Wall clock time and date at job start Tue Mar 31 2020 05:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47357 * 2 1 4 4 H 1.08997 * 110.37071 * 303.31878 * 3 2 1 5 5 C 1.54385 * 110.40973 * 65.67117 * 3 2 1 6 6 C 1.54258 * 105.06243 * 142.75162 * 5 3 2 7 7 H 1.09005 * 110.32207 * 241.10748 * 6 5 3 8 8 C 1.52997 * 110.32903 * 118.89167 * 6 5 3 9 9 C 1.54385 * 105.05988 * 359.97438 * 6 5 3 10 10 N 1.48560 * 110.51114 * 180.89851 * 3 2 1 11 11 C 1.46901 * 111.00006 * 82.13194 * 10 3 2 12 12 C 1.52997 * 109.47132 * 175.70874 * 11 10 3 13 13 C 1.50703 * 109.47137 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99624 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99945 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00047 * 359.97438 * 15 13 12 17 17 C 1.46498 * 119.99751 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.46852 * 89.99959 * 17 15 13 19 19 H 1.08003 * 120.00294 * 0.02562 * 18 17 15 20 20 C 1.37882 * 119.99915 * 179.97438 * 18 17 15 21 21 N 1.31508 * 120.00138 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99893 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46999 * 90.00154 * 22 20 18 24 24 H 1.48502 * 109.46890 * 210.00324 * 22 20 18 25 25 H 1.48496 * 109.47058 * 329.99893 * 22 20 18 26 26 H 1.08997 * 109.47477 * 184.70795 * 1 2 3 27 27 H 1.08998 * 109.47131 * 304.71760 * 1 2 3 28 28 H 1.09006 * 109.46766 * 64.71413 * 1 2 3 29 29 H 1.09001 * 109.47098 * 239.99714 * 2 1 3 30 30 H 1.09003 * 109.46830 * 120.00206 * 2 1 3 31 31 H 1.09005 * 110.31982 * 261.63852 * 5 3 2 32 32 H 1.08993 * 110.32718 * 23.85107 * 5 3 2 33 33 H 1.09000 * 109.46819 * 59.99808 * 8 6 5 34 34 H 1.09002 * 109.46965 * 179.97438 * 8 6 5 35 35 H 1.09003 * 109.46920 * 300.00209 * 8 6 5 36 36 H 1.09002 * 110.41457 * 217.37312 * 9 6 5 37 37 H 1.09001 * 110.41212 * 94.92728 * 9 6 5 38 38 H 1.08996 * 109.46890 * 295.70854 * 11 10 3 39 39 H 1.09003 * 109.47102 * 55.71042 * 11 10 3 40 40 H 1.09008 * 109.47316 * 300.00103 * 12 11 10 41 41 H 1.08994 * 109.47515 * 59.99865 * 12 11 10 42 42 H 1.09001 * 109.46791 * 90.00402 * 16 15 13 43 43 H 1.08998 * 109.46867 * 210.00026 * 16 15 13 44 44 H 1.08993 * 109.47371 * 330.00205 * 16 15 13 45 45 H 1.08997 * 109.47290 * 209.99621 * 17 15 13 46 46 H 1.09003 * 109.47717 * 330.00343 * 17 15 13 47 47 H 0.97006 * 120.00299 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6374 1.9872 -0.8538 5 6 1.6576 2.1487 1.3184 6 6 2.8639 3.0492 1.6554 7 1 3.2986 2.7575 2.6115 8 6 2.4373 4.5181 1.6903 9 6 3.8741 2.8107 0.5126 10 7 3.5253 1.4694 -0.0218 11 6 4.0349 1.2983 -1.3889 12 6 5.5585 1.4382 -1.3865 13 6 6.0812 1.2633 -2.7891 14 8 5.3110 1.0476 -3.7008 15 7 7.4047 1.3456 -3.0302 16 6 8.3350 1.6057 -1.9288 17 6 7.9128 1.1751 -4.3936 18 6 7.9596 2.5142 -5.0833 19 1 7.6429 3.4034 -4.5585 20 6 8.4077 2.6043 -6.3842 21 7 8.7938 1.5217 -7.0232 22 14 8.4664 4.2643 -7.2389 23 1 9.7889 4.8966 -7.0019 24 1 8.2614 4.0773 -8.6978 25 1 7.3954 5.1384 -6.6967 26 1 -0.3634 -1.0241 0.0843 27 1 -0.3633 0.5853 0.8447 28 1 -0.3633 0.4390 -0.9293 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.7615 2.7533 1.1778 32 1 1.5001 1.4152 2.1091 33 1 1.6680 4.6550 2.4502 34 1 3.2991 5.1411 1.9298 35 1 2.0409 4.8045 0.7162 36 1 4.8932 2.8130 0.8994 37 1 3.7586 3.5695 -0.2614 38 1 3.7613 0.3097 -1.7576 39 1 3.6011 2.0604 -2.0364 40 1 5.8320 2.4268 -1.0178 41 1 5.9923 0.6762 -0.7391 42 1 8.6580 0.6593 -1.4950 43 1 9.2025 2.1472 -2.3062 44 1 7.8369 2.2039 -1.1660 45 1 8.9158 0.7501 -4.3570 46 1 7.2541 0.5049 -4.9458 47 1 9.1087 1.5850 -7.9385 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357015880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:24 Heat of formation + Delta-G solvation = -51.379926 kcal Electronic energy + Delta-G solvation = -22878.479648 eV Core-core repulsion = 19674.417532 eV Total energy + Delta-G solvation = -3204.062116 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.79017 -38.73776 -34.85676 -34.04779 -33.95712 -32.58715 -30.27942 -28.24009 -27.53421 -26.39632 -25.64533 -23.99129 -22.87166 -21.64676 -20.39894 -19.82840 -18.19986 -16.58481 -16.47931 -15.99892 -15.42920 -15.18723 -15.15079 -14.52099 -14.28516 -14.12318 -13.77681 -13.36332 -13.21290 -12.84124 -12.71820 -12.41723 -12.16643 -12.14737 -12.03822 -11.83732 -11.75772 -11.45630 -11.31622 -11.17087 -10.97339 -10.92572 -10.86661 -10.67791 -10.59150 -10.51557 -10.44595 -10.14757 -9.61285 -8.85543 -8.49375 -8.42778 -7.60920 -6.03274 -4.08045 3.30075 3.36483 3.40154 3.49489 3.73263 4.15819 4.41354 4.45423 4.51872 4.78423 4.89640 5.06138 5.15802 5.18320 5.26198 5.27844 5.30137 5.36055 5.37907 5.44213 5.48069 5.55600 5.60923 5.64727 5.70576 5.83016 5.85318 5.88273 5.90733 5.93925 5.97486 6.07019 6.10510 6.17841 6.21541 6.23972 6.25514 6.85980 7.04326 7.09060 7.46667 7.57081 7.93302 8.25102 8.45642 8.91678 9.13272 9.57001 11.04783 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.003455 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.477074 B = 8101.794178 C = 8371.782895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C 0.063 3.937 4 H 0.052 0.948 5 C -0.114 4.114 6 C -0.098 4.098 7 H 0.078 0.922 8 C -0.145 4.145 9 C 0.033 3.967 10 N -0.509 5.509 11 C 0.063 3.937 12 C -0.135 4.135 13 C 0.504 3.496 14 O -0.545 6.545 15 N -0.604 5.604 16 C 0.085 3.915 17 C 0.245 3.755 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.739 1.149 19.783 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.046 4.046 4 H 0.070 0.930 5 C -0.152 4.152 6 C -0.117 4.117 7 H 0.096 0.904 8 C -0.203 4.203 9 C -0.095 4.095 10 N -0.233 5.233 11 C -0.066 4.066 12 C -0.175 4.175 13 C 0.290 3.710 14 O -0.424 6.424 15 N -0.336 5.336 16 C -0.060 4.060 17 C 0.125 3.875 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.803 0.529 19.407 22.721 hybrid contribution -0.017 1.626 -1.100 1.963 sum -11.820 2.154 18.307 21.898 Atomic orbital electron populations 1.21772 0.95820 1.01601 1.01714 1.21443 0.95064 0.95465 1.02780 1.22670 0.88223 0.96512 0.97171 0.93031 1.22453 0.97450 0.98242 0.97056 1.21883 0.95638 0.95101 0.99050 0.90372 1.21872 1.01202 0.95427 1.01750 1.23219 0.99566 0.90340 0.96385 1.65349 1.08576 1.28242 1.21121 1.21976 0.93823 1.02732 0.88041 1.21641 0.96287 1.03538 0.96076 1.20310 0.82731 0.77837 0.90083 1.90661 1.55866 1.49336 1.46497 1.48157 1.05483 1.69319 1.10624 1.21625 0.94624 0.99892 0.89830 1.19276 0.94634 0.97498 0.76054 1.21441 1.43263 0.93673 0.98098 0.92550 1.24943 0.95260 0.96871 0.97082 1.69933 1.43750 1.27719 1.11995 0.86499 0.78243 0.83906 0.78790 1.20625 1.21051 1.19942 0.92661 0.92705 0.92881 0.91749 0.91271 0.91472 0.91025 0.92589 0.92514 0.92692 0.90086 0.93576 0.89840 0.93863 0.89770 0.88922 0.93733 0.90883 0.92482 0.95053 0.93863 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.82 37.16 0.36 -0.90 16 2 C -0.11 -1.11 5.57 -26.73 -0.15 -1.26 16 3 C 0.06 0.68 2.33 -66.07 -0.15 0.53 16 4 H 0.05 0.62 7.91 -51.93 -0.41 0.21 16 5 C -0.11 -1.01 5.21 -25.35 -0.13 -1.14 16 6 C -0.10 -0.87 3.65 -89.24 -0.33 -1.20 16 7 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 8 C -0.14 -1.13 8.92 37.16 0.33 -0.80 16 9 C 0.03 0.36 4.90 -2.19 -0.01 0.35 16 10 N -0.51 -6.25 5.13 -222.15 -1.14 -7.39 16 11 C 0.06 0.93 4.09 -3.82 -0.02 0.92 16 12 C -0.13 -2.07 4.11 -27.88 -0.11 -2.18 16 13 C 0.50 10.71 7.67 -10.98 -0.08 10.62 16 14 O -0.55 -13.99 15.56 5.56 0.09 -13.90 16 15 N -0.60 -13.12 2.86 -182.96 -0.52 -13.65 16 16 C 0.08 1.36 10.24 59.85 0.61 1.98 16 17 C 0.24 6.55 5.16 -5.19 -0.03 6.53 16 18 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 19 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 22 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.41 7.31 -51.93 -0.38 0.03 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.73 7.47 -51.93 -0.39 0.34 16 30 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.07 0.54 7.71 -51.93 -0.40 0.14 16 32 H 0.07 0.60 7.81 -51.93 -0.41 0.20 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 36 H 0.08 0.84 7.67 -51.93 -0.40 0.44 16 37 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 38 H 0.08 1.33 7.44 -51.93 -0.39 0.95 16 39 H 0.04 0.72 7.93 -51.93 -0.41 0.31 16 40 H 0.08 1.17 6.21 -51.92 -0.32 0.84 16 41 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 44 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 45 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 46 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -32.79 368.58 -9.23 -42.02 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -8.80 Total: -3.06 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -0.12 Total: -0.44 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.93 Total: -47.26 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.79 -9.23 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357015880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.361 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds