Wall clock time and date at job start Tue Mar 31 2020 05:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46938 * 2 1 4 4 H 1.09000 * 110.72298 * 302.90095 * 3 2 1 5 5 C 1.54942 * 110.66750 * 179.81064 * 3 2 1 6 6 C 1.54592 * 102.91827 * 204.15217 * 5 3 2 7 7 C 1.53989 * 105.14279 * 21.95372 * 6 5 3 8 8 H 1.09003 * 109.91636 * 241.87283 * 7 6 5 9 9 C 1.52997 * 110.08307 * 120.67109 * 7 6 5 10 10 N 1.47906 * 107.05875 * 1.22603 * 7 6 5 11 11 C 1.46898 * 111.00053 * 214.15527 * 10 7 6 12 12 C 1.50696 * 109.47204 * 62.16503 * 11 10 7 13 13 O 1.21280 * 120.00088 * 352.99113 * 12 11 10 14 14 N 1.34777 * 120.00434 * 172.99047 * 12 11 10 15 15 C 1.46504 * 119.99638 * 359.97438 * 14 12 11 16 16 C 1.53000 * 109.46996 * 90.00049 * 15 14 12 17 17 C 1.46497 * 120.00369 * 180.02562 * 14 12 11 18 18 C 1.50696 * 109.47421 * 89.99955 * 17 14 12 19 19 H 1.07998 * 120.00135 * 359.97438 * 18 17 14 20 20 C 1.37878 * 120.00016 * 180.02562 * 18 17 14 21 21 N 1.31517 * 120.00075 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00046 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47152 * 60.00254 * 22 20 18 24 24 H 1.48503 * 109.47339 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47569 * 300.00231 * 22 20 18 26 26 H 1.09001 * 109.46760 * 160.00117 * 1 2 3 27 27 H 1.09004 * 109.47385 * 279.99532 * 1 2 3 28 28 H 1.08996 * 109.47642 * 39.99940 * 1 2 3 29 29 H 1.08998 * 109.47070 * 240.00253 * 2 1 3 30 30 H 1.08996 * 109.47454 * 120.00077 * 2 1 3 31 31 H 1.08997 * 110.72383 * 85.78653 * 5 3 2 32 32 H 1.09003 * 110.87302 * 322.57809 * 5 3 2 33 33 H 1.09011 * 110.30677 * 263.03891 * 6 5 3 34 34 H 1.09000 * 110.31181 * 140.87537 * 6 5 3 35 35 H 1.08995 * 109.46863 * 302.31281 * 9 7 6 36 36 H 1.09001 * 109.47158 * 62.31235 * 9 7 6 37 37 H 1.08996 * 109.47535 * 182.30942 * 9 7 6 38 38 H 1.08992 * 109.47089 * 182.16537 * 11 10 7 39 39 H 1.09008 * 109.47325 * 302.16924 * 11 10 7 40 40 H 1.08999 * 109.47100 * 209.99966 * 15 14 12 41 41 H 1.08995 * 109.47067 * 330.00144 * 15 14 12 42 42 H 1.09000 * 109.46849 * 179.97438 * 16 15 14 43 43 H 1.08991 * 109.47395 * 300.00130 * 16 15 14 44 44 H 1.09003 * 109.47107 * 60.00448 * 16 15 14 45 45 H 1.09010 * 109.46910 * 209.99858 * 17 14 12 46 46 H 1.09000 * 109.46772 * 329.99234 * 17 14 12 47 47 H 0.96998 * 120.00389 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6464 1.9908 -0.8560 5 6 3.5890 1.4750 0.0048 6 6 3.9039 2.8574 0.6208 7 6 2.6393 3.2436 1.4100 8 1 2.2081 4.1557 0.9973 9 6 2.9843 3.4521 2.8859 10 7 1.6817 2.1252 1.2695 11 6 0.2985 2.6181 1.2301 12 6 0.1159 3.5065 0.0266 13 8 1.0733 3.8120 -0.6524 14 7 -1.1112 3.9616 -0.2953 15 6 -2.2677 3.5921 0.5247 16 6 -2.4558 4.6262 1.6365 17 6 -1.2887 4.8248 -1.4655 18 6 -1.5613 3.9750 -2.6798 19 1 -1.5981 2.8995 -2.5891 20 6 -1.7625 4.5705 -3.9070 21 7 -1.7172 5.8803 -4.0177 22 14 -2.0997 3.5172 -5.4123 23 1 -3.3341 2.7212 -5.1931 24 1 -2.2786 4.3921 -6.5988 25 1 -0.9540 2.6007 -5.6419 26 1 -0.3633 -0.9657 -0.3515 27 1 -0.3634 0.1784 1.0121 28 1 -0.3634 0.7872 -0.6605 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9794 1.4070 -1.0106 32 1 3.9923 0.6751 0.6258 33 1 4.0964 3.5871 -0.1659 34 1 4.7610 2.7870 1.2904 35 1 3.4327 2.5428 3.2861 36 1 3.6899 4.2774 2.9810 37 1 2.0762 3.6846 3.4421 38 1 -0.3867 1.7730 1.1651 39 1 0.0894 3.1867 2.1364 40 1 -3.1609 3.5629 -0.0993 41 1 -2.1008 2.6099 0.9665 42 1 -3.3166 4.3516 2.2462 43 1 -1.5626 4.6555 2.2604 44 1 -2.6227 5.6086 1.1946 45 1 -2.1297 5.4975 -1.2966 46 1 -0.3828 5.4091 -1.6268 47 1 -1.8591 6.2993 -4.8809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357553945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:25 Heat of formation + Delta-G solvation = -32.891454 kcal Electronic energy + Delta-G solvation = -24577.238703 eV Core-core repulsion = 21373.978308 eV Total energy + Delta-G solvation = -3203.260396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.30420 -37.88936 -35.24755 -33.71193 -32.90060 -31.94604 -30.10554 -29.82689 -27.72594 -26.08192 -24.91868 -23.04144 -22.59391 -21.90662 -20.31045 -19.82374 -18.19219 -16.74661 -16.39979 -15.86783 -15.42172 -14.89532 -14.65351 -14.42612 -14.12164 -13.51888 -13.35000 -13.18355 -12.92186 -12.81080 -12.52420 -12.39397 -12.05482 -11.87759 -11.82855 -11.71435 -11.53975 -11.26388 -11.17443 -10.96270 -10.79764 -10.71134 -10.54959 -10.40736 -10.25109 -10.17397 -10.13083 -9.97899 -9.60763 -9.49919 -8.44826 -7.77118 -7.64684 -6.05755 -4.10578 3.29777 3.33996 3.34693 3.40517 3.97349 4.20387 4.43306 4.86485 4.98350 5.11261 5.23491 5.28747 5.33352 5.38113 5.39818 5.48618 5.55813 5.63991 5.72735 5.74336 5.76591 5.79724 5.82552 5.96253 6.04112 6.04848 6.15108 6.19271 6.19940 6.22429 6.28102 6.30710 6.41507 6.44695 6.47500 6.63443 6.68805 7.03764 7.23397 7.31542 7.43745 7.54226 7.90415 8.22338 8.42060 8.88048 9.07025 9.54554 11.02215 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.005995 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.042557 B = 4669.626706 C = 5162.719973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.106 4.106 3 C 0.046 3.954 4 H 0.094 0.906 5 C -0.113 4.113 6 C -0.117 4.117 7 C 0.055 3.945 8 H 0.075 0.925 9 C -0.133 4.133 10 N -0.487 5.487 11 C 0.008 3.992 12 C 0.476 3.524 13 O -0.538 6.538 14 N -0.595 5.595 15 C 0.105 3.895 16 C -0.168 4.168 17 C 0.246 3.754 18 C -0.524 4.524 19 H 0.055 0.945 20 C 0.062 3.938 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.060 0.940 45 H 0.030 0.970 46 H 0.041 0.959 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -7.976 13.154 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.144 4.144 3 C -0.062 4.062 4 H 0.112 0.888 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.053 4.053 8 H 0.093 0.907 9 C -0.191 4.191 10 N -0.210 5.210 11 C -0.124 4.124 12 C 0.262 3.738 13 O -0.417 6.417 14 N -0.326 5.326 15 C -0.019 4.019 16 C -0.227 4.227 17 C 0.127 3.873 18 C -0.563 4.563 19 H 0.074 0.926 20 C -0.140 4.140 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.797 -8.000 13.102 16.083 hybrid contribution -0.518 0.141 -1.579 1.668 sum 4.278 -7.859 11.523 14.589 Atomic orbital electron populations 1.21998 0.96336 1.01587 1.01486 1.21429 0.95745 0.95840 1.01401 1.23219 0.94906 0.94618 0.93410 0.88816 1.22397 0.95368 0.97014 1.00343 1.22298 0.96873 0.97213 0.99091 1.22441 0.92758 0.94972 0.95137 0.90713 1.21770 1.00681 1.00881 0.95741 1.64998 1.00435 1.22348 1.33236 1.22802 0.93442 0.99301 0.96821 1.21484 0.83519 0.81781 0.86980 1.90611 1.39058 1.58576 1.53475 1.48407 1.05885 1.49576 1.28767 1.21422 0.90754 0.96929 0.92797 1.22207 1.01124 1.00716 0.98624 1.19235 0.97788 0.89330 0.80980 1.21367 1.48737 0.93334 0.92882 0.92640 1.24926 0.95309 0.94979 0.98828 1.69920 1.49708 1.08665 1.25100 0.86590 0.78758 0.80180 0.82087 1.20237 1.21171 1.20219 0.93186 0.92283 0.92337 0.92065 0.91771 0.91658 0.91684 0.91496 0.91950 0.92544 0.92943 0.93232 0.87216 0.89003 0.90011 0.91733 0.92122 0.93098 0.92117 0.95247 0.94089 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.35 37.16 0.31 -1.83 16 2 C -0.11 -1.45 5.69 -26.73 -0.15 -1.60 16 3 C 0.05 0.74 2.06 -65.79 -0.14 0.60 16 4 H 0.09 1.91 5.16 -51.93 -0.27 1.64 16 5 C -0.11 -1.61 6.50 -24.87 -0.16 -1.77 16 6 C -0.12 -1.69 6.57 -25.38 -0.17 -1.85 16 7 C 0.06 0.84 2.37 -66.64 -0.16 0.69 16 8 H 0.07 1.38 5.65 -51.93 -0.29 1.09 16 9 C -0.13 -1.65 9.33 37.16 0.35 -1.31 16 10 N -0.49 -7.42 4.85 -216.22 -1.05 -8.47 16 11 C 0.01 0.12 4.13 -4.98 -0.02 0.10 16 12 C 0.48 9.53 6.34 -10.99 -0.07 9.46 16 13 O -0.54 -12.73 11.37 5.56 0.06 -12.67 16 14 N -0.59 -12.25 2.46 -175.06 -0.43 -12.68 16 15 C 0.11 1.66 5.96 -4.04 -0.02 1.64 16 16 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 17 C 0.25 6.36 5.16 -5.20 -0.03 6.33 16 18 C -0.52 -14.71 9.39 -34.44 -0.32 -15.03 16 19 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 22 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.73 6.32 -51.93 -0.33 0.41 16 28 H 0.06 0.96 7.39 -51.93 -0.38 0.57 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 34 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.11 1.55 3.25 -51.93 -0.17 1.38 16 39 H 0.09 1.28 7.44 -51.92 -0.39 0.89 16 40 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.06 0.86 6.25 -51.93 -0.32 0.53 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.65 7.44 -51.93 -0.39 0.26 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.03 0.78 8.07 -51.92 -0.42 0.36 16 46 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -31.01 356.12 -8.99 -40.00 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.35 Total: 2.24 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -0.30 Total: -4.77 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.74 Total: -47.00 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.06 Total: -12.67 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.01 -8.99 -40.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357553945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.104 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds