Wall clock time and date at job start Tue Mar 31 2020 06:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47520 * 2 1 4 4 N 1.46503 * 109.47223 * 119.99815 * 2 1 3 5 5 C 1.46001 * 118.54152 * 119.97636 * 4 2 1 6 6 C 1.52965 * 110.04929 * 161.86422 * 5 4 2 7 7 N 1.47189 * 108.74276 * 50.28026 * 6 5 4 8 8 C 1.46900 * 110.99998 * 167.64936 * 7 6 5 9 9 C 1.53001 * 109.46866 * 207.70072 * 8 7 6 10 10 C 1.52997 * 109.46923 * 54.33018 * 9 8 7 11 11 C 1.52995 * 109.47189 * 294.32351 * 9 8 7 12 12 C 1.53004 * 109.46959 * 174.32792 * 9 8 7 13 13 C 1.50696 * 109.47389 * 179.97438 * 12 9 8 14 14 H 1.08000 * 119.99685 * 0.02562 * 13 12 9 15 15 C 1.37880 * 120.00462 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99444 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00238 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47183 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47018 * 120.00084 * 17 15 13 20 20 H 1.48498 * 109.47085 * 240.00557 * 17 15 13 21 21 C 1.46897 * 110.17481 * 291.01562 * 7 6 5 22 22 C 1.33722 * 118.53671 * 300.00637 * 4 2 1 23 23 O 1.21287 * 118.62276 * 1.65815 * 22 4 2 24 24 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47252 * 300.00314 * 1 2 3 26 26 H 1.09003 * 109.46761 * 60.00050 * 1 2 3 27 27 H 1.08999 * 109.47252 * 239.99685 * 2 1 3 28 28 H 1.08990 * 109.47424 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46561 * 299.99902 * 3 2 1 30 30 H 1.08997 * 109.46618 * 59.99455 * 3 2 1 31 31 H 1.09003 * 109.37930 * 282.04213 * 5 4 2 32 32 H 1.09008 * 109.37464 * 41.80212 * 5 4 2 33 33 H 1.09001 * 109.57395 * 290.51142 * 6 5 4 34 34 H 1.09001 * 109.60328 * 170.06793 * 6 5 4 35 35 H 1.09003 * 109.46890 * 87.70694 * 8 7 6 36 36 H 1.08996 * 109.47184 * 327.70239 * 8 7 6 37 37 H 1.09006 * 109.46876 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.47090 * 299.99269 * 10 9 8 39 39 H 1.08998 * 109.47588 * 59.99942 * 10 9 8 40 40 H 1.08995 * 109.47578 * 313.89935 * 11 9 8 41 41 H 1.09003 * 109.47256 * 73.90492 * 11 9 8 42 42 H 1.09007 * 109.47291 * 193.89751 * 11 9 8 43 43 H 1.09001 * 109.47340 * 59.99635 * 12 9 8 44 44 H 1.09005 * 109.47218 * 300.00452 * 12 9 8 45 45 H 0.97001 * 120.00250 * 179.97438 * 16 15 13 46 46 H 1.09004 * 109.38831 * 170.45060 * 21 7 6 47 47 H 1.09000 * 109.39201 * 290.14821 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8551 -1.8748 1.0253 6 6 3.6134 -2.1723 2.3200 7 7 2.6562 -2.1783 3.4381 8 6 3.2662 -2.7410 4.6503 9 6 2.1780 -3.3661 5.5256 10 6 1.3802 -4.3788 4.7019 11 6 1.2398 -2.2696 6.0338 12 6 2.8263 -4.0749 6.7165 13 6 1.7546 -4.6901 7.5791 14 1 0.7151 -4.5863 7.3050 15 6 2.1011 -5.3864 8.7176 16 7 3.3669 -5.5132 9.0510 17 14 0.7727 -6.1495 9.7863 18 1 -0.5605 -5.8661 9.1968 19 1 0.9791 -7.6183 9.8592 20 1 0.8434 -5.5713 11.1523 21 6 2.1549 -0.8194 3.6831 22 6 1.6774 -0.2086 2.3960 23 8 0.9528 0.7626 2.4475 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 2.2265 -2.7280 0.7702 32 1 3.5702 -1.6994 0.2215 33 1 4.3663 -1.4021 2.4875 34 1 4.0951 -3.1473 2.2459 35 1 3.7685 -1.9488 5.2055 36 1 3.9914 -3.5052 4.3709 37 1 0.6052 -4.8245 5.3256 38 1 0.9183 -3.8738 3.8535 39 1 2.0486 -5.1600 4.3399 40 1 1.8285 -1.4298 6.4028 41 1 0.5986 -1.9336 5.2189 42 1 0.6236 -2.6643 6.8417 43 1 3.3948 -3.3534 7.3034 44 1 3.4948 -4.8561 6.3545 45 1 3.6108 -6.0028 9.8521 46 1 1.3282 -0.8611 4.3924 47 1 2.9557 -0.2077 4.0987 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356929593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:52 Heat of formation + Delta-G solvation = -50.641102 kcal Electronic energy + Delta-G solvation = -23789.846668 eV Core-core repulsion = 20585.816590 eV Total energy + Delta-G solvation = -3204.030078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76283 -39.46919 -37.40131 -36.56539 -34.44102 -32.96745 -30.77335 -29.12733 -28.55994 -28.06780 -27.74177 -25.70793 -24.87871 -23.70954 -22.15278 -19.60444 -19.33127 -18.31238 -18.09938 -17.21412 -16.88930 -16.61538 -16.00448 -15.85207 -15.38696 -14.97492 -14.77511 -14.71250 -14.32609 -14.22374 -13.96436 -13.89619 -13.45687 -13.32432 -13.15285 -13.00036 -12.80506 -12.67426 -12.63851 -12.41261 -12.31977 -12.14113 -12.10730 -11.94544 -11.83051 -11.72166 -11.31972 -10.86084 -10.80588 -10.48214 -10.36204 -9.65665 -9.34139 -8.12384 -6.17949 1.40349 1.42264 1.53704 1.59217 2.02665 2.44836 2.81504 3.21996 3.55039 3.86771 3.96679 4.08327 4.14962 4.19567 4.26503 4.34537 4.40193 4.42029 4.52871 4.58167 4.71482 4.77848 4.79066 4.84167 4.85450 4.93617 4.96689 4.98732 5.05251 5.10165 5.22528 5.26083 5.30659 5.39762 5.55693 5.58611 5.63484 5.65833 5.69317 5.84849 5.95831 5.99186 6.04541 6.40188 6.49216 6.97212 7.18236 7.48936 8.99878 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035392 B = 0.003639 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.946522 B = 7692.922890 C = 7927.332547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.135 3.865 3 C -0.164 4.164 4 N -0.597 5.597 5 C 0.120 3.880 6 C 0.030 3.970 7 N -0.524 5.524 8 C 0.075 3.925 9 C -0.050 4.050 10 C -0.102 4.102 11 C -0.128 4.128 12 C 0.041 3.959 13 C -0.512 4.512 14 H 0.063 0.937 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.951 3.049 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.284 1.284 21 C 0.025 3.975 22 C 0.522 3.478 23 O -0.580 6.580 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.111 0.889 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.040 0.960 41 H 0.060 0.940 42 H 0.043 0.957 43 H -0.015 1.015 44 H -0.009 1.009 45 H 0.259 0.741 46 H 0.115 0.885 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 8.913 -21.085 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.033 3.967 3 C -0.222 4.222 4 N -0.329 5.329 5 C -0.003 4.003 6 C -0.098 4.098 7 N -0.250 5.250 8 C -0.052 4.052 9 C -0.051 4.051 10 C -0.160 4.160 11 C -0.185 4.185 12 C 0.004 3.996 13 C -0.550 4.550 14 H 0.081 0.919 15 C -0.199 4.199 16 N -0.578 5.578 17 Si 0.777 3.223 18 H -0.188 1.188 19 H -0.208 1.208 20 H -0.210 1.210 21 C -0.105 4.105 22 C 0.310 3.690 23 O -0.461 6.461 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.134 0.866 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.064 0.936 34 H 0.129 0.871 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.003 0.997 44 H 0.009 0.991 45 H 0.068 0.932 46 H 0.132 0.868 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.462 9.024 -21.090 22.944 hybrid contribution 0.343 -0.072 1.586 1.624 sum -0.120 8.952 -19.504 21.460 Atomic orbital electron populations 1.22158 0.95456 1.01857 1.02944 1.21250 0.94518 0.93586 0.87324 1.22138 1.00900 0.96199 1.02935 1.47699 1.50582 1.29095 1.05510 1.21747 0.93956 0.86753 0.97798 1.22690 0.93434 1.03526 0.90112 1.62450 1.37328 1.18543 1.06635 1.22177 0.95530 0.97978 0.89546 1.20452 0.95108 0.95221 0.94271 1.21453 0.98833 0.97398 0.98296 1.21952 0.99075 0.97358 1.00082 1.18993 0.94709 0.93594 0.92335 1.21647 0.93984 1.31866 1.07479 0.91932 1.25845 0.97145 0.97441 0.99446 1.70095 1.17739 1.43644 1.26283 0.85595 0.79974 0.78065 0.78633 1.18770 1.20764 1.20959 1.22722 1.02599 0.89730 0.95471 1.20219 0.79835 0.83146 0.85786 1.90620 1.38607 1.29048 1.87780 0.92984 0.93099 0.90247 0.86613 0.92439 0.90157 0.93327 0.90273 0.87259 0.93613 0.87097 0.94831 0.90532 0.94915 0.91793 0.94390 0.94096 0.92096 0.93756 0.99684 0.99070 0.93206 0.86751 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 9.09 71.98 0.65 -2.58 16 2 C 0.14 2.30 3.24 44.99 0.15 2.45 16 3 C -0.16 -2.90 9.09 71.98 0.65 -2.24 16 4 N -0.60 -12.07 2.80 -801.26 -2.24 -14.31 16 5 C 0.12 1.73 6.49 86.46 0.56 2.29 16 6 C 0.03 0.54 5.55 86.24 0.48 1.02 16 7 N -0.52 -13.22 3.58 -900.94 -3.23 -16.45 16 8 C 0.08 2.32 4.21 86.30 0.36 2.68 16 9 C -0.05 -1.91 0.61 -52.18 -0.03 -1.94 16 10 C -0.10 -3.75 7.95 71.98 0.57 -3.18 16 11 C -0.13 -4.76 6.93 71.98 0.50 -4.26 16 12 C 0.04 2.07 4.04 29.85 0.12 2.19 16 13 C -0.51 -28.00 7.45 25.60 0.19 -27.81 16 14 H 0.06 3.34 5.78 -2.91 -0.02 3.32 16 15 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 16 N -0.94 -56.45 13.29 21.45 0.28 -56.17 16 17 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 C 0.03 0.68 5.01 85.42 0.43 1.10 16 22 C 0.52 14.14 6.98 87.68 0.61 14.75 16 23 O -0.58 -19.15 12.68 -3.05 -0.04 -19.19 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 1.35 5.93 -2.39 -0.01 1.34 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.12 1.23 7.84 -2.39 -0.02 1.21 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.20 6.05 -2.39 -0.01 1.19 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 0.90 8.09 -2.38 -0.02 0.89 16 33 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 34 H 0.11 1.70 7.74 -2.39 -0.02 1.68 16 35 H 0.03 1.06 7.62 -2.39 -0.02 1.04 16 36 H 0.08 2.29 7.57 -2.39 -0.02 2.27 16 37 H 0.03 1.31 6.62 -2.38 -0.02 1.30 16 38 H 0.06 2.08 7.46 -2.39 -0.02 2.06 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 1.46 7.90 -2.39 -0.02 1.44 16 41 H 0.06 2.04 5.89 -2.39 -0.01 2.02 16 42 H 0.04 1.85 6.29 -2.38 -0.01 1.83 16 43 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 44 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 45 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.11 3.44 4.39 -2.38 -0.01 3.43 16 47 H 0.07 1.78 7.89 -2.39 -0.02 1.76 16 Total: -1.00 -67.15 349.90 3.44 -63.71 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.93 Total: 11.13 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 5.71 Total: -15.19 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -5.18 Total: -86.92 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.04 Total: -19.19 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -67.15 3.44 -63.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356929593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.066 kcal (2) G-P(sol) polarization free energy of solvation -67.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds