Wall clock time and date at job start Tue Mar 31 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47303 * 2 1 4 4 H 1.09007 * 110.06811 * 304.17771 * 3 2 1 5 5 C 1.53993 * 109.92103 * 182.97332 * 3 2 1 6 6 C 1.54592 * 105.14084 * 239.42519 * 5 3 2 7 7 H 1.08992 * 110.72786 * 96.39949 * 6 5 3 8 8 C 1.53001 * 110.72429 * 219.68195 * 6 5 3 9 9 C 1.54942 * 102.92156 * 338.03724 * 6 5 3 10 10 N 1.47904 * 109.91669 * 65.38131 * 3 2 1 11 11 C 1.46895 * 110.99872 * 265.19706 * 10 3 2 12 12 C 1.53003 * 109.46946 * 177.50851 * 11 10 3 13 13 C 1.50698 * 109.47376 * 182.91629 * 12 11 10 14 14 O 1.21288 * 120.00060 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00421 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99714 * 0.02562 * 15 13 12 17 17 C 1.46498 * 120.00559 * 180.02562 * 15 13 12 18 18 C 1.50704 * 109.46933 * 89.99929 * 17 15 13 19 19 H 1.07999 * 119.99836 * 0.02562 * 18 17 15 20 20 C 1.37879 * 119.99904 * 180.02562 * 18 17 15 21 21 N 1.31510 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99967 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46896 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46978 * 59.99605 * 22 20 18 25 25 H 1.48496 * 109.47016 * 299.99465 * 22 20 18 26 26 H 1.08998 * 109.46740 * 292.38119 * 1 2 3 27 27 H 1.08994 * 109.46906 * 52.37939 * 1 2 3 28 28 H 1.09002 * 109.46995 * 172.38139 * 1 2 3 29 29 H 1.09009 * 109.46961 * 240.00123 * 2 1 3 30 30 H 1.08996 * 109.47694 * 120.00300 * 2 1 3 31 31 H 1.08999 * 110.31230 * 120.50213 * 5 3 2 32 32 H 1.09003 * 110.30701 * 358.33643 * 5 3 2 33 33 H 1.09002 * 109.47571 * 174.95170 * 8 6 5 34 34 H 1.09000 * 109.47095 * 294.95655 * 8 6 5 35 35 H 1.09009 * 109.47181 * 54.95371 * 8 6 5 36 36 H 1.08999 * 110.67059 * 278.98423 * 9 6 5 37 37 H 1.09001 * 110.81039 * 155.91584 * 9 6 5 38 38 H 1.09001 * 109.47422 * 57.51589 * 11 10 3 39 39 H 1.08996 * 109.47897 * 297.50932 * 11 10 3 40 40 H 1.09000 * 109.47257 * 62.91987 * 12 11 10 41 41 H 1.09003 * 109.47423 * 302.92192 * 12 11 10 42 42 H 1.09002 * 109.47121 * 269.99791 * 16 15 13 43 43 H 1.08995 * 109.47352 * 29.99841 * 16 15 13 44 44 H 1.08997 * 109.47262 * 149.99947 * 16 15 13 45 45 H 1.09006 * 109.46563 * 330.00262 * 17 15 13 46 46 H 1.08995 * 109.47336 * 210.00147 * 17 15 13 47 47 H 0.97002 * 119.99884 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6225 1.9868 -0.8471 5 6 3.5781 1.4551 -0.0751 6 6 4.0386 2.1952 1.2017 7 1 4.2936 1.4851 1.9883 8 6 5.2221 3.1157 0.8968 9 6 2.7879 3.0216 1.5933 10 7 1.6619 2.1106 1.2642 11 6 0.4073 2.8589 1.1092 12 6 0.0171 3.4834 2.4504 13 6 -1.3060 4.1909 2.3091 14 8 -1.8805 4.1948 1.2410 15 7 -1.8509 4.8192 3.3696 16 6 -1.1566 4.8149 4.6597 17 6 -3.1373 5.5066 3.2325 18 6 -4.2557 4.5464 3.5460 19 1 -4.0307 3.5263 3.8203 20 6 -5.5663 4.9702 3.4824 21 7 -5.8402 6.2124 3.1488 22 14 -6.9526 3.7802 3.8717 23 1 -8.2566 4.4769 3.7325 24 1 -6.8029 3.2841 5.2634 25 1 -6.9002 2.6339 2.9292 26 1 -0.3633 0.3913 0.9503 27 1 -0.3633 0.6273 -0.8139 28 1 -0.3633 -1.0186 -0.1362 29 1 1.8934 -0.5139 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.9091 1.9922 -0.9639 32 1 3.9649 0.4361 -0.0820 33 1 5.4724 3.6927 1.7871 34 1 6.0819 2.5155 0.5992 35 1 4.9551 3.7947 0.0869 36 1 2.7294 3.9350 1.0012 37 1 2.7955 3.2547 2.6580 38 1 -0.3813 2.1820 0.7806 39 1 0.5429 3.6461 0.3677 40 1 0.7811 4.1990 2.7540 41 1 -0.0680 2.7009 3.2046 42 1 -1.4744 3.9490 5.2404 43 1 -0.0806 4.7657 4.4931 44 1 -1.3984 5.7269 5.2055 45 1 -3.2471 5.8714 2.2112 46 1 -3.1756 6.3475 3.9248 47 1 -5.1203 6.8304 2.9470 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357015877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:14 Heat of formation + Delta-G solvation = -73.926170 kcal Electronic energy + Delta-G solvation = -23089.919045 eV Core-core repulsion = 19884.879251 eV Total energy + Delta-G solvation = -3205.039794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05307 -40.22435 -36.85196 -35.23732 -34.95272 -34.47694 -31.43204 -29.75693 -28.95858 -27.40158 -26.80068 -25.31873 -24.41067 -22.66467 -21.31947 -21.02392 -20.05122 -19.08178 -18.03254 -17.26630 -16.73364 -16.53456 -16.35154 -15.94373 -15.65028 -15.33706 -14.68280 -14.42853 -14.35082 -14.13298 -13.92614 -13.64265 -13.62495 -13.57027 -13.35991 -13.30789 -13.01395 -12.97410 -12.80285 -12.51792 -12.46336 -12.13942 -11.96676 -11.91737 -11.64071 -11.37246 -11.35287 -11.28116 -11.22528 -10.74132 -10.64068 -9.51275 -9.44137 -8.72355 -6.48181 1.47636 1.57041 1.71295 1.76941 2.20137 2.52134 2.96677 3.07337 3.59586 3.67335 3.75861 3.92376 4.01545 4.08117 4.16129 4.30041 4.31599 4.42712 4.48089 4.50331 4.63851 4.64613 4.68827 4.70869 4.73069 4.80598 4.85063 4.88276 4.88837 4.93654 4.94254 5.02641 5.08015 5.11563 5.23065 5.31027 5.33939 5.46050 5.47873 5.51898 5.79239 5.98635 6.02676 6.10749 6.41789 6.63097 7.25115 7.37534 8.62589 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023829 B = 0.003642 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.768812 B = 7687.219321 C = 8430.255309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.098 4.098 3 C 0.059 3.941 4 H 0.035 0.965 5 C -0.118 4.118 6 C -0.089 4.089 7 H 0.088 0.912 8 C -0.140 4.140 9 C 0.029 3.971 10 N -0.510 5.510 11 C 0.067 3.933 12 C -0.112 4.112 13 C 0.495 3.505 14 O -0.601 6.601 15 N -0.608 5.608 16 C 0.081 3.919 17 C 0.245 3.755 18 C -0.619 4.619 19 H 0.044 0.956 20 C -0.032 4.032 21 N -0.931 5.931 22 Si 1.119 2.881 23 H -0.278 1.278 24 H -0.260 1.260 25 H -0.280 1.280 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.037 0.963 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.020 0.980 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.070 0.930 45 H -0.009 1.009 46 H 0.020 0.980 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.018 -10.449 -1.048 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.136 4.136 3 C -0.049 4.049 4 H 0.054 0.946 5 C -0.156 4.156 6 C -0.108 4.108 7 H 0.107 0.893 8 C -0.197 4.197 9 C -0.098 4.098 10 N -0.234 5.234 11 C -0.062 4.062 12 C -0.152 4.152 13 C 0.284 3.716 14 O -0.483 6.483 15 N -0.339 5.339 16 C -0.061 4.061 17 C 0.123 3.877 18 C -0.657 4.657 19 H 0.063 0.937 20 C -0.230 4.230 21 N -0.568 5.568 22 Si 0.939 3.061 23 H -0.203 1.203 24 H -0.185 1.185 25 H -0.206 1.206 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.038 0.962 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.089 0.911 45 H 0.009 0.991 46 H 0.038 0.962 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 21.999 -10.928 -1.046 24.586 hybrid contribution 1.088 1.335 -1.009 1.996 sum 23.088 -9.593 -2.054 25.086 Atomic orbital electron populations 1.21857 0.97182 1.01333 1.00825 1.21482 0.94745 0.94766 1.02598 1.22528 0.96245 0.95882 0.90292 0.94650 1.22548 0.92621 1.02177 0.98285 1.22038 0.93998 0.97221 0.97568 0.89344 1.21753 0.97217 0.99060 1.01716 1.23476 0.90234 0.94261 1.01845 1.64700 1.01542 1.26546 1.30610 1.21950 0.93173 0.96131 0.94950 1.21518 0.92520 1.00825 1.00357 1.21430 0.88246 0.78846 0.83104 1.90631 1.65697 1.62492 1.29465 1.48045 1.21468 1.52803 1.11577 1.21936 0.97750 1.02793 0.83614 1.18898 0.81712 0.92401 0.94724 1.22551 0.93798 0.98470 1.50882 0.93715 1.27410 1.02558 0.99793 0.93275 1.70927 1.35839 1.05328 1.44690 0.82923 0.72668 0.72782 0.77679 1.20292 1.18491 1.20587 0.93602 0.94469 0.92032 0.90394 0.90816 0.91085 0.89504 0.91861 0.91399 0.93238 0.94452 0.88972 0.91173 0.96176 0.86733 0.86887 0.92411 0.87917 0.91122 0.99091 0.96220 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 8.54 71.98 0.61 -3.04 16 2 C -0.10 -1.86 5.40 30.59 0.17 -1.69 16 3 C 0.06 1.20 2.62 45.06 0.12 1.32 16 4 H 0.04 0.85 7.76 -2.38 -0.02 0.83 16 5 C -0.12 -1.76 6.15 31.47 0.19 -1.57 16 6 C -0.09 -1.25 3.66 -9.59 -0.04 -1.29 16 7 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 8 C -0.14 -1.58 9.16 71.98 0.66 -0.92 16 9 C 0.03 0.53 5.07 86.65 0.44 0.97 16 10 N -0.51 -11.58 4.78 -858.08 -4.10 -15.68 16 11 C 0.07 1.98 3.67 86.31 0.32 2.30 16 12 C -0.11 -3.28 4.16 29.85 0.12 -3.15 16 13 C 0.49 21.31 7.67 87.66 0.67 21.98 16 14 O -0.60 -32.38 15.54 -3.05 -0.05 -32.43 16 15 N -0.61 -26.63 2.86 -851.13 -2.43 -29.06 16 16 C 0.08 2.46 10.29 127.77 1.31 3.78 16 17 C 0.24 13.52 4.52 85.63 0.39 13.91 16 18 C -0.62 -37.05 9.39 25.60 0.24 -36.81 16 19 H 0.04 2.67 7.81 -2.91 -0.02 2.65 16 20 C -0.03 -1.93 5.46 84.66 0.46 -1.47 16 21 N -0.93 -59.10 13.65 21.45 0.29 -58.80 16 22 Si 1.12 52.21 29.90 68.60 2.05 54.26 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 26 H 0.04 1.26 6.46 -2.39 -0.02 1.24 16 27 H 0.04 0.95 8.04 -2.39 -0.02 0.94 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.00 7.82 -2.39 -0.02 0.98 16 32 H 0.09 1.07 7.69 -2.39 -0.02 1.05 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 0.62 8.11 -2.38 -0.02 0.60 16 36 H 0.04 0.75 7.83 -2.39 -0.02 0.73 16 37 H 0.09 1.48 7.76 -2.39 -0.02 1.46 16 38 H 0.07 2.41 5.13 -2.39 -0.01 2.40 16 39 H 0.02 0.66 7.99 -2.39 -0.02 0.64 16 40 H 0.11 2.62 6.47 -2.39 -0.02 2.60 16 41 H 0.11 2.97 8.11 -2.39 -0.02 2.95 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.10 2.19 6.44 -2.39 -0.02 2.17 16 44 H 0.07 2.08 7.89 -2.39 -0.02 2.06 16 45 H -0.01 -0.56 7.29 -2.38 -0.02 -0.58 16 46 H 0.02 1.08 7.76 -2.39 -0.02 1.07 16 47 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 Total: -1.00 -76.72 364.39 2.45 -74.27 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.01 Total: 13.11 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 5.67 Total: -5.67 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -6.24 Total: -103.54 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.05 Total: -32.43 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.05 Total: 54.26 kcal Total: -76.72 2.45 -74.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357015877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.343 kcal (2) G-P(sol) polarization free energy of solvation -76.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds