Wall clock time and date at job start Tue Mar 31 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47303 * 2 1 4 4 H 1.09007 * 110.06811 * 304.17771 * 3 2 1 5 5 C 1.53993 * 109.92103 * 182.97332 * 3 2 1 6 6 C 1.54592 * 105.14084 * 239.42519 * 5 3 2 7 7 H 1.08992 * 110.72786 * 96.39949 * 6 5 3 8 8 C 1.53001 * 110.72429 * 219.68195 * 6 5 3 9 9 C 1.54942 * 102.92156 * 338.03724 * 6 5 3 10 10 N 1.47904 * 109.91669 * 65.38131 * 3 2 1 11 11 C 1.46895 * 110.99872 * 265.19706 * 10 3 2 12 12 C 1.53003 * 109.46946 * 177.50851 * 11 10 3 13 13 C 1.50698 * 109.47376 * 182.91629 * 12 11 10 14 14 O 1.21288 * 120.00060 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00421 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99714 * 0.02562 * 15 13 12 17 17 C 1.46498 * 120.00559 * 180.02562 * 15 13 12 18 18 C 1.50704 * 109.46933 * 89.99929 * 17 15 13 19 19 H 1.07999 * 119.99836 * 0.02562 * 18 17 15 20 20 C 1.37879 * 119.99904 * 180.02562 * 18 17 15 21 21 N 1.31510 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99967 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46896 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46978 * 59.99605 * 22 20 18 25 25 H 1.48496 * 109.47016 * 299.99465 * 22 20 18 26 26 H 1.08998 * 109.46740 * 292.38119 * 1 2 3 27 27 H 1.08994 * 109.46906 * 52.37939 * 1 2 3 28 28 H 1.09002 * 109.46995 * 172.38139 * 1 2 3 29 29 H 1.09009 * 109.46961 * 240.00123 * 2 1 3 30 30 H 1.08996 * 109.47694 * 120.00300 * 2 1 3 31 31 H 1.08999 * 110.31230 * 120.50213 * 5 3 2 32 32 H 1.09003 * 110.30701 * 358.33643 * 5 3 2 33 33 H 1.09002 * 109.47571 * 174.95170 * 8 6 5 34 34 H 1.09000 * 109.47095 * 294.95655 * 8 6 5 35 35 H 1.09009 * 109.47181 * 54.95371 * 8 6 5 36 36 H 1.08999 * 110.67059 * 278.98423 * 9 6 5 37 37 H 1.09001 * 110.81039 * 155.91584 * 9 6 5 38 38 H 1.09001 * 109.47422 * 57.51589 * 11 10 3 39 39 H 1.08996 * 109.47897 * 297.50932 * 11 10 3 40 40 H 1.09000 * 109.47257 * 62.91987 * 12 11 10 41 41 H 1.09003 * 109.47423 * 302.92192 * 12 11 10 42 42 H 1.09002 * 109.47121 * 269.99791 * 16 15 13 43 43 H 1.08995 * 109.47352 * 29.99841 * 16 15 13 44 44 H 1.08997 * 109.47262 * 149.99947 * 16 15 13 45 45 H 1.09006 * 109.46563 * 330.00262 * 17 15 13 46 46 H 1.08995 * 109.47336 * 210.00147 * 17 15 13 47 47 H 0.97002 * 119.99884 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6225 1.9868 -0.8471 5 6 3.5781 1.4551 -0.0751 6 6 4.0386 2.1952 1.2017 7 1 4.2936 1.4851 1.9883 8 6 5.2221 3.1157 0.8968 9 6 2.7879 3.0216 1.5933 10 7 1.6619 2.1106 1.2642 11 6 0.4073 2.8589 1.1092 12 6 0.0171 3.4834 2.4504 13 6 -1.3060 4.1909 2.3091 14 8 -1.8805 4.1948 1.2410 15 7 -1.8509 4.8192 3.3696 16 6 -1.1566 4.8149 4.6597 17 6 -3.1373 5.5066 3.2325 18 6 -4.2557 4.5464 3.5460 19 1 -4.0307 3.5263 3.8203 20 6 -5.5663 4.9702 3.4824 21 7 -5.8402 6.2124 3.1488 22 14 -6.9526 3.7802 3.8717 23 1 -8.2566 4.4769 3.7325 24 1 -6.8029 3.2841 5.2634 25 1 -6.9002 2.6339 2.9292 26 1 -0.3633 0.3913 0.9503 27 1 -0.3633 0.6273 -0.8139 28 1 -0.3633 -1.0186 -0.1362 29 1 1.8934 -0.5139 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.9091 1.9922 -0.9639 32 1 3.9649 0.4361 -0.0820 33 1 5.4724 3.6927 1.7871 34 1 6.0819 2.5155 0.5992 35 1 4.9551 3.7947 0.0869 36 1 2.7294 3.9350 1.0012 37 1 2.7955 3.2547 2.6580 38 1 -0.3813 2.1820 0.7806 39 1 0.5429 3.6461 0.3677 40 1 0.7811 4.1990 2.7540 41 1 -0.0680 2.7009 3.2046 42 1 -1.4744 3.9490 5.2404 43 1 -0.0806 4.7657 4.4931 44 1 -1.3984 5.7269 5.2055 45 1 -3.2471 5.8714 2.2112 46 1 -3.1756 6.3475 3.9248 47 1 -5.1203 6.8304 2.9470 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357015877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:14 Heat of formation + Delta-G solvation = -52.016690 kcal Electronic energy + Delta-G solvation = -23088.968979 eV Core-core repulsion = 19884.879251 eV Total energy + Delta-G solvation = -3204.089728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.86135 -38.82717 -35.01367 -34.26655 -33.57054 -32.77922 -30.28932 -28.64919 -27.34808 -26.22206 -25.46541 -23.90198 -22.88582 -21.40727 -20.53470 -20.16539 -18.41502 -16.95490 -16.54958 -15.95225 -15.57272 -15.35659 -15.11284 -14.60743 -14.05096 -13.70334 -13.68349 -13.35310 -13.18274 -13.01429 -12.64127 -12.49693 -12.35560 -12.25666 -12.15260 -11.93054 -11.85347 -11.53174 -11.29769 -11.12174 -11.01386 -10.92823 -10.85911 -10.63210 -10.57282 -10.55782 -10.32100 -10.08343 -9.11240 -8.96524 -8.46718 -8.36985 -7.60330 -6.37091 -4.08620 3.38151 3.44746 3.48649 3.65184 3.68237 4.10446 4.36116 4.47450 4.55671 4.71364 4.86068 5.11800 5.15037 5.16079 5.21281 5.27285 5.28748 5.39113 5.39793 5.44148 5.48809 5.55059 5.56456 5.62957 5.70319 5.77585 5.80632 5.89662 5.92247 5.94808 5.98198 6.02850 6.09746 6.12560 6.15209 6.27433 6.42711 6.80942 6.89012 7.03803 7.13575 7.41771 8.05858 8.30367 8.45160 8.79391 9.03425 9.61069 11.00314 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023829 B = 0.003642 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.768812 B = 7687.219321 C = 8430.255309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.104 4.104 3 C 0.065 3.935 4 H 0.053 0.947 5 C -0.123 4.123 6 C -0.096 4.096 7 H 0.082 0.918 8 C -0.143 4.143 9 C 0.036 3.964 10 N -0.512 5.512 11 C 0.057 3.943 12 C -0.133 4.133 13 C 0.505 3.495 14 O -0.545 6.545 15 N -0.600 5.600 16 C 0.087 3.913 17 C 0.235 3.765 18 C -0.605 4.605 19 H 0.051 0.949 20 C 0.019 3.981 21 N -0.910 5.910 22 Si 1.072 2.928 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.287 1.287 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.033 0.967 46 H 0.020 0.980 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.754 -8.755 -2.441 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.142 4.142 3 C -0.043 4.043 4 H 0.071 0.929 5 C -0.161 4.161 6 C -0.115 4.115 7 H 0.100 0.900 8 C -0.201 4.201 9 C -0.092 4.092 10 N -0.236 5.236 11 C -0.071 4.071 12 C -0.173 4.173 13 C 0.291 3.709 14 O -0.423 6.423 15 N -0.332 5.332 16 C -0.057 4.057 17 C 0.115 3.885 18 C -0.644 4.644 19 H 0.069 0.931 20 C -0.185 4.185 21 N -0.546 5.546 22 Si 0.900 3.100 23 H -0.207 1.207 24 H -0.214 1.214 25 H -0.214 1.214 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.051 0.949 46 H 0.038 0.962 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.671 -9.234 -2.479 21.872 hybrid contribution 1.745 0.782 -0.544 1.988 sum 21.416 -8.452 -3.023 23.221 Atomic orbital electron populations 1.21886 0.95641 1.01226 1.02598 1.21499 0.96264 0.94927 1.01512 1.22426 0.94505 0.95962 0.91454 0.92937 1.22554 0.94654 1.01087 0.97818 1.22052 0.94463 0.97275 0.97688 0.89981 1.21781 0.97508 0.99225 1.01582 1.23333 0.90097 0.94496 1.01287 1.64670 1.02161 1.26767 1.29996 1.22169 0.92120 0.97015 0.95760 1.21604 0.95682 1.00416 0.99608 1.20336 0.86689 0.79581 0.84245 1.90662 1.63793 1.60601 1.27275 1.47956 1.22791 1.53348 1.09114 1.21613 0.95647 1.02209 0.86218 1.19343 0.79366 0.92383 0.97366 1.22253 0.92618 0.98424 1.51098 0.93078 1.25825 0.99455 0.99030 0.94217 1.70805 1.36280 1.04498 1.43060 0.83506 0.75597 0.74673 0.76268 1.20661 1.21438 1.21375 0.91528 0.93013 0.93108 0.92228 0.91325 0.91569 0.90972 0.92457 0.92552 0.92723 0.93733 0.90089 0.88881 0.94252 0.89991 0.88697 0.93072 0.92427 0.91608 0.94939 0.96177 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 8.54 37.16 0.32 -1.52 16 2 C -0.10 -1.06 5.40 -26.73 -0.14 -1.21 16 3 C 0.06 0.70 2.62 -66.64 -0.17 0.53 16 4 H 0.05 0.62 7.76 -51.93 -0.40 0.22 16 5 C -0.12 -1.07 6.15 -25.38 -0.16 -1.22 16 6 C -0.10 -0.81 3.66 -88.76 -0.32 -1.14 16 7 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 8 C -0.14 -1.02 9.16 37.16 0.34 -0.68 16 9 C 0.04 0.37 5.07 -1.89 -0.01 0.36 16 10 N -0.51 -6.17 4.78 -222.57 -1.06 -7.23 16 11 C 0.06 0.85 3.67 -3.83 -0.01 0.84 16 12 C -0.13 -2.03 4.16 -27.88 -0.12 -2.15 16 13 C 0.51 10.76 7.67 -10.99 -0.08 10.67 16 14 O -0.55 -14.00 15.54 5.55 0.09 -13.91 16 15 N -0.60 -13.12 2.86 -182.95 -0.52 -13.64 16 16 C 0.09 1.42 10.29 59.85 0.62 2.04 16 17 C 0.24 6.28 4.52 -5.19 -0.02 6.26 16 18 C -0.61 -17.77 9.39 -34.44 -0.32 -18.10 16 19 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 20 C 0.02 0.55 5.46 -17.82 -0.10 0.46 16 21 N -0.91 -28.24 13.65 55.43 0.76 -27.48 16 22 Si 1.07 26.04 29.90 -169.99 -5.08 20.95 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H 0.07 0.90 6.46 -51.93 -0.34 0.56 16 27 H 0.05 0.64 8.04 -51.93 -0.42 0.22 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.54 7.82 -51.93 -0.41 0.13 16 32 H 0.07 0.56 7.69 -51.93 -0.40 0.16 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.40 8.11 -51.92 -0.42 -0.02 16 36 H 0.04 0.48 7.83 -51.93 -0.41 0.08 16 37 H 0.08 0.79 7.76 -51.93 -0.40 0.39 16 38 H 0.09 1.53 5.13 -51.93 -0.27 1.27 16 39 H 0.04 0.63 7.99 -51.93 -0.42 0.21 16 40 H 0.08 1.07 6.47 -51.93 -0.34 0.74 16 41 H 0.09 1.38 8.11 -51.93 -0.42 0.96 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.73 6.44 -51.93 -0.33 0.39 16 44 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 45 H 0.03 0.96 7.29 -51.93 -0.38 0.59 16 46 H 0.02 0.54 7.76 -51.93 -0.40 0.13 16 47 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -33.76 364.39 -9.15 -42.91 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -8.62 Total: -2.23 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.19 Total: -4.86 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.83 Total: -48.35 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.76 -9.15 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357015877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.110 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds