 3.937 9 C -0.053 4.053 10 C -0.114 4.114 11 C -0.137 4.137 12 C 0.034 3.966 13 C -0.505 4.505 14 H 0.060 0.940 15 C 0.054 3.946 16 N -0.898 5.898 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.022 3.978 22 C 0.527 3.473 23 O -0.549 6.549 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.096 0.904 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.013 0.987 44 H 0.014 0.986 45 H 0.258 0.742 46 H 0.132 0.868 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 9.027 -18.640 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.038 3.962 3 C -0.227 4.227 4 N -0.335 5.335 5 C -0.003 4.003 6 C -0.096 4.096 7 N -0.248 5.248 8 C -0.063 4.063 9 C -0.053 4.053 10 C -0.171 4.171 11 C -0.193 4.193 12 C -0.004 4.004 13 C -0.544 4.544 14 H 0.078 0.922 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.715 3.285 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.212 1.212 21 C -0.108 4.108 22 C 0.315 3.685 23 O -0.427 6.427 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.068 0.932 46 H 0.149 0.851 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.330 9.149 -18.608 20.738 hybrid contribution 0.278 -0.131 0.885 0.937 sum -0.052 9.017 -17.723 19.885 Atomic orbital electron populations 1.22217 0.94726 1.02244 1.03598 1.21024 0.95027 0.93284 0.86911 1.22205 1.00577 0.96286 1.03629 1.47590 1.51135 1.28825 1.05918 1.21544 0.93561 0.87519 0.97667 1.22542 0.93721 1.02352 0.90959 1.62561 1.36364 1.18854 1.07004 1.22476 0.96936 0.98014 0.88920 1.20588 0.94198 0.95086 0.95458 1.21575 0.99614 0.97617 0.98316 1.22049 0.99313 0.97633 1.00342 1.19128 0.95691 0.94703 0.90865 1.21271 0.93310 1.32519 1.07281 0.92157 1.25010 0.95112 0.96629 0.97841 1.69971 1.15790 1.42446 1.25576 0.86614 0.82358 0.78993 0.80527 1.19736 1.21187 1.21195 1.22850 1.03089 0.89439 0.95403 1.20244 0.79887 0.83334 0.84988 1.90617 1.37151 1.27672 1.87278 0.92808 0.89814 0.92233 0.90048 0.93112 0.92014 0.90102 0.90877 0.90806 0.94200 0.88598 0.94435 0.91054 0.92755 0.93727 0.94387 0.94390 0.93953 0.91224 0.96913 0.96716 0.93234 0.85107 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.09 37.16 0.34 -1.47 16 2 C 0.14 1.40 3.24 -67.93 -0.22 1.18 16 3 C -0.17 -1.68 9.09 37.16 0.34 -1.34 16 4 N -0.60 -6.87 2.80 -167.00 -0.47 -7.34 16 5 C 0.12 1.11 6.49 -4.33 -0.03 1.08 16 6 C 0.03 0.34 5.55 -3.68 -0.02 0.32 16 7 N -0.52 -7.07 3.58 -236.12 -0.85 -7.92 16 8 C 0.06 1.00 4.21 -3.82 -0.02 0.99 16 9 C -0.05 -1.01 0.61 -154.51 -0.09 -1.10 16 10 C -0.11 -2.13 7.95 37.16 0.30 -1.83 16 11 C -0.14 -2.53 6.93 37.16 0.26 -2.27 16 12 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 13 C -0.51 -13.58 7.45 -34.44 -0.26 -13.84 16 14 H 0.06 1.59 5.78 -52.49 -0.30 1.29 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.02 0.31 5.01 -5.19 -0.03 0.28 16 22 C 0.53 7.42 6.98 -11.67 -0.08 7.34 16 23 O -0.55 -9.03 12.68 5.55 0.07 -8.96 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 1.13 5.93 -51.93 -0.31 0.82 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.63 7.84 -51.93 -0.41 0.23 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.02 6.05 -51.93 -0.31 0.71 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.51 8.09 -51.92 -0.42 0.09 16 33 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.10 0.91 7.74 -51.93 -0.40 0.51 16 35 H 0.04 0.60 7.62 -51.93 -0.40 0.20 16 36 H 0.07 1.11 7.57 -51.93 -0.39 0.72 16 37 H 0.05 1.11 6.62 -51.93 -0.34 0.76 16 38 H 0.04 0.76 7.46 -51.93 -0.39 0.38 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 41 H 0.04 0.72 5.89 -51.93 -0.31 0.41 16 42 H 0.07 1.44 6.29 -51.93 -0.33 1.11 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.13 1.99 4.39 -51.93 -0.23 1.76 16 47 H 0.07 0.88 7.89 -51.93 -0.41 0.47 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -30.20 349.90 -8.27 -38.46 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.29 Total: -1.67 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 0.28 Total: -8.52 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: -0.58 Total: -41.02 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.07 Total: -8.96 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.20 -8.27 -38.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356929593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.780 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds