Wall clock time and date at job start Tue Mar 31 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47219 * 2 1 4 4 H 1.09001 * 110.72142 * 300.91344 * 3 2 1 5 5 C 1.54934 * 110.66791 * 177.82034 * 3 2 1 6 6 C 1.54591 * 102.92343 * 204.14854 * 5 3 2 7 7 H 1.08993 * 110.31504 * 263.04323 * 6 5 3 8 8 C 1.52998 * 110.39684 * 140.91322 * 6 5 3 9 9 C 1.53995 * 105.13801 * 21.95736 * 6 5 3 10 10 N 1.47897 * 107.05898 * 1.22349 * 9 6 5 11 11 C 1.46903 * 111.00304 * 214.15518 * 10 9 6 12 12 C 1.53002 * 109.46634 * 73.25644 * 11 10 9 13 13 C 1.50700 * 109.46892 * 185.76163 * 12 11 10 14 14 O 1.21281 * 120.00344 * 359.97438 * 13 12 11 15 15 N 1.34784 * 120.00188 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99737 * 359.97438 * 15 13 12 17 17 C 1.46494 * 119.99946 * 179.97438 * 15 13 12 18 18 C 1.50700 * 109.47066 * 90.00095 * 17 15 13 19 19 H 1.08005 * 120.00281 * 359.97438 * 18 17 15 20 20 C 1.37883 * 120.00216 * 179.97438 * 18 17 15 21 21 N 1.31514 * 119.99565 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00071 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47259 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47121 * 120.00200 * 22 20 18 25 25 H 1.48500 * 109.47080 * 239.99935 * 22 20 18 26 26 H 1.09001 * 109.46902 * 283.03234 * 1 2 3 27 27 H 1.08998 * 109.47084 * 43.02602 * 1 2 3 28 28 H 1.08998 * 109.47302 * 163.02952 * 1 2 3 29 29 H 1.08997 * 109.47026 * 239.99580 * 2 1 3 30 30 H 1.08997 * 109.47027 * 119.99609 * 2 1 3 31 31 H 1.09004 * 110.72451 * 85.78891 * 5 3 2 32 32 H 1.09001 * 110.72430 * 322.50805 * 5 3 2 33 33 H 1.09001 * 109.47017 * 302.78307 * 8 6 5 34 34 H 1.08998 * 109.47187 * 62.78095 * 8 6 5 35 35 H 1.08993 * 109.47623 * 182.78035 * 8 6 5 36 36 H 1.09004 * 109.91803 * 241.87270 * 9 6 5 37 37 H 1.09003 * 110.08795 * 120.67443 * 9 6 5 38 38 H 1.08995 * 109.47217 * 313.26389 * 11 10 9 39 39 H 1.08994 * 109.47331 * 193.25515 * 11 10 9 40 40 H 1.08999 * 109.47653 * 305.75901 * 12 11 10 41 41 H 1.09002 * 109.47502 * 65.76770 * 12 11 10 42 42 H 1.08995 * 109.47137 * 89.99954 * 16 15 13 43 43 H 1.08996 * 109.46618 * 210.00559 * 16 15 13 44 44 H 1.09004 * 109.47199 * 330.00079 * 16 15 13 45 45 H 1.09003 * 109.46902 * 209.99598 * 17 15 13 46 46 H 1.08992 * 109.47657 * 329.99622 * 17 15 13 47 47 H 0.96997 * 119.99808 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6748 1.9807 -0.8747 5 6 3.5880 1.4752 0.0551 6 6 3.8830 2.8648 0.6650 7 1 4.1014 3.5853 -0.1232 8 6 5.0551 2.7793 1.6446 9 6 2.5933 3.2599 1.4079 10 7 1.6407 2.1398 1.2492 11 6 0.2595 2.6321 1.1588 12 6 0.0390 3.2843 -0.2076 13 6 -1.3297 3.9135 -0.2488 14 8 -2.0574 3.8465 0.7191 15 7 -1.7457 4.5499 -1.3617 16 6 -0.8669 4.6304 -2.5312 17 6 -3.0764 5.1611 -1.4020 18 6 -2.9888 6.5873 -0.9233 19 1 -2.0371 6.9974 -0.6192 20 6 -4.1237 7.3689 -0.8737 21 7 -5.2825 6.8697 -1.2446 22 14 -4.0152 9.1365 -0.2798 23 1 -2.6089 9.4534 0.0771 24 1 -4.4706 10.0500 -1.3584 25 1 -4.8799 9.3113 0.9148 26 1 -0.3633 0.2317 1.0012 27 1 -0.3633 0.7513 -0.7012 28 1 -0.3634 -0.9829 -0.2999 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.0115 1.3956 -0.9461 32 1 3.9679 0.6825 0.6998 33 1 4.8278 2.0478 2.4201 34 1 5.9543 2.4739 1.1095 35 1 5.2183 3.7550 2.1021 36 1 2.1760 4.1670 0.9708 37 1 2.8046 3.4207 2.4651 38 1 0.0835 3.3666 1.9446 39 1 -0.4320 1.7983 1.2793 40 1 0.7964 4.0510 -0.3708 41 1 0.1144 2.5271 -0.9881 42 1 -1.0424 3.7703 -3.1774 43 1 -1.0776 5.5474 -3.0814 44 1 0.1731 4.6334 -2.2047 45 1 -3.4535 5.1435 -2.4245 46 1 -3.7528 4.6018 -0.7557 47 1 -6.0808 7.4195 -1.2100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357015879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:21 Heat of formation + Delta-G solvation = -38.044520 kcal Electronic energy + Delta-G solvation = -23505.386297 eV Core-core repulsion = 20301.902447 eV Total energy + Delta-G solvation = -3203.483849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16856 -38.64254 -34.91825 -34.50330 -33.15806 -32.58649 -30.16509 -28.82558 -27.60122 -26.03139 -25.52477 -24.19576 -22.83433 -21.95000 -20.42269 -19.55499 -18.26021 -17.06728 -16.53457 -15.96839 -15.37724 -15.19083 -14.98972 -14.57390 -14.32007 -13.71894 -13.55559 -13.46658 -13.22122 -12.80274 -12.62889 -12.54740 -12.26265 -12.17446 -11.98100 -11.88491 -11.78777 -11.44242 -11.32008 -11.19656 -11.11383 -10.87129 -10.85035 -10.60270 -10.58958 -10.46368 -10.16654 -10.09931 -9.61455 -8.88364 -8.44780 -8.33328 -7.63962 -6.04918 -4.09671 3.28947 3.36069 3.39128 3.45337 3.87288 4.07122 4.40826 4.45012 4.54384 4.69208 4.97162 5.11069 5.14487 5.17713 5.18799 5.22755 5.29605 5.36142 5.39331 5.42196 5.51186 5.56468 5.63741 5.71021 5.75063 5.81292 5.87835 5.90704 5.92326 5.95999 5.99230 6.00986 6.14118 6.18045 6.19716 6.30061 6.53510 6.95961 7.02883 7.09994 7.44417 7.54320 7.91609 8.23181 8.42336 8.90047 9.10469 9.55555 11.03221 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022472 B = 0.003968 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.703729 B = 7055.128165 C = 7650.955395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.104 4.104 3 C 0.051 3.949 4 H 0.064 0.936 5 C -0.115 4.115 6 C -0.104 4.104 7 H 0.072 0.928 8 C -0.140 4.140 9 C 0.034 3.966 10 N -0.506 5.506 11 C 0.051 3.949 12 C -0.177 4.177 13 C 0.506 3.494 14 O -0.541 6.541 15 N -0.604 5.604 16 C 0.085 3.915 17 C 0.244 3.756 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.282 1.282 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.031 0.969 46 H 0.044 0.956 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.080 -11.575 -0.260 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.142 4.142 3 C -0.057 4.057 4 H 0.082 0.918 5 C -0.153 4.153 6 C -0.123 4.123 7 H 0.090 0.910 8 C -0.197 4.197 9 C -0.094 4.094 10 N -0.229 5.229 11 C -0.077 4.077 12 C -0.219 4.219 13 C 0.292 3.708 14 O -0.419 6.419 15 N -0.336 5.336 16 C -0.059 4.059 17 C 0.125 3.875 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.208 1.208 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.498 -11.903 0.682 22.007 hybrid contribution -0.087 1.798 -0.606 1.899 sum 18.411 -10.105 0.077 21.002 Atomic orbital electron populations 1.22053 0.95711 1.01284 1.02670 1.21395 0.96122 0.94948 1.01757 1.23033 0.94521 0.95608 0.92547 0.91840 1.22620 0.95005 0.97018 1.00637 1.21980 0.95209 0.97300 0.97822 0.90970 1.21806 0.97156 1.01832 0.98940 1.22999 0.91958 0.93441 1.01048 1.64993 1.02103 1.22246 1.33593 1.22378 0.89616 1.00498 0.95202 1.22439 0.96860 1.01072 1.01513 1.20237 0.88126 0.79213 0.83192 1.90667 1.56621 1.60129 1.34499 1.48180 1.18793 1.53945 1.12701 1.21608 0.93494 1.01805 0.89031 1.19281 0.77578 0.92908 0.97709 1.21469 0.94463 0.96536 1.43969 0.92521 1.24943 0.95138 0.98785 0.95280 1.69944 0.98841 1.36671 1.47915 0.86442 0.78138 0.84353 0.78491 1.19853 1.20942 1.20820 0.91454 0.92680 0.93152 0.92013 0.91329 0.91411 0.90688 0.92230 0.92868 0.92728 0.93464 0.90285 0.90038 0.88638 0.89862 0.89098 0.93845 0.90803 0.92742 0.95103 0.93828 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.41 37.16 0.31 -1.44 16 2 C -0.10 -1.01 5.70 -26.73 -0.15 -1.16 16 3 C 0.05 0.52 2.21 -65.79 -0.15 0.38 16 4 H 0.06 0.68 5.33 -51.93 -0.28 0.40 16 5 C -0.11 -1.00 6.05 -24.87 -0.15 -1.15 16 6 C -0.10 -0.93 3.58 -89.27 -0.32 -1.25 16 7 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 8 C -0.14 -1.09 8.90 37.16 0.33 -0.76 16 9 C 0.03 0.37 6.07 -2.76 -0.02 0.36 16 10 N -0.51 -6.11 5.21 -222.63 -1.16 -7.27 16 11 C 0.05 0.74 4.05 -3.82 -0.02 0.73 16 12 C -0.18 -2.64 2.84 -27.88 -0.08 -2.72 16 13 C 0.51 10.57 7.67 -10.98 -0.08 10.49 16 14 O -0.54 -13.67 15.48 5.56 0.09 -13.58 16 15 N -0.60 -12.98 2.86 -182.96 -0.52 -13.50 16 16 C 0.08 1.36 10.24 59.85 0.61 1.98 16 17 C 0.24 6.50 5.16 -5.20 -0.03 6.47 16 18 C -0.53 -15.12 9.39 -34.44 -0.32 -15.45 16 19 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 22 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.07 0.82 6.01 -51.93 -0.31 0.51 16 27 H 0.05 0.65 5.87 -51.93 -0.30 0.35 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.64 7.77 -51.93 -0.40 0.24 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.57 6.37 -51.93 -0.33 0.24 16 37 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 38 H 0.08 1.35 7.82 -51.93 -0.41 0.94 16 39 H 0.10 1.45 4.95 -51.93 -0.26 1.19 16 40 H 0.08 1.16 5.91 -51.93 -0.31 0.86 16 41 H 0.09 1.19 4.57 -51.93 -0.24 0.95 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.05 0.72 6.44 -51.93 -0.33 0.39 16 45 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 46 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -32.41 355.10 -8.83 -41.24 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.14 Total: -1.29 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.15 Total: -1.88 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.95 Total: -46.89 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.41 -8.83 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357015879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.197 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds