Wall clock time and date at job start Tue Mar 31 2020 05:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47037 * 2 1 4 4 H 1.09005 * 109.87801 * 303.50699 * 3 2 1 5 5 C 1.54319 * 109.88912 * 64.70912 * 3 2 1 6 6 C 1.55140 * 103.01644 * 141.68784 * 5 3 2 7 7 H 1.09000 * 110.99263 * 82.47728 * 6 5 3 8 8 C 1.53007 * 110.98681 * 206.25444 * 6 5 3 9 9 C 1.54902 * 101.65509 * 324.34434 * 6 5 3 10 10 N 1.47445 * 109.88472 * 182.48040 * 3 2 1 11 11 C 1.46895 * 111.00474 * 3.84985 * 10 3 2 12 12 C 1.53001 * 109.47430 * 175.12427 * 11 10 3 13 13 C 1.50697 * 109.47249 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99836 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99937 * 179.97438 * 13 12 11 16 16 C 1.46503 * 120.00307 * 0.02562 * 15 13 12 17 17 C 1.46499 * 119.99895 * 179.97438 * 15 13 12 18 18 C 1.50698 * 109.47149 * 90.00732 * 17 15 13 19 19 H 1.07996 * 119.99802 * 359.97438 * 18 17 15 20 20 C 1.37879 * 120.00174 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00103 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99839 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47117 * 59.99641 * 22 20 18 24 24 H 1.48505 * 109.46895 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47160 * 299.99162 * 22 20 18 26 26 H 1.09006 * 109.46817 * 294.36677 * 1 2 3 27 27 H 1.08998 * 109.47533 * 54.36424 * 1 2 3 28 28 H 1.08999 * 109.47246 * 174.37172 * 1 2 3 29 29 H 1.08998 * 109.46929 * 239.99917 * 2 1 3 30 30 H 1.09002 * 109.47417 * 120.00561 * 2 1 3 31 31 H 1.08994 * 110.70474 * 260.07169 * 5 3 2 32 32 H 1.09002 * 110.70469 * 23.30790 * 5 3 2 33 33 H 1.09003 * 109.47027 * 60.00525 * 8 6 5 34 34 H 1.09007 * 109.46652 * 180.02562 * 8 6 5 35 35 H 1.08996 * 109.46943 * 299.99918 * 8 6 5 36 36 H 1.08998 * 110.37847 * 278.24230 * 9 6 5 37 37 H 1.09010 * 110.37656 * 155.89751 * 9 6 5 38 38 H 1.09000 * 109.47113 * 55.12539 * 11 10 3 39 39 H 1.09005 * 109.47177 * 295.12697 * 11 10 3 40 40 H 1.09000 * 109.46880 * 59.99970 * 12 11 10 41 41 H 1.08996 * 109.47056 * 300.00089 * 12 11 10 42 42 H 1.08992 * 109.46669 * 270.00272 * 16 15 13 43 43 H 1.09007 * 109.46701 * 29.99581 * 16 15 13 44 44 H 1.08998 * 109.47528 * 149.99278 * 16 15 13 45 45 H 1.09000 * 109.47392 * 330.00475 * 17 15 13 46 46 H 1.09000 * 109.46999 * 210.00337 * 17 15 13 47 47 H 0.96995 * 120.00059 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6300 1.9806 -0.8548 5 6 1.6304 2.1441 1.3121 6 6 2.8708 3.0146 1.6447 7 1 2.8508 3.9516 1.0881 8 6 2.9694 3.2760 3.1490 9 6 4.0291 2.1063 1.1622 10 7 3.5131 1.4536 -0.0600 11 6 4.0449 0.0909 -0.1936 12 6 5.5630 0.1512 -0.3745 13 6 6.1085 -1.2468 -0.5122 14 8 5.3569 -2.1978 -0.4702 15 7 7.4313 -1.4403 -0.6829 16 6 8.3391 -0.2915 -0.7342 17 6 7.9616 -2.7994 -0.8162 18 6 7.9722 -3.1942 -2.2705 19 1 7.6188 -2.5021 -3.0204 20 6 8.4320 -4.4393 -2.6436 21 7 8.8619 -5.2824 -1.7303 22 14 8.4444 -4.9289 -4.4463 23 1 9.3016 -3.9864 -5.2093 24 1 8.9821 -6.3065 -4.5814 25 1 7.0599 -4.8828 -4.9812 26 1 -0.3633 0.4240 0.9362 27 1 -0.3634 0.5987 -0.8352 28 1 -0.3634 -1.0227 -0.1008 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 0.7513 2.7693 1.1566 32 1 1.4503 1.4129 2.1001 33 1 3.0565 2.3268 3.6778 34 1 3.8472 3.8888 3.3545 35 1 2.0746 3.7991 3.4863 36 1 4.2665 1.3595 1.9198 37 1 4.9096 2.7054 0.9296 38 1 3.5946 -0.3915 -1.0611 39 1 3.8084 -0.4811 0.7038 40 1 6.0134 0.6336 0.4930 41 1 5.7995 0.7230 -1.2718 42 1 8.4402 0.0457 -1.7657 43 1 7.9357 0.5177 -0.1253 44 1 9.3164 -0.5832 -0.3497 45 1 7.3325 -3.4915 -0.2564 46 1 8.9778 -2.8330 -0.4232 47 1 9.1857 -6.1582 -1.9928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357015878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:18 Heat of formation + Delta-G solvation = -44.465844 kcal Electronic energy + Delta-G solvation = -23034.438709 eV Core-core repulsion = 19830.676410 eV Total energy + Delta-G solvation = -3203.762299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.03355 -38.73408 -34.84215 -34.24758 -33.57828 -32.55841 -30.32739 -28.31525 -27.52015 -26.52710 -25.62911 -23.66409 -23.08226 -21.95835 -20.54888 -19.17256 -18.25021 -16.67990 -16.51446 -16.06916 -15.45917 -15.20633 -14.94994 -14.84871 -14.33988 -13.97507 -13.73750 -13.25079 -13.20711 -12.95758 -12.62105 -12.44829 -12.17754 -12.09318 -12.03967 -11.86407 -11.64823 -11.39858 -11.31444 -11.19145 -11.04315 -10.91847 -10.87163 -10.78405 -10.65991 -10.51092 -10.26227 -10.12436 -9.61407 -8.84476 -8.40540 -8.26096 -7.59770 -6.01552 -4.06089 3.34070 3.37984 3.40377 3.50703 3.75370 4.18154 4.39854 4.46220 4.49962 4.65260 4.91462 5.04732 5.15221 5.23322 5.26287 5.29934 5.32451 5.34368 5.35203 5.41994 5.48629 5.56164 5.58606 5.65657 5.70992 5.77655 5.84655 5.86236 5.92112 5.94437 6.01593 6.07976 6.11050 6.18249 6.23884 6.26967 6.32723 7.00092 7.08375 7.10160 7.46699 7.58634 7.94972 8.26894 8.46495 8.93374 9.14589 9.58856 11.06555 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.003572 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.785651 B = 7837.010825 C = 8551.489136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.075 3.925 4 H 0.084 0.916 5 C -0.132 4.132 6 C -0.104 4.104 7 H 0.082 0.918 8 C -0.142 4.142 9 C 0.043 3.957 10 N -0.528 5.528 11 C 0.065 3.935 12 C -0.136 4.136 13 C 0.505 3.495 14 O -0.546 6.546 15 N -0.604 5.604 16 C 0.087 3.913 17 C 0.245 3.755 18 C -0.525 4.525 19 H 0.056 0.944 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.043 0.957 46 H 0.031 0.969 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.696 18.110 7.546 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.033 4.033 4 H 0.102 0.898 5 C -0.170 4.170 6 C -0.123 4.123 7 H 0.100 0.900 8 C -0.199 4.199 9 C -0.084 4.084 10 N -0.251 5.251 11 C -0.063 4.063 12 C -0.176 4.176 13 C 0.291 3.709 14 O -0.424 6.424 15 N -0.336 5.336 16 C -0.058 4.058 17 C 0.126 3.874 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.810 17.669 7.145 22.421 hybrid contribution 0.001 -0.777 -0.374 0.862 sum -11.809 16.892 6.771 21.694 Atomic orbital electron populations 1.21736 0.95646 1.01720 1.01502 1.22181 0.96199 0.96797 1.03198 1.22459 0.87609 0.95579 0.97644 0.89813 1.22944 0.97946 0.98714 0.97408 1.22294 0.94894 0.98753 0.96322 0.89974 1.21719 1.01707 1.01699 0.94817 1.23164 0.97774 0.96695 0.90814 1.63717 1.05886 1.18671 1.36861 1.22083 0.93568 0.88350 1.02253 1.21655 0.96306 0.95956 1.03722 1.20312 0.82616 0.90512 0.77485 1.90658 1.57004 1.43685 1.51034 1.48154 1.06015 1.09282 1.70168 1.21612 0.94529 0.88679 1.00948 1.19281 0.94207 0.76647 0.97261 1.21408 1.42281 1.00146 0.92597 0.92535 1.24940 0.95227 0.96148 0.97836 1.69923 1.42845 1.07740 1.33038 0.86556 0.78445 0.77477 0.84931 1.20241 1.21184 1.20163 0.92945 0.92726 0.92670 0.90546 0.91650 0.91070 0.91301 0.92644 0.92440 0.92573 0.93437 0.90331 0.89491 0.93717 0.90019 0.88865 0.93216 0.92592 0.91527 0.93936 0.95112 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.64 37.16 0.36 -1.01 16 2 C -0.15 -1.64 4.08 -26.73 -0.11 -1.75 16 3 C 0.08 0.80 3.48 -66.72 -0.23 0.57 16 4 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.13 -1.17 5.06 -24.91 -0.13 -1.29 16 6 C -0.10 -0.90 3.63 -88.48 -0.32 -1.22 16 7 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 8 C -0.14 -1.04 9.31 37.16 0.35 -0.70 16 9 C 0.04 0.45 5.00 -2.30 -0.01 0.44 16 10 N -0.53 -6.45 5.20 -223.34 -1.16 -7.61 16 11 C 0.07 0.96 2.96 -3.83 -0.01 0.95 16 12 C -0.14 -2.09 4.22 -27.88 -0.12 -2.20 16 13 C 0.50 10.68 7.67 -10.99 -0.08 10.60 16 14 O -0.55 -13.89 15.56 5.56 0.09 -13.80 16 15 N -0.60 -13.13 2.86 -182.96 -0.52 -13.65 16 16 C 0.09 1.40 10.29 59.85 0.62 2.02 16 17 C 0.25 6.57 5.20 -5.20 -0.03 6.55 16 18 C -0.53 -15.26 9.39 -34.44 -0.32 -15.58 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 22 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 26 H 0.05 0.43 7.55 -51.93 -0.39 0.04 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.98 6.29 -51.93 -0.33 0.66 16 30 H 0.06 0.80 6.95 -51.93 -0.36 0.44 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 33 H 0.05 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.53 7.55 -51.93 -0.39 0.14 16 37 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.09 1.42 6.29 -51.93 -0.33 1.09 16 39 H 0.04 0.71 6.71 -51.93 -0.35 0.36 16 40 H 0.08 1.08 6.58 -51.93 -0.34 0.74 16 41 H 0.09 1.36 8.11 -51.93 -0.42 0.94 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 44 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 45 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 46 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -32.77 363.96 -9.16 -41.92 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.62 Total: -2.24 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.14 Total: -0.97 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.95 Total: -47.59 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.77 -9.16 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357015878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.544 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds