Wall clock time and date at job start Tue Mar 31 2020 05:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47046 * 2 1 4 4 H 1.08996 * 109.91219 * 53.66284 * 3 2 1 5 5 C 1.53993 * 109.91986 * 174.77052 * 3 2 1 6 6 C 1.54598 * 105.14198 * 120.76905 * 5 3 2 7 7 C 1.54933 * 102.92101 * 21.95987 * 6 5 3 8 8 H 1.09000 * 110.66690 * 81.18326 * 7 6 5 9 9 C 1.53002 * 110.66971 * 204.15122 * 7 6 5 10 10 N 1.47911 * 110.07773 * 292.45715 * 3 2 1 11 11 C 1.46889 * 110.99974 * 94.71272 * 10 3 2 12 12 C 1.50700 * 109.47369 * 62.23705 * 11 10 3 13 13 O 1.21283 * 120.00106 * 353.10642 * 12 11 10 14 14 N 1.34777 * 120.00192 * 173.10234 * 12 11 10 15 15 C 1.46500 * 120.00161 * 0.02562 * 14 12 11 16 16 C 1.52998 * 109.46818 * 89.99829 * 15 14 12 17 17 C 1.46508 * 119.99698 * 179.97438 * 14 12 11 18 18 C 1.50699 * 109.46881 * 90.00525 * 17 14 12 19 19 H 1.08006 * 120.00181 * 359.97438 * 18 17 14 20 20 C 1.37875 * 120.00047 * 179.97438 * 18 17 14 21 21 N 1.31512 * 119.99895 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00068 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47059 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46710 * 120.00299 * 22 20 18 25 25 H 1.48506 * 109.47127 * 239.99810 * 22 20 18 26 26 H 1.08999 * 109.47002 * 67.10008 * 1 2 3 27 27 H 1.08996 * 109.47123 * 187.09806 * 1 2 3 28 28 H 1.09004 * 109.47742 * 307.10092 * 1 2 3 29 29 H 1.08999 * 109.47344 * 239.99561 * 2 1 3 30 30 H 1.09008 * 109.46597 * 119.99276 * 2 1 3 31 31 H 1.08996 * 110.30922 * 239.69124 * 5 3 2 32 32 H 1.09008 * 110.30632 * 1.85703 * 5 3 2 33 33 H 1.09000 * 110.72069 * 140.31691 * 6 5 3 34 34 H 1.08998 * 110.72339 * 263.60421 * 6 5 3 35 35 H 1.08993 * 109.46921 * 63.57166 * 9 7 6 36 36 H 1.08998 * 109.47307 * 183.57692 * 9 7 6 37 37 H 1.09003 * 109.46763 * 303.57503 * 9 7 6 38 38 H 1.08999 * 109.47417 * 182.23887 * 11 10 3 39 39 H 1.08998 * 109.47310 * 302.23723 * 11 10 3 40 40 H 1.09000 * 109.46936 * 209.99941 * 15 14 12 41 41 H 1.08998 * 109.47131 * 330.00064 * 15 14 12 42 42 H 1.09005 * 109.47174 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.47458 * 299.99792 * 16 15 14 44 44 H 1.08998 * 109.47077 * 60.00203 * 16 15 14 45 45 H 1.09002 * 109.46918 * 209.99710 * 17 14 12 46 46 H 1.08995 * 109.47173 * 330.00339 * 17 14 12 47 47 H 0.97005 * 120.00431 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5912 1.9949 0.8255 5 6 3.5742 1.4566 0.1320 6 6 4.0817 2.1844 -1.1341 7 6 2.8464 3.0064 -1.5798 8 1 2.7676 3.9268 -1.0013 9 6 2.9150 3.3157 -3.0767 10 7 1.7089 2.0981 -1.2839 11 6 0.4494 2.8473 -1.1830 12 6 0.5967 3.9418 -0.1576 13 8 1.6006 4.0071 0.5198 14 7 -0.3871 4.8483 0.0066 15 6 -1.5999 4.7693 -0.8113 16 6 -2.6366 3.8949 -0.1030 17 6 -0.2440 5.9120 1.0038 18 6 0.4109 7.1113 0.3685 19 1 0.6928 7.0839 -0.6738 20 6 0.6502 8.2437 1.1177 21 7 0.3074 8.2770 2.3870 22 14 1.4626 9.7302 0.3304 23 1 1.7483 9.4398 -1.0976 24 1 0.5523 10.8997 0.4247 25 1 2.7326 10.0331 1.0381 26 1 -0.3633 0.3999 -0.9467 27 1 -0.3633 -1.0198 0.1270 28 1 -0.3635 0.6199 0.8196 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8719 2.0025 1.0272 32 1 3.9605 0.4378 0.1631 33 1 4.9161 2.8426 -0.8921 34 1 4.3657 1.4667 -1.9037 35 1 2.8755 2.3848 -3.6422 36 1 2.0715 3.9468 -3.3563 37 1 3.8470 3.8359 -3.2978 38 1 0.2093 3.2864 -2.1512 39 1 -0.3516 2.1724 -0.8815 40 1 -2.0065 5.7702 -0.9558 41 1 -1.3571 4.3324 -1.7800 42 1 -3.5392 3.8365 -0.7114 43 1 -2.2300 2.8940 0.0414 44 1 -2.8794 4.3318 0.8656 45 1 -1.2280 6.1921 1.3800 46 1 0.3726 5.5558 1.8290 47 1 0.4754 9.0738 2.9141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357553943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:22 Heat of formation + Delta-G solvation = -37.256603 kcal Electronic energy + Delta-G solvation = -24438.228825 eV Core-core repulsion = 21234.779143 eV Total energy + Delta-G solvation = -3203.449683 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26685 -37.91939 -35.25437 -33.63962 -32.91376 -31.97310 -30.10842 -29.89123 -27.69388 -25.97332 -25.07079 -23.04986 -22.57442 -21.89525 -20.29016 -19.90957 -18.20118 -16.67781 -16.39005 -15.86036 -15.19079 -15.13037 -14.72908 -14.47884 -14.01264 -13.38477 -13.32560 -13.21609 -13.15609 -13.09616 -12.45501 -12.20366 -12.12297 -11.92924 -11.88632 -11.68585 -11.39741 -11.20735 -11.16754 -10.97983 -10.89555 -10.69326 -10.57956 -10.45932 -10.35759 -10.21127 -10.15791 -9.98486 -9.59869 -9.49287 -8.45836 -7.78028 -7.64816 -6.06306 -4.10982 3.27611 3.33746 3.36482 3.41140 3.96978 4.19723 4.43107 4.85151 4.97822 5.10217 5.22167 5.28444 5.29231 5.32870 5.39329 5.46047 5.53945 5.64262 5.72280 5.75189 5.78908 5.80803 5.84484 5.96312 5.98707 6.04002 6.09128 6.11782 6.15110 6.22262 6.26910 6.33338 6.40579 6.40732 6.47428 6.63508 6.66313 7.03353 7.22642 7.30786 7.43472 7.54042 7.90132 8.22049 8.41644 8.88084 9.06592 9.54342 11.01725 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.005808 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.602825 B = 4819.646168 C = 5593.749350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C 0.061 3.939 4 H 0.076 0.924 5 C -0.118 4.118 6 C -0.112 4.112 7 C 0.041 3.959 8 H 0.093 0.907 9 C -0.134 4.134 10 N -0.487 5.487 11 C 0.016 3.984 12 C 0.475 3.525 13 O -0.538 6.538 14 N -0.595 5.595 15 C 0.105 3.895 16 C -0.168 4.168 17 C 0.245 3.755 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.030 0.970 46 H 0.041 0.959 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.737 -14.330 -8.077 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.048 4.048 4 H 0.094 0.906 5 C -0.156 4.156 6 C -0.150 4.150 7 C -0.066 4.066 8 H 0.111 0.889 9 C -0.192 4.192 10 N -0.210 5.210 11 C -0.116 4.116 12 C 0.261 3.739 13 O -0.417 6.417 14 N -0.326 5.326 15 C -0.019 4.019 16 C -0.227 4.227 17 C 0.126 3.874 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.294 -14.551 -7.969 16.592 hybrid contribution 0.308 1.654 0.293 1.708 sum 0.014 -12.897 -7.676 15.008 Atomic orbital electron populations 1.21870 0.96458 1.00881 1.01817 1.21553 0.95644 0.96072 1.01280 1.22494 0.95484 0.94461 0.92330 0.90607 1.22304 0.94819 0.99963 0.98521 1.22397 0.97127 0.98401 0.97076 1.23131 0.89801 0.97321 0.96390 0.88921 1.21679 1.01121 1.01046 0.95343 1.65012 1.01286 1.25431 1.29249 1.22611 0.95315 0.94752 0.98911 1.21497 0.83696 0.83540 0.85124 1.90612 1.28677 1.74751 1.47639 1.48410 1.16410 1.29268 1.38558 1.21425 0.85982 1.01055 0.93459 1.22210 0.98829 0.99908 1.01719 1.19248 0.97313 0.83751 0.87096 1.21447 1.39713 0.98089 0.96964 0.92548 1.24933 0.95648 0.98742 0.94783 1.69942 1.47650 1.29088 1.06721 0.86466 0.79219 0.82421 0.79464 1.19819 1.20954 1.20886 0.92061 0.93318 0.93189 0.91686 0.92335 0.91463 0.91945 0.91656 0.91687 0.92409 0.93209 0.92616 0.88761 0.88001 0.90022 0.91678 0.92112 0.93099 0.92117 0.95222 0.94060 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.65 37.16 0.32 -1.43 16 2 C -0.11 -1.32 5.39 -26.73 -0.14 -1.46 16 3 C 0.06 0.91 1.88 -66.64 -0.13 0.79 16 4 H 0.08 1.39 5.65 -51.93 -0.29 1.10 16 5 C -0.12 -1.69 6.57 -25.37 -0.17 -1.86 16 6 C -0.11 -1.58 6.50 -24.87 -0.16 -1.75 16 7 C 0.04 0.66 2.50 -65.78 -0.16 0.49 16 8 H 0.09 1.89 5.20 -51.93 -0.27 1.62 16 9 C -0.13 -1.84 9.43 37.16 0.35 -1.49 16 10 N -0.49 -7.36 4.76 -216.22 -1.03 -8.39 16 11 C 0.02 0.25 4.31 -4.98 -0.02 0.23 16 12 C 0.48 9.54 6.56 -10.99 -0.07 9.46 16 13 O -0.54 -12.71 11.37 5.55 0.06 -12.65 16 14 N -0.59 -12.31 2.46 -175.06 -0.43 -12.74 16 15 C 0.11 1.66 5.96 -4.04 -0.02 1.64 16 16 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 17 C 0.25 6.36 5.16 -5.19 -0.03 6.33 16 18 C -0.52 -14.75 9.39 -34.44 -0.32 -15.08 16 19 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 22 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H 0.06 0.70 6.36 -51.93 -0.33 0.37 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.76 7.69 -51.92 -0.40 0.36 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.70 7.83 -51.93 -0.41 0.29 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.34 6.65 -51.93 -0.35 0.99 16 39 H 0.10 1.39 4.59 -51.93 -0.24 1.15 16 40 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.06 0.87 6.25 -51.93 -0.32 0.54 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.03 0.78 8.07 -51.93 -0.42 0.37 16 46 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -31.13 357.53 -8.98 -40.11 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.41 Total: 1.63 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.28 Total: -4.34 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.72 Total: -47.01 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.06 Total: -12.65 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.13 -8.98 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357553943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.854 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds